Wall clock time and date at job start Wed Apr 1 2020 03:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 N 1.46491 * 109.47176 * 299.99998 * 3 2 1 5 5 C 1.36938 * 119.99924 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.38812 * 120.00015 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00186 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 120.00005 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46920 * 89.99776 * 9 7 5 11 11 H 1.48501 * 109.46809 * 210.00119 * 9 7 5 12 12 H 1.48502 * 109.46855 * 329.99696 * 9 7 5 13 13 N 1.46502 * 109.46778 * 239.99957 * 2 1 3 14 14 C 1.34773 * 119.99551 * 175.40158 * 13 2 1 15 15 O 1.21509 * 120.00371 * 355.81358 * 14 13 2 16 16 C 1.48161 * 119.99739 * 175.82311 * 14 13 2 17 17 C 1.39615 * 120.89324 * 359.97015 * 16 14 13 18 18 C 1.38857 * 118.95077 * 180.02562 * 17 16 14 19 19 O 1.35682 * 119.62014 * 180.02562 * 18 17 16 20 20 N 1.32203 * 120.75233 * 0.02562 * 18 17 16 21 21 C 1.31880 * 121.97566 * 359.97438 * 20 18 17 22 22 C 1.50701 * 119.50994 * 180.02562 * 21 20 18 23 23 C 1.53006 * 117.49359 * 163.62251 * 22 21 20 24 24 C 1.53002 * 117.49514 * 95.00315 * 22 21 20 25 25 C 1.38023 * 120.97217 * 0.02562 * 21 20 18 26 26 C 1.52999 * 109.46653 * 120.00531 * 2 1 3 27 27 C 1.52997 * 117.50192 * 121.75753 * 26 2 1 28 28 C 1.52995 * 117.50549 * 53.13149 * 26 2 1 29 29 H 1.08996 * 109.47945 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46892 * 300.00405 * 1 2 3 31 31 H 1.09004 * 109.46903 * 59.99752 * 1 2 3 32 32 H 1.08999 * 109.46597 * 60.00367 * 3 2 1 33 33 H 1.09001 * 109.46947 * 179.97438 * 3 2 1 34 34 H 0.97001 * 120.00355 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00646 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00016 * 355.39419 * 13 2 1 37 37 H 1.07998 * 120.52522 * 0.04743 * 17 16 14 38 38 H 0.96704 * 114.00005 * 269.97549 * 19 18 17 39 39 H 1.08994 * 115.54984 * 309.33158 * 22 21 20 40 40 H 1.09004 * 117.49759 * 0.02562 * 23 22 21 41 41 H 1.08997 * 117.49407 * 145.02217 * 23 22 21 42 42 H 1.08995 * 117.49971 * 214.97160 * 24 22 21 43 43 H 1.09007 * 117.50069 * 359.97438 * 24 22 21 44 44 H 1.07997 * 120.42937 * 179.97438 * 25 21 20 45 45 H 1.09000 * 115.54742 * 267.46169 * 26 2 1 46 46 H 1.09000 * 117.50088 * 359.97438 * 27 26 2 47 47 H 1.09004 * 117.50165 * 145.01884 * 27 26 2 48 48 H 1.09001 * 117.50276 * 214.98128 * 28 26 2 49 49 H 1.09005 * 117.49806 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5518 2.1331 -1.1961 5 6 1.8832 3.4439 -1.4130 6 1 2.5048 3.9685 -0.7026 7 6 1.4210 4.0982 -2.5467 8 7 1.7390 5.3582 -2.7550 9 14 0.3463 3.1906 -3.7760 10 1 -1.0813 3.3554 -3.4018 11 1 0.5696 3.7476 -5.1344 12 1 0.6966 1.7475 -3.7690 13 7 2.0183 -0.6906 -1.1962 14 6 3.3398 -0.7334 -1.4573 15 8 4.1199 -0.1353 -0.7431 16 6 3.8413 -1.5094 -2.6155 17 6 2.9616 -2.2039 -3.4481 18 6 3.4755 -2.9187 -4.5219 19 8 2.6329 -3.5981 -5.3401 20 7 4.7764 -2.9449 -4.7561 21 6 5.6367 -2.3013 -3.9913 22 6 7.1082 -2.3687 -4.3099 23 6 8.0204 -1.3275 -3.6581 24 6 7.7012 -1.2371 -5.1517 25 6 5.2094 -1.5670 -2.9036 26 6 2.0399 -0.7214 1.2492 27 6 2.9488 -1.9347 1.0429 28 6 1.5077 -2.1304 1.5182 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 0.0005 34 1 0.9938 1.6619 -1.8345 35 1 1.4164 5.8154 -3.5473 36 1 1.3905 -1.1172 -1.8002 37 1 1.8983 -2.1851 -3.2602 38 1 2.4670 -4.5100 -5.0642 39 1 7.5119 -3.3704 -4.4571 40 1 7.5563 -0.5941 -2.9986 41 1 9.0246 -1.6443 -3.3763 42 1 8.4955 -1.4942 -5.8525 43 1 7.0270 -0.4441 -5.4755 44 1 5.9216 -1.0437 -2.2830 45 1 2.2376 -0.0850 2.1117 46 1 3.1832 -2.2194 0.0171 47 1 3.7448 -2.0967 1.7697 48 1 1.3556 -2.4211 2.5576 49 1 0.7946 -2.5437 0.8049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666001077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:05 Heat of formation + Delta-G solvation = 47.684054 kcal Electronic energy + Delta-G solvation = -31403.777881 eV Core-core repulsion = 27334.310316 eV Total energy + Delta-G solvation = -4069.467566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20951 -40.20263 -38.08581 -37.46733 -36.29514 -35.18780 -33.74693 -32.81890 -31.38703 -30.28797 -29.87084 -26.43605 -25.24104 -24.54022 -23.55344 -22.56170 -22.26519 -21.91424 -21.20468 -20.47711 -19.28898 -18.79890 -17.81731 -17.45254 -17.16442 -16.21548 -15.88746 -15.64344 -15.62700 -15.32779 -14.66078 -14.57325 -14.47066 -13.91429 -13.78486 -13.65892 -13.28554 -12.87447 -12.58223 -12.34128 -12.29839 -12.13191 -12.10833 -12.05718 -11.65459 -11.58059 -11.32119 -11.09327 -10.95750 -10.90766 -10.86003 -10.66780 -10.31470 -10.21232 -10.15634 -9.97184 -9.83562 -9.56536 -9.43725 -9.01154 -8.86310 -8.77619 -7.13799 -5.72507 -3.06132 0.53353 0.71832 2.78049 3.05485 3.18685 3.34880 3.35939 3.44406 3.55663 3.70462 3.85926 4.09836 4.47553 4.60570 4.63449 4.64136 4.68281 4.74447 4.84316 4.85526 4.93956 4.99053 5.14355 5.22826 5.29920 5.37357 5.44969 5.50643 5.52827 5.59114 5.62423 5.62970 5.66654 5.82638 5.85027 5.90838 5.94558 5.98057 6.02850 6.12637 6.17479 6.19843 6.33548 6.42778 6.75858 7.00771 7.18947 7.59250 7.65226 8.05086 8.31052 8.46468 9.25909 9.98029 10.18257 11.46474 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004399 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.065302 B = 6363.646923 C = 7670.769982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.196 3.804 3 C 0.144 3.856 4 N -0.750 5.750 5 C -0.233 4.233 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.281 1.281 13 N -0.712 5.712 14 C 0.565 3.435 15 O -0.501 6.501 16 C -0.061 4.061 17 C -0.163 4.163 18 C 0.312 3.688 19 O -0.478 6.478 20 N -0.486 5.486 21 C 0.181 3.819 22 C -0.112 4.112 23 C -0.171 4.171 24 C -0.160 4.160 25 C -0.121 4.121 26 C -0.143 4.143 27 C -0.164 4.164 28 C -0.181 4.181 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.357 0.643 35 H 0.258 0.742 36 H 0.394 0.606 37 H 0.143 0.857 38 H 0.399 0.601 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.155 0.845 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 -22.987 2.247 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.110 3.890 3 C 0.016 3.984 4 N -0.396 5.396 5 C -0.363 4.363 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.584 5.584 9 Si 0.711 3.289 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.208 1.208 13 N -0.364 5.364 14 C 0.351 3.649 15 O -0.375 6.375 16 C -0.072 4.072 17 C -0.184 4.184 18 C 0.133 3.867 19 O -0.284 6.284 20 N -0.205 5.205 21 C 0.043 3.957 22 C -0.131 4.131 23 C -0.208 4.208 24 C -0.198 4.198 25 C -0.142 4.142 26 C -0.163 4.163 27 C -0.202 4.202 28 C -0.218 4.218 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.229 0.771 37 H 0.161 0.839 38 H 0.257 0.743 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.173 0.827 45 H 0.131 0.869 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.350 -22.283 1.800 22.986 hybrid contribution -1.614 -0.732 -0.598 1.871 sum 3.736 -23.015 1.201 23.347 Atomic orbital electron populations 1.22015 0.93034 1.01644 1.04021 1.20205 0.93801 0.92899 0.82066 1.21158 0.99723 0.87083 0.90410 1.42605 1.62034 1.11133 1.23831 1.19056 1.25976 0.85581 1.05732 0.89248 1.24628 1.00758 0.95817 0.98044 1.69688 1.50059 1.09703 1.28969 0.86609 0.81147 0.79082 0.82022 1.21105 1.21793 1.20764 1.45950 1.06768 1.56975 1.26719 1.17754 0.82879 0.80590 0.83707 1.90771 1.55757 1.42342 1.48641 1.20455 0.94061 0.96734 0.95945 1.22289 1.01338 1.00040 0.94768 1.18876 0.86042 0.94029 0.87785 1.84839 1.62170 1.29711 1.51704 1.66663 1.03049 1.21569 1.29223 1.20003 0.93685 0.92127 0.89888 1.20768 0.88136 0.96956 1.07225 1.23172 1.00223 1.01143 0.96242 1.23008 1.02896 0.99682 0.94176 1.22126 0.95397 0.98523 0.98152 1.22540 1.04086 0.90296 0.99339 1.22927 0.93076 1.02158 1.01991 1.22969 0.97350 0.99824 1.01703 0.92511 0.90291 0.91491 0.95044 0.91819 0.81011 0.93179 0.77122 0.83900 0.74326 0.85795 0.87701 0.87729 0.87950 0.88392 0.82724 0.86885 0.89308 0.89190 0.89090 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.17 37.16 0.30 -1.63 16 2 C 0.20 2.90 0.55 -131.82 -0.07 2.83 16 3 C 0.14 2.87 4.83 -4.05 -0.02 2.85 16 4 N -0.75 -17.91 4.98 -59.92 -0.30 -18.20 16 5 C -0.23 -6.76 10.47 -15.06 -0.16 -6.92 16 6 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 7 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 8 N -0.94 -30.03 13.97 55.49 0.78 -29.26 16 9 Si 0.88 22.53 27.74 -169.99 -4.71 17.82 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 12 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 13 N -0.71 -10.08 4.16 -48.44 -0.20 -10.29 16 14 C 0.57 8.95 4.81 -12.19 -0.06 8.90 16 15 O -0.50 -9.37 12.72 5.36 0.07 -9.31 16 16 C -0.06 -0.86 5.91 -104.68 -0.62 -1.48 16 17 C -0.16 -1.99 9.55 -38.84 -0.37 -2.36 16 18 C 0.31 3.92 7.74 -17.16 -0.13 3.79 16 19 O -0.48 -5.03 13.56 -18.75 -0.25 -5.28 16 20 N -0.49 -6.58 10.27 -9.59 -0.10 -6.68 16 21 C 0.18 2.30 6.45 -82.65 -0.53 1.76 16 22 C -0.11 -1.14 6.21 -91.77 -0.57 -1.71 16 23 C -0.17 -1.53 9.79 -26.73 -0.26 -1.79 16 24 C -0.16 -1.55 10.23 -26.73 -0.27 -1.82 16 25 C -0.12 -1.64 8.92 -39.03 -0.35 -1.99 16 26 C -0.14 -1.85 4.86 -90.62 -0.44 -2.29 16 27 C -0.16 -2.00 8.52 -26.73 -0.23 -2.23 16 28 C -0.18 -1.86 9.68 -26.74 -0.26 -2.12 16 29 H 0.06 0.57 6.89 -51.93 -0.36 0.22 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.98 6.86 -51.93 -0.36 0.62 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.44 5.72 -51.93 -0.30 1.14 16 34 H 0.36 8.21 4.21 -40.82 -0.17 8.04 16 35 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 36 H 0.39 4.65 6.63 -40.82 -0.27 4.38 16 37 H 0.14 1.40 6.54 -52.49 -0.34 1.06 16 38 H 0.40 1.96 9.06 45.56 0.41 2.37 16 39 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.04 6.38 -51.93 -0.33 0.71 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.16 2.03 5.92 -52.49 -0.31 1.72 16 45 H 0.11 1.47 8.06 -51.93 -0.42 1.06 16 46 H 0.09 1.14 5.17 -51.93 -0.27 0.88 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 0.85 7.18 -51.93 -0.37 0.48 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -36.36 390.46 -9.04 -45.40 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -6.06 Total: 16.13 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -4.14 Total: -6.22 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.18 Total: -64.43 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.19 Total: -14.59 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.36 -9.04 -45.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666001077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.084 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds