Wall clock time and date at job start Wed Apr 1 2020 03:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00149 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46967 * 59.99948 * 9 7 5 11 11 H 1.48505 * 109.46836 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47165 * 299.99541 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 C 1.50699 * 109.47574 * 179.97438 * 16 14 13 18 18 C 1.38359 * 119.85668 * 269.72771 * 17 16 14 19 19 C 1.37957 * 120.14822 * 179.71960 * 18 17 16 20 20 C 1.39580 * 119.84686 * 0.55091 * 19 18 17 21 21 C 1.47845 * 120.13710 * 179.70167 * 20 19 18 22 22 N 1.34769 * 120.00421 * 0.02562 * 21 20 19 23 23 O 1.21556 * 119.99397 * 180.02562 * 21 20 19 24 24 C 1.39574 * 119.71495 * 359.72230 * 20 19 18 25 25 C 1.37954 * 119.85073 * 359.97438 * 24 20 19 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.53006 * 117.51963 * 225.38598 * 26 2 1 28 28 C 1.53001 * 60.00094 * 107.48019 * 27 26 2 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97000 * 120.00155 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 1.08006 * 119.92046 * 359.97438 * 18 17 16 40 40 H 1.08000 * 120.07308 * 180.24428 * 19 18 17 41 41 H 0.96997 * 120.00528 * 0.02562 * 22 21 20 42 42 H 0.97005 * 119.99855 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.07339 * 179.97438 * 24 20 19 44 44 H 1.08005 * 119.92609 * 179.97438 * 25 24 20 45 45 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 46 46 H 1.08993 * 117.49847 * 214.97187 * 27 26 2 47 47 H 1.08998 * 117.49500 * 359.97438 * 27 26 2 48 48 H 1.08999 * 117.50164 * 252.51582 * 28 27 26 49 49 H 1.08997 * 117.49735 * 107.48982 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0024 8 7 6.2358 1.4888 -0.0023 9 14 6.5116 4.2464 -0.0040 10 1 6.1537 5.0258 1.2084 11 1 7.9716 3.9751 -0.0044 12 1 6.1519 5.0244 -1.2166 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 6 1.9623 -0.0529 4.8688 18 6 2.7433 0.9933 5.3268 19 6 2.3638 1.7021 6.4479 20 6 1.1950 1.3543 7.1270 21 6 0.7857 2.1053 8.3329 22 7 1.5413 3.1285 8.7784 23 8 -0.2325 1.7999 8.9226 24 6 0.4146 0.2942 6.6629 25 6 0.8023 -0.4023 5.5370 26 6 2.0400 -0.7212 -1.2491 27 6 3.1742 -1.7321 -1.0683 28 6 1.7548 -2.2199 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2058 1.4888 -0.0027 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 3.6500 1.2583 4.8031 40 1 2.9723 2.5211 6.8021 41 1 2.3535 3.3725 8.3077 42 1 1.2724 3.6214 9.5694 43 1 -0.4906 0.0199 7.1841 44 1 0.1995 -1.2231 5.1771 45 1 2.0307 -0.1343 -2.1676 46 1 3.9109 -1.8102 -1.8676 47 1 3.5574 -1.8832 -0.0591 48 1 1.2041 -2.6921 -0.5520 49 1 1.5579 -2.6189 -2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666042307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:09 Heat of formation + Delta-G solvation = -6.866348 kcal Electronic energy + Delta-G solvation = -30666.470438 eV Core-core repulsion = 26594.637389 eV Total energy + Delta-G solvation = -4071.833049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43838 -39.95903 -38.51960 -37.39172 -34.52449 -34.06931 -33.31390 -32.78053 -31.31862 -30.92721 -29.95212 -27.82857 -25.69288 -23.66881 -23.03593 -22.70375 -22.19238 -21.97672 -20.90157 -20.16701 -18.82540 -18.31713 -17.31375 -17.05986 -16.99623 -15.79366 -15.39383 -15.23068 -15.06326 -14.89292 -14.79458 -14.48767 -14.29503 -13.97735 -13.60256 -13.48216 -13.37452 -13.29102 -12.65904 -12.41398 -12.30050 -12.22832 -12.12907 -11.74340 -11.51385 -11.39492 -11.24664 -11.03485 -10.88968 -10.80154 -10.72154 -10.20752 -10.15592 -9.92166 -9.91341 -9.89762 -9.62730 -9.37947 -8.99060 -8.82399 -8.71772 -8.52751 -6.82069 -5.73454 -2.98763 0.77092 1.38745 2.74134 3.03406 3.34586 3.44247 3.48621 3.49025 3.50771 3.89718 4.04946 4.56371 4.62170 4.69629 4.79569 4.81292 4.92977 5.10303 5.11948 5.12976 5.20855 5.30906 5.39317 5.52085 5.57223 5.60867 5.67274 5.76904 5.78335 5.82526 5.97337 6.00624 6.17368 6.20961 6.22899 6.26580 6.31052 6.34586 6.41479 6.53298 6.57143 6.58597 6.61496 6.85355 6.92837 7.13606 7.15196 7.74182 7.89355 8.07194 8.46811 8.63901 9.58525 10.18117 10.55640 11.49571 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.003488 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.999245 B = 8024.768689 C =10328.178501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.201 3.799 3 C 0.141 3.859 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.066 0.934 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.903 3.097 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.717 5.717 14 C 0.525 3.475 15 O -0.524 6.524 16 C -0.112 4.112 17 C -0.026 4.026 18 C -0.107 4.107 19 C -0.082 4.082 20 C -0.149 4.149 21 C 0.567 3.433 22 N -0.853 5.853 23 O -0.547 6.547 24 C -0.059 4.059 25 C -0.116 4.116 26 C -0.137 4.137 27 C -0.167 4.167 28 C -0.189 4.189 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.384 0.616 35 H 0.253 0.747 36 H 0.395 0.605 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.402 0.598 42 H 0.403 0.597 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -8.075 8.865 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.115 3.885 3 C 0.013 3.987 4 N -0.369 5.369 5 C -0.360 4.360 6 H 0.084 0.916 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.734 3.266 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.372 5.372 14 C 0.311 3.689 15 O -0.400 6.400 16 C -0.152 4.152 17 C -0.026 4.026 18 C -0.125 4.125 19 C -0.101 4.101 20 C -0.152 4.152 21 C 0.354 3.646 22 N -0.416 5.416 23 O -0.425 6.425 24 C -0.078 4.078 25 C -0.134 4.134 26 C -0.156 4.156 27 C -0.205 4.205 28 C -0.226 4.226 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.062 0.938 36 H 0.232 0.768 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.232 0.768 42 H 0.234 0.766 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.161 -7.501 9.191 14.989 hybrid contribution 1.550 0.689 -0.176 1.705 sum -7.611 -6.811 9.016 13.624 Atomic orbital electron populations 1.22089 0.94379 1.01552 1.03173 1.20044 0.93125 0.93196 0.82091 1.21116 0.86611 0.91596 0.99410 1.42216 0.99110 1.06235 1.89335 1.19201 0.89017 0.86271 1.41533 0.91565 1.24636 0.96234 0.96535 1.03636 1.69639 1.06586 1.23716 1.58645 0.86327 0.78951 0.83468 0.77827 1.21481 1.21806 1.21437 1.46167 1.58191 1.27372 1.05468 1.20095 0.80584 0.84246 0.83959 1.90664 1.37632 1.25532 1.86188 1.20801 1.03493 0.99857 0.91054 1.19535 0.94137 0.94971 0.93996 1.21069 1.00616 0.94864 0.95941 1.21205 0.95110 0.98625 0.95157 1.19791 0.98041 0.99820 0.97541 1.18348 0.82760 0.79627 0.83866 1.43770 1.28890 1.35667 1.33303 1.90792 1.25212 1.67746 1.58763 1.21141 0.98475 0.93086 0.95074 1.20947 0.96216 1.00720 0.95497 1.22411 1.03010 0.90871 0.99294 1.22896 0.91417 1.03180 1.02977 1.23018 0.99707 0.97334 1.02546 0.93022 0.90660 0.92014 0.96189 0.93232 0.78131 0.93756 0.76840 0.88219 0.87304 0.84868 0.85739 0.76791 0.76623 0.84892 0.85547 0.86738 0.88349 0.88783 0.89188 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.37 37.15 0.31 -1.89 16 2 C 0.20 3.20 0.52 -131.82 -0.07 3.14 16 3 C 0.14 2.94 4.89 -4.04 -0.02 2.92 16 4 N -0.72 -17.79 5.22 -59.90 -0.31 -18.10 16 5 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -27.23 13.06 55.49 0.72 -26.51 16 9 Si 0.90 22.29 29.55 -169.99 -5.02 17.27 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.72 -10.45 4.49 -47.61 -0.21 -10.67 16 14 C 0.53 8.22 7.23 -10.99 -0.08 8.14 16 15 O -0.52 -10.03 12.28 5.55 0.07 -9.96 16 16 C -0.11 -1.35 5.83 -29.04 -0.17 -1.52 16 17 C -0.03 -0.33 4.38 -104.53 -0.46 -0.79 16 18 C -0.11 -1.42 9.68 -39.64 -0.38 -1.80 16 19 C -0.08 -0.97 9.54 -39.18 -0.37 -1.34 16 20 C -0.15 -1.89 5.87 -104.97 -0.62 -2.50 16 21 C 0.57 7.16 8.05 -12.33 -0.10 7.07 16 22 N -0.85 -7.16 8.82 30.53 0.27 -6.89 16 23 O -0.55 -8.77 17.18 5.32 0.09 -8.68 16 24 C -0.06 -0.75 9.60 -39.19 -0.38 -1.13 16 25 C -0.12 -1.40 9.68 -39.64 -0.38 -1.79 16 26 C -0.14 -2.01 4.48 -90.62 -0.41 -2.41 16 27 C -0.17 -2.30 8.98 -26.73 -0.24 -2.54 16 28 C -0.19 -2.16 9.53 -26.73 -0.25 -2.41 16 29 H 0.05 0.64 7.72 -51.93 -0.40 0.24 16 30 H 0.07 1.22 6.37 -51.93 -0.33 0.89 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.16 5.99 -51.93 -0.31 0.85 16 34 H 0.38 9.54 6.43 -40.82 -0.26 9.28 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.39 4.90 5.64 -40.82 -0.23 4.67 16 37 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.11 1.28 8.08 -51.93 -0.42 0.86 16 39 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 40 H 0.12 1.09 6.41 -52.49 -0.34 0.75 16 41 H 0.40 2.46 6.86 -40.82 -0.28 2.18 16 42 H 0.40 2.73 8.93 -40.82 -0.36 2.37 16 43 H 0.13 1.61 7.65 -52.49 -0.40 1.21 16 44 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 45 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 46 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.09 1.27 5.96 -51.93 -0.31 0.96 16 48 H 0.09 0.93 7.99 -51.93 -0.42 0.52 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -35.32 399.12 -9.23 -44.55 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -6.99 Total: 18.89 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.86 Total: -5.90 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.47 Total: -62.17 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.16 Total: -18.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.32 -9.23 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666042307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.684 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds