Wall clock time and date at job start Wed Apr 1 2020 03:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00149 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46967 * 59.99948 * 9 7 5 11 11 H 1.48505 * 109.46836 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47165 * 299.99541 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 C 1.50699 * 109.47574 * 179.97438 * 16 14 13 18 18 C 1.38359 * 119.85668 * 269.72771 * 17 16 14 19 19 C 1.37957 * 120.14822 * 179.71960 * 18 17 16 20 20 C 1.39580 * 119.84686 * 0.55091 * 19 18 17 21 21 C 1.47845 * 120.13710 * 179.70167 * 20 19 18 22 22 N 1.34769 * 120.00421 * 0.02562 * 21 20 19 23 23 O 1.21556 * 119.99397 * 180.02562 * 21 20 19 24 24 C 1.39574 * 119.71495 * 359.72230 * 20 19 18 25 25 C 1.37954 * 119.85073 * 359.97438 * 24 20 19 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.53006 * 117.51963 * 225.38598 * 26 2 1 28 28 C 1.53001 * 60.00094 * 107.48019 * 27 26 2 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97000 * 120.00155 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 1.08006 * 119.92046 * 359.97438 * 18 17 16 40 40 H 1.08000 * 120.07308 * 180.24428 * 19 18 17 41 41 H 0.96997 * 120.00528 * 0.02562 * 22 21 20 42 42 H 0.97005 * 119.99855 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.07339 * 179.97438 * 24 20 19 44 44 H 1.08005 * 119.92609 * 179.97438 * 25 24 20 45 45 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 46 46 H 1.08993 * 117.49847 * 214.97187 * 27 26 2 47 47 H 1.08998 * 117.49500 * 359.97438 * 27 26 2 48 48 H 1.08999 * 117.50164 * 252.51582 * 28 27 26 49 49 H 1.08997 * 117.49735 * 107.48982 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0024 8 7 6.2358 1.4888 -0.0023 9 14 6.5116 4.2464 -0.0040 10 1 6.1537 5.0258 1.2084 11 1 7.9716 3.9751 -0.0044 12 1 6.1519 5.0244 -1.2166 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 6 1.9623 -0.0529 4.8688 18 6 2.7433 0.9933 5.3268 19 6 2.3638 1.7021 6.4479 20 6 1.1950 1.3543 7.1270 21 6 0.7857 2.1053 8.3329 22 7 1.5413 3.1285 8.7784 23 8 -0.2325 1.7999 8.9226 24 6 0.4146 0.2942 6.6629 25 6 0.8023 -0.4023 5.5370 26 6 2.0400 -0.7212 -1.2491 27 6 3.1742 -1.7321 -1.0683 28 6 1.7548 -2.2199 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2058 1.4888 -0.0027 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 3.6500 1.2583 4.8031 40 1 2.9723 2.5211 6.8021 41 1 2.3535 3.3725 8.3077 42 1 1.2724 3.6214 9.5694 43 1 -0.4906 0.0199 7.1841 44 1 0.1995 -1.2231 5.1771 45 1 2.0307 -0.1343 -2.1676 46 1 3.9109 -1.8102 -1.8676 47 1 3.5574 -1.8832 -0.0591 48 1 1.2041 -2.6921 -0.5520 49 1 1.5579 -2.6189 -2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666042307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:08 Heat of formation + Delta-G solvation = -31.822112 kcal Electronic energy + Delta-G solvation = -30667.552601 eV Core-core repulsion = 26594.637389 eV Total energy + Delta-G solvation = -4072.915212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58119 -41.02251 -39.56448 -38.55173 -36.23910 -35.01599 -34.74548 -33.85971 -32.91616 -31.87754 -31.53677 -28.83506 -27.43790 -24.97666 -24.34244 -23.70129 -23.65394 -23.10611 -21.96011 -21.17862 -20.16726 -19.21749 -19.09101 -18.43211 -17.91048 -17.08795 -16.53809 -16.40581 -16.18720 -16.05169 -15.92979 -15.82720 -15.53813 -15.25781 -15.12878 -14.94928 -14.57592 -14.23686 -14.01037 -13.89908 -13.74930 -13.37645 -13.30124 -12.99218 -12.82069 -12.71232 -12.62252 -12.44171 -12.26923 -12.19074 -12.01427 -11.97576 -11.74673 -11.24244 -11.09608 -10.99815 -10.92759 -10.78543 -10.52335 -9.94818 -9.84008 -9.73689 -8.87719 -7.90682 -5.15571 -0.20614 0.42408 1.46505 1.47845 1.54247 1.73523 1.84424 2.36636 2.51528 2.57991 2.90082 2.98908 3.41496 3.62165 3.66420 3.79812 3.86450 3.89391 4.00047 4.01824 4.09123 4.17004 4.31217 4.36054 4.39151 4.60923 4.62207 4.65294 4.70777 4.81010 4.85786 4.89726 4.92685 4.99547 5.04198 5.10850 5.24227 5.26027 5.29544 5.33283 5.34084 5.39827 5.51078 5.57061 5.78218 5.81399 5.91019 6.32043 6.34213 6.73402 7.22271 7.40341 7.45859 8.16165 8.48503 9.31594 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.003488 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.999245 B = 8024.768689 C =10328.178501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.210 3.790 3 C 0.142 3.858 4 N -0.726 5.726 5 C -0.244 4.244 6 H 0.058 0.942 7 C -0.062 4.062 8 N -0.958 5.958 9 Si 0.962 3.038 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.284 1.284 13 N -0.710 5.710 14 C 0.518 3.482 15 O -0.564 6.564 16 C -0.105 4.105 17 C -0.036 4.036 18 C -0.128 4.128 19 C -0.079 4.079 20 C -0.160 4.160 21 C 0.565 3.435 22 N -0.831 5.831 23 O -0.588 6.588 24 C -0.070 4.070 25 C -0.115 4.115 26 C -0.161 4.161 27 C -0.180 4.180 28 C -0.147 4.147 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.011 0.989 33 H 0.024 0.976 34 H 0.383 0.617 35 H 0.251 0.749 36 H 0.407 0.593 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.152 0.848 41 H 0.415 0.585 42 H 0.413 0.587 43 H 0.134 0.866 44 H 0.149 0.851 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.110 0.890 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 -9.265 8.924 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.124 3.876 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.376 4.376 6 H 0.076 0.924 7 C -0.256 4.256 8 N -0.609 5.609 9 Si 0.792 3.208 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.210 1.210 13 N -0.365 5.365 14 C 0.305 3.695 15 O -0.443 6.443 16 C -0.145 4.145 17 C -0.037 4.037 18 C -0.146 4.146 19 C -0.097 4.097 20 C -0.163 4.163 21 C 0.351 3.649 22 N -0.395 5.395 23 O -0.470 6.470 24 C -0.089 4.089 25 C -0.133 4.133 26 C -0.179 4.179 27 C -0.217 4.217 28 C -0.183 4.183 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.216 0.784 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.170 0.830 41 H 0.248 0.752 42 H 0.246 0.754 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.128 0.872 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.185 -8.684 9.245 15.660 hybrid contribution 1.568 1.122 -0.212 1.940 sum -7.617 -7.562 9.033 14.028 Atomic orbital electron populations 1.22003 0.92878 1.02996 1.02419 1.19804 0.94062 0.90350 0.83396 1.21137 0.84620 0.95286 0.97542 1.42247 1.00513 1.05186 1.89010 1.19467 0.89673 0.87180 1.41298 0.92370 1.25297 0.96875 0.99500 1.03879 1.69761 1.06483 1.25236 1.59426 0.85395 0.77537 0.80077 0.77833 1.21015 1.21654 1.21041 1.46111 1.57933 1.27583 1.04895 1.20749 0.79948 0.83781 0.84994 1.90652 1.39498 1.27308 1.86814 1.20827 1.03372 1.01486 0.88790 1.19719 0.94473 0.95120 0.94399 1.21195 1.00840 0.95782 0.96804 1.21441 0.94961 0.98921 0.94415 1.19932 0.98422 1.00105 0.97838 1.18412 0.82550 0.80206 0.83685 1.43599 1.28531 1.34133 1.33230 1.90770 1.27043 1.69174 1.59973 1.21326 0.98706 0.93419 0.95468 1.21164 0.96013 1.01134 0.95021 1.22280 1.05040 0.92683 0.97924 1.22914 0.92390 1.03619 1.02803 1.23091 0.97148 0.93858 1.04230 0.90355 0.92736 0.91469 0.97118 0.95800 0.78356 0.94059 0.75393 0.84260 0.87048 0.85776 0.83028 0.75246 0.75415 0.84782 0.83352 0.88298 0.89329 0.88703 0.87164 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.37 71.98 0.60 -3.36 16 2 C 0.21 6.57 0.52 3.60 0.00 6.58 16 3 C 0.14 6.08 4.89 86.38 0.42 6.50 16 4 N -0.73 -36.34 5.22 -343.44 -1.79 -38.14 16 5 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 6 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 7 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 8 N -0.96 -55.97 13.06 21.65 0.28 -55.68 16 9 Si 0.96 45.94 29.55 68.60 2.03 47.97 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.71 -19.87 4.49 -422.94 -1.90 -21.77 16 14 C 0.52 15.84 7.23 87.66 0.63 16.48 16 15 O -0.56 -21.84 12.28 -3.04 -0.04 -21.88 16 16 C -0.11 -2.38 5.83 29.10 0.17 -2.21 16 17 C -0.04 -0.92 4.38 -19.81 -0.09 -1.00 16 18 C -0.13 -3.39 9.68 22.23 0.22 -3.17 16 19 C -0.08 -1.80 9.54 22.53 0.21 -1.59 16 20 C -0.16 -3.98 5.87 -20.09 -0.12 -4.10 16 21 C 0.56 13.98 8.05 86.79 0.70 14.68 16 22 N -0.83 -12.82 8.82 -175.61 -1.55 -14.37 16 23 O -0.59 -18.95 17.18 -3.89 -0.07 -19.01 16 24 C -0.07 -1.77 9.60 22.52 0.22 -1.55 16 25 C -0.12 -2.68 9.68 22.23 0.22 -2.47 16 26 C -0.16 -4.51 4.48 -10.79 -0.05 -4.55 16 27 C -0.18 -4.68 8.98 30.60 0.27 -4.40 16 28 C -0.15 -2.86 9.53 30.60 0.29 -2.57 16 29 H 0.08 1.72 7.72 -2.39 -0.02 1.70 16 30 H 0.05 1.75 6.37 -2.39 -0.02 1.73 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.02 1.17 5.99 -2.39 -0.01 1.15 16 34 H 0.38 19.24 6.43 -92.71 -0.60 18.64 16 35 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.41 9.29 5.64 -92.71 -0.52 8.76 16 37 H 0.14 1.99 8.08 -2.38 -0.02 1.97 16 38 H 0.11 2.48 8.08 -2.39 -0.02 2.46 16 39 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.15 2.42 6.41 -2.91 -0.02 2.41 16 41 H 0.42 4.29 6.86 -92.71 -0.64 3.65 16 42 H 0.41 5.00 8.93 -92.70 -0.83 4.17 16 43 H 0.13 3.27 7.65 -2.91 -0.02 3.24 16 44 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.09 2.42 5.96 -2.39 -0.01 2.41 16 48 H 0.11 1.77 7.99 -2.39 -0.02 1.75 16 49 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -77.88 399.12 0.41 -77.47 By element: Atomic # 1 Polarization: 49.77 SS G_CDS: -1.56 Total: 48.21 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.01 Total: -2.80 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -4.96 Total: -129.96 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.10 Total: -40.89 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.88 0.41 -77.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666042307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.650 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds