Wall clock time and date at job start Wed Apr 1 2020 03:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 N 1.46491 * 109.47176 * 299.99998 * 3 2 1 5 5 C 1.36938 * 119.99924 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.38812 * 120.00015 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00186 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 120.00005 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46920 * 89.99776 * 9 7 5 11 11 H 1.48501 * 109.46809 * 210.00119 * 9 7 5 12 12 H 1.48502 * 109.46855 * 329.99696 * 9 7 5 13 13 N 1.46502 * 109.46778 * 239.99957 * 2 1 3 14 14 C 1.34773 * 119.99551 * 175.40158 * 13 2 1 15 15 O 1.21509 * 120.00371 * 355.81358 * 14 13 2 16 16 C 1.48161 * 119.99739 * 175.82311 * 14 13 2 17 17 C 1.39615 * 120.89324 * 359.97015 * 16 14 13 18 18 C 1.38857 * 118.95077 * 180.02562 * 17 16 14 19 19 O 1.35682 * 119.62014 * 180.02562 * 18 17 16 20 20 N 1.32203 * 120.75233 * 0.02562 * 18 17 16 21 21 C 1.31880 * 121.97566 * 359.97438 * 20 18 17 22 22 C 1.50701 * 119.50994 * 180.02562 * 21 20 18 23 23 C 1.53006 * 117.49359 * 163.62251 * 22 21 20 24 24 C 1.53002 * 117.49514 * 95.00315 * 22 21 20 25 25 C 1.38023 * 120.97217 * 0.02562 * 21 20 18 26 26 C 1.52999 * 109.46653 * 120.00531 * 2 1 3 27 27 C 1.52997 * 117.50192 * 121.75753 * 26 2 1 28 28 C 1.52995 * 117.50549 * 53.13149 * 26 2 1 29 29 H 1.08996 * 109.47945 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46892 * 300.00405 * 1 2 3 31 31 H 1.09004 * 109.46903 * 59.99752 * 1 2 3 32 32 H 1.08999 * 109.46597 * 60.00367 * 3 2 1 33 33 H 1.09001 * 109.46947 * 179.97438 * 3 2 1 34 34 H 0.97001 * 120.00355 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00646 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00016 * 355.39419 * 13 2 1 37 37 H 1.07998 * 120.52522 * 0.04743 * 17 16 14 38 38 H 0.96704 * 114.00005 * 269.97549 * 19 18 17 39 39 H 1.08994 * 115.54984 * 309.33158 * 22 21 20 40 40 H 1.09004 * 117.49759 * 0.02562 * 23 22 21 41 41 H 1.08997 * 117.49407 * 145.02217 * 23 22 21 42 42 H 1.08995 * 117.49971 * 214.97160 * 24 22 21 43 43 H 1.09007 * 117.50069 * 359.97438 * 24 22 21 44 44 H 1.07997 * 120.42937 * 179.97438 * 25 21 20 45 45 H 1.09000 * 115.54742 * 267.46169 * 26 2 1 46 46 H 1.09000 * 117.50088 * 359.97438 * 27 26 2 47 47 H 1.09004 * 117.50165 * 145.01884 * 27 26 2 48 48 H 1.09001 * 117.50276 * 214.98128 * 28 26 2 49 49 H 1.09005 * 117.49806 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5518 2.1331 -1.1961 5 6 1.8832 3.4439 -1.4130 6 1 2.5048 3.9685 -0.7026 7 6 1.4210 4.0982 -2.5467 8 7 1.7390 5.3582 -2.7550 9 14 0.3463 3.1906 -3.7760 10 1 -1.0813 3.3554 -3.4018 11 1 0.5696 3.7476 -5.1344 12 1 0.6966 1.7475 -3.7690 13 7 2.0183 -0.6906 -1.1962 14 6 3.3398 -0.7334 -1.4573 15 8 4.1199 -0.1353 -0.7431 16 6 3.8413 -1.5094 -2.6155 17 6 2.9616 -2.2039 -3.4481 18 6 3.4755 -2.9187 -4.5219 19 8 2.6329 -3.5981 -5.3401 20 7 4.7764 -2.9449 -4.7561 21 6 5.6367 -2.3013 -3.9913 22 6 7.1082 -2.3687 -4.3099 23 6 8.0204 -1.3275 -3.6581 24 6 7.7012 -1.2371 -5.1517 25 6 5.2094 -1.5670 -2.9036 26 6 2.0399 -0.7214 1.2492 27 6 2.9488 -1.9347 1.0429 28 6 1.5077 -2.1304 1.5182 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 0.0005 34 1 0.9938 1.6619 -1.8345 35 1 1.4164 5.8154 -3.5473 36 1 1.3905 -1.1172 -1.8002 37 1 1.8983 -2.1851 -3.2602 38 1 2.4670 -4.5100 -5.0642 39 1 7.5119 -3.3704 -4.4571 40 1 7.5563 -0.5941 -2.9986 41 1 9.0246 -1.6443 -3.3763 42 1 8.4955 -1.4942 -5.8525 43 1 7.0270 -0.4441 -5.4755 44 1 5.9216 -1.0437 -2.2830 45 1 2.2376 -0.0850 2.1117 46 1 3.1832 -2.2194 0.0171 47 1 3.7448 -2.0967 1.7697 48 1 1.3556 -2.4211 2.5576 49 1 0.7946 -2.5437 0.8049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666001077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:04 Heat of formation + Delta-G solvation = 19.436242 kcal Electronic energy + Delta-G solvation = -31405.002798 eV Core-core repulsion = 27334.310316 eV Total energy + Delta-G solvation = -4070.692483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26696 -41.27836 -38.91663 -38.59039 -37.16044 -36.76010 -35.15043 -34.14844 -33.14061 -31.54148 -31.02953 -27.94175 -26.27920 -25.62397 -25.11904 -23.40011 -23.14350 -22.87975 -22.74074 -21.48942 -20.58385 -19.83741 -19.67285 -18.43239 -18.13868 -17.35297 -16.89944 -16.82787 -16.57946 -16.54948 -16.28370 -15.69653 -15.47526 -15.38549 -15.10343 -15.00548 -14.75041 -14.24701 -13.78158 -13.59653 -13.50736 -13.39549 -13.26755 -12.99859 -12.91148 -12.87906 -12.46466 -12.36958 -12.33886 -12.14393 -12.01352 -11.84811 -11.71803 -11.44737 -11.41263 -11.22239 -11.05749 -10.95081 -10.80583 -10.47079 -10.09471 -9.93038 -9.25230 -8.04977 -5.36869 -0.50139 -0.22123 1.27984 1.34915 1.41381 1.70985 1.93408 2.30315 2.43726 2.55236 2.88462 2.92689 3.21320 3.25983 3.46596 3.49591 3.75656 3.78967 3.90110 3.91372 3.93504 3.98180 3.99744 4.05380 4.22477 4.23562 4.32566 4.47479 4.52307 4.56198 4.71168 4.77955 4.78380 4.84823 4.87856 4.92945 4.99245 5.05668 5.12381 5.17328 5.19140 5.26085 5.27162 5.29715 5.31287 5.57659 5.73850 6.18017 6.45000 6.51579 6.75189 7.05755 7.14923 7.80774 8.03287 9.17329 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004399 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.065302 B = 6363.646923 C = 7670.769982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.205 3.795 3 C 0.141 3.859 4 N -0.745 5.745 5 C -0.228 4.228 6 H 0.047 0.953 7 C -0.065 4.065 8 N -0.986 5.986 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.299 1.299 12 H -0.253 1.253 13 N -0.703 5.703 14 C 0.563 3.437 15 O -0.540 6.540 16 C -0.076 4.076 17 C -0.157 4.157 18 C 0.313 3.687 19 O -0.482 6.482 20 N -0.501 5.501 21 C 0.178 3.822 22 C -0.118 4.118 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.136 4.136 26 C -0.163 4.163 27 C -0.175 4.175 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.365 0.635 35 H 0.257 0.743 36 H 0.409 0.591 37 H 0.170 0.830 38 H 0.424 0.576 39 H 0.141 0.859 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -26.721 1.508 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.119 3.881 3 C 0.014 3.986 4 N -0.391 5.391 5 C -0.360 4.360 6 H 0.065 0.935 7 C -0.256 4.256 8 N -0.637 5.637 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.226 1.226 12 H -0.178 1.178 13 N -0.356 5.356 14 C 0.350 3.650 15 O -0.417 6.417 16 C -0.087 4.087 17 C -0.179 4.179 18 C 0.134 3.866 19 O -0.292 6.292 20 N -0.221 5.221 21 C 0.041 3.959 22 C -0.137 4.137 23 C -0.201 4.201 24 C -0.200 4.200 25 C -0.156 4.156 26 C -0.182 4.182 27 C -0.212 4.212 28 C -0.182 4.182 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.199 0.801 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.187 0.813 38 H 0.286 0.714 39 H 0.159 0.841 40 H 0.107 0.893 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.095 0.905 44 H 0.166 0.834 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.128 0.872 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.476 -26.099 1.085 26.351 hybrid contribution -0.956 0.455 -0.302 1.101 sum 2.520 -25.644 0.782 25.779 Atomic orbital electron populations 1.22025 0.90879 1.04013 1.03457 1.20020 0.95190 0.89543 0.83327 1.21222 0.98101 0.90672 0.88574 1.42479 1.61973 1.09446 1.25192 1.18985 1.24622 0.87604 1.04750 0.93506 1.25490 1.02917 0.96753 1.00446 1.69891 1.52043 1.11884 1.29845 0.85448 0.79481 0.78994 0.78129 1.19360 1.22639 1.17784 1.45881 1.06542 1.56401 1.26776 1.18069 0.83106 0.80121 0.83736 1.90758 1.56785 1.44080 1.50093 1.20400 0.94635 0.97576 0.96041 1.22467 1.02296 0.99033 0.94069 1.19035 0.85997 0.93905 0.87684 1.84789 1.61476 1.31566 1.51414 1.66751 1.03739 1.22058 1.29589 1.20307 0.94839 0.91458 0.89336 1.20901 0.86975 0.97989 1.07833 1.23223 1.01044 1.00270 0.95556 1.23059 1.03082 0.98868 0.95019 1.22182 0.95476 0.99207 0.98763 1.22413 1.06203 0.91376 0.98235 1.22923 0.94526 1.02004 1.01753 1.23077 0.95769 0.96148 1.03191 0.88629 0.90023 0.92918 0.95546 0.94740 0.80059 0.93418 0.75389 0.81269 0.71439 0.84088 0.89288 0.85273 0.85735 0.90476 0.83433 0.87745 0.90014 0.89437 0.87242 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.17 71.98 0.59 -2.73 16 2 C 0.21 5.79 0.55 3.60 0.00 5.79 16 3 C 0.14 5.77 4.83 86.38 0.42 6.18 16 4 N -0.74 -35.73 4.98 -343.47 -1.71 -37.44 16 5 C -0.23 -13.68 10.47 84.03 0.88 -12.80 16 6 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 8 N -0.99 -65.35 13.97 21.65 0.30 -65.05 16 9 Si 0.95 46.29 27.74 68.60 1.90 48.19 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 12 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 13 N -0.70 -18.63 4.16 -425.47 -1.77 -20.40 16 14 C 0.56 17.70 4.81 86.88 0.42 18.12 16 15 O -0.54 -21.02 12.72 -3.75 -0.05 -21.07 16 16 C -0.08 -2.08 5.91 -19.90 -0.12 -2.20 16 17 C -0.16 -3.48 9.55 22.75 0.22 -3.27 16 18 C 0.31 7.19 7.74 84.79 0.66 7.84 16 19 O -0.48 -8.67 13.56 -90.00 -1.22 -9.89 16 20 N -0.50 -12.91 10.27 -297.15 -3.05 -15.97 16 21 C 0.18 4.44 6.45 42.50 0.27 4.71 16 22 C -0.12 -2.30 6.21 -11.54 -0.07 -2.38 16 23 C -0.16 -2.86 9.79 30.60 0.30 -2.56 16 24 C -0.16 -3.04 10.23 30.60 0.31 -2.73 16 25 C -0.14 -3.71 8.92 22.63 0.20 -3.51 16 26 C -0.16 -3.97 4.86 -10.80 -0.05 -4.02 16 27 C -0.17 -4.01 8.52 30.59 0.26 -3.74 16 28 C -0.15 -2.44 9.68 30.59 0.30 -2.15 16 29 H 0.10 1.44 6.89 -2.39 -0.02 1.42 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.36 6.86 -2.38 -0.02 1.34 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 1.64 5.72 -2.39 -0.01 1.63 16 34 H 0.37 16.22 4.21 -92.71 -0.39 15.83 16 35 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 36 H 0.41 8.25 6.63 -92.71 -0.61 7.64 16 37 H 0.17 2.68 6.54 -2.91 -0.02 2.66 16 38 H 0.42 2.71 9.06 -74.05 -0.67 2.04 16 39 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.09 1.85 6.38 -2.38 -0.02 1.84 16 41 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.15 4.14 5.92 -2.91 -0.02 4.12 16 45 H 0.10 2.71 8.06 -2.39 -0.02 2.69 16 46 H 0.08 2.01 5.17 -2.39 -0.01 1.99 16 47 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.11 1.47 7.18 -2.38 -0.02 1.45 16 Total: -1.00 -82.66 390.46 -1.25 -83.91 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.71 Total: 40.64 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.05 Total: -2.94 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -6.23 Total: -138.85 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.27 Total: -30.95 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal Total: -82.66 -1.25 -83.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666001077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.348 kcal (2) G-P(sol) polarization free energy of solvation -82.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds