Wall clock time and date at job start Wed Apr 1 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47497 * 2 1 4 4 N 1.46509 * 109.46823 * 299.99769 * 3 2 1 5 5 C 1.36935 * 119.99547 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00655 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99741 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99800 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47165 * 90.00553 * 9 7 5 11 11 H 1.48504 * 109.46937 * 210.00255 * 9 7 5 12 12 H 1.48501 * 109.47543 * 330.00039 * 9 7 5 13 13 N 1.46503 * 109.46961 * 239.99816 * 2 1 3 14 14 C 1.34775 * 119.99702 * 174.05853 * 13 2 1 15 15 O 1.21280 * 120.00567 * 355.57195 * 14 13 2 16 16 C 1.50712 * 119.99739 * 175.29691 * 14 13 2 17 17 C 1.50698 * 109.47119 * 180.27364 * 16 14 13 18 18 C 1.38351 * 119.85563 * 269.72975 * 17 16 14 19 19 C 1.37961 * 120.14603 * 179.72802 * 18 17 16 20 20 C 1.39578 * 119.85019 * 0.53985 * 19 18 17 21 21 C 1.47845 * 120.14328 * 179.71004 * 20 19 18 22 22 N 1.34779 * 119.99898 * 0.02562 * 21 20 19 23 23 O 1.21555 * 120.00216 * 180.02562 * 21 20 19 24 24 C 1.39579 * 119.71282 * 359.73025 * 20 19 18 25 25 C 1.37951 * 119.85078 * 359.97438 * 24 20 19 26 26 C 1.53004 * 109.47272 * 119.99999 * 2 1 3 27 27 C 1.52998 * 117.49739 * 122.15350 * 26 2 1 28 28 C 1.53004 * 117.49592 * 53.49546 * 26 2 1 29 29 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46779 * 300.00551 * 1 2 3 31 31 H 1.09004 * 109.46670 * 59.99922 * 1 2 3 32 32 H 1.08991 * 109.47192 * 59.99866 * 3 2 1 33 33 H 1.09001 * 109.47079 * 180.02562 * 3 2 1 34 34 H 0.96996 * 120.00042 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99697 * 180.02562 * 8 7 5 36 36 H 0.96994 * 120.00406 * 354.05654 * 13 2 1 37 37 H 1.08996 * 109.46716 * 300.27280 * 16 14 13 38 38 H 1.08997 * 109.47067 * 60.27359 * 16 14 13 39 39 H 1.08000 * 119.93055 * 359.97438 * 18 17 16 40 40 H 1.08006 * 120.07701 * 180.25192 * 19 18 17 41 41 H 0.97000 * 120.00127 * 0.02562 * 22 21 20 42 42 H 0.96998 * 119.99717 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.06873 * 179.97438 * 24 20 19 44 44 H 1.08001 * 119.92815 * 179.97438 * 25 24 20 45 45 H 1.08995 * 115.54785 * 267.83001 * 26 2 1 46 46 H 1.09002 * 117.50287 * 0.02562 * 27 26 2 47 47 H 1.09005 * 117.49418 * 145.02396 * 27 26 2 48 48 H 1.08996 * 117.49361 * 214.98220 * 28 26 2 49 49 H 1.08994 * 117.49771 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5518 2.1331 -1.1963 5 6 1.8831 3.4439 -1.4132 6 1 2.5041 3.9688 -0.7024 7 6 1.4200 4.0984 -2.5464 8 7 1.7381 5.3585 -2.7547 9 14 0.3455 3.1908 -3.7756 10 1 -1.0820 3.3546 -3.4009 11 1 0.5679 3.7484 -5.1339 12 1 0.6965 1.7479 -3.7694 13 7 2.0183 -0.6907 -1.1962 14 6 3.3375 -0.7102 -1.4717 15 8 4.1118 -0.0893 -0.7747 16 6 3.8510 -1.5087 -2.6422 17 6 5.3492 -1.3695 -2.7266 18 6 5.9049 -0.3509 -3.4801 19 6 7.2756 -0.2145 -3.5570 20 6 8.1022 -1.1138 -2.8816 21 6 9.5720 -0.9775 -2.9648 22 7 10.1164 0.0171 -3.6935 23 8 10.2895 -1.7624 -2.3759 24 6 7.5352 -2.1425 -2.1277 25 6 6.1630 -2.2640 -2.0542 26 6 2.0401 -0.7213 1.2493 27 6 2.9565 -1.9289 1.0430 28 6 1.5143 -2.1336 1.5136 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 0.9938 1.6618 -1.8346 35 1 1.4142 5.8160 -3.5464 36 1 1.3923 -1.1339 -1.7899 37 1 3.5907 -2.5586 -2.5079 38 1 3.3992 -1.1370 -3.5618 39 1 5.2642 0.3414 -4.0061 40 1 7.7081 0.5836 -4.1423 41 1 9.5439 0.6437 -4.1631 42 1 11.0807 0.1063 -3.7484 43 1 8.1694 -2.8418 -1.6032 44 1 5.7230 -3.0598 -1.4716 45 1 2.2319 -0.0856 2.1136 46 1 3.1964 -2.2094 0.0174 47 1 3.7511 -2.0880 1.7721 48 1 1.3607 -2.4272 2.5520 49 1 0.8049 -2.5487 0.7979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666042308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:13 Heat of formation + Delta-G solvation = 2.106281 kcal Electronic energy + Delta-G solvation = -30930.274795 eV Core-core repulsion = 26858.830829 eV Total energy + Delta-G solvation = -4071.443966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64292 -40.06278 -38.51526 -37.14067 -35.12965 -34.09569 -33.44929 -32.76983 -31.47838 -30.98488 -30.04580 -27.93358 -26.32692 -23.75123 -23.31774 -22.77931 -22.20242 -21.24784 -20.94493 -20.21596 -19.17157 -18.34477 -17.77844 -17.04494 -16.96282 -16.27840 -15.64375 -15.32320 -15.21130 -15.04636 -14.87298 -14.45580 -14.23094 -13.82935 -13.72878 -13.63412 -13.60081 -13.36274 -12.86688 -12.48371 -12.35962 -12.24835 -12.17665 -11.91977 -11.69316 -11.56693 -11.26436 -11.12205 -11.04282 -10.89214 -10.85070 -10.23568 -10.21927 -10.20863 -9.95799 -9.92585 -9.57095 -9.41071 -9.04492 -8.87531 -8.73675 -8.67882 -7.12061 -5.73026 -3.05994 0.71798 1.33128 2.70015 2.94487 3.30008 3.31790 3.33982 3.36172 3.41108 3.81934 3.93362 4.47869 4.58850 4.63016 4.70317 4.74078 4.87016 4.92861 5.01952 5.08913 5.11542 5.22343 5.30303 5.38345 5.43253 5.50252 5.55797 5.59411 5.67080 5.69835 5.72409 5.89875 5.93331 6.03939 6.09285 6.17259 6.17910 6.20928 6.25726 6.38162 6.45196 6.51270 6.55522 6.79173 6.85292 7.10838 7.11828 7.78243 8.05341 8.05868 8.45858 8.56278 9.26248 9.98177 10.19479 11.46221 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009113 B = 0.003723 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.840884 B = 7519.032759 C = 9651.100968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.197 3.803 3 C 0.143 3.857 4 N -0.749 5.749 5 C -0.230 4.230 6 H 0.088 0.912 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.883 3.117 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.281 1.281 13 N -0.723 5.723 14 C 0.521 3.479 15 O -0.505 6.505 16 C -0.113 4.113 17 C -0.029 4.029 18 C -0.108 4.108 19 C -0.081 4.081 20 C -0.147 4.147 21 C 0.567 3.433 22 N -0.852 5.852 23 O -0.546 6.546 24 C -0.058 4.058 25 C -0.114 4.114 26 C -0.143 4.143 27 C -0.162 4.162 28 C -0.183 4.183 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.357 0.643 35 H 0.257 0.743 36 H 0.393 0.607 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.402 0.598 42 H 0.403 0.597 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -18.769 -0.849 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.111 3.889 3 C 0.016 3.984 4 N -0.395 5.395 5 C -0.360 4.360 6 H 0.106 0.894 7 C -0.195 4.195 8 N -0.587 5.587 9 Si 0.714 3.286 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.207 1.207 13 N -0.376 5.376 14 C 0.307 3.693 15 O -0.379 6.379 16 C -0.153 4.153 17 C -0.030 4.030 18 C -0.126 4.126 19 C -0.100 4.100 20 C -0.150 4.150 21 C 0.354 3.646 22 N -0.416 5.416 23 O -0.424 6.424 24 C -0.077 4.077 25 C -0.132 4.132 26 C -0.163 4.163 27 C -0.200 4.200 28 C -0.220 4.220 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.227 0.773 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.232 0.768 42 H 0.234 0.766 43 H 0.152 0.848 44 H 0.144 0.856 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.978 -18.668 0.149 19.603 hybrid contribution -1.092 -0.164 -1.570 1.920 sum 4.886 -18.833 -1.421 19.508 Atomic orbital electron populations 1.22002 0.93418 1.01467 1.03745 1.20105 0.93478 0.92813 0.82463 1.21182 0.99913 0.87238 0.90112 1.42589 1.61991 1.11045 1.23873 1.19080 1.25682 0.85651 1.05605 0.89372 1.24633 1.00873 0.95827 0.98131 1.69702 1.50181 1.09724 1.29045 0.86573 0.81185 0.78953 0.81894 1.21256 1.21906 1.20745 1.46037 1.07434 1.57044 1.27047 1.20038 0.82457 0.81430 0.85387 1.90719 1.55763 1.41618 1.49839 1.20828 0.93124 1.01855 0.99486 1.19496 0.93920 0.94469 0.95067 1.21021 0.94821 0.97406 0.99313 1.21213 0.93691 0.97331 0.97744 1.19806 0.92222 0.99499 1.03440 1.18338 0.88227 0.80243 0.77834 1.43770 1.11608 1.32797 1.53404 1.90795 1.62968 1.43081 1.45603 1.21150 0.94744 0.96169 0.95628 1.20926 0.93035 0.99778 0.99485 1.22545 1.04021 0.90256 0.99453 1.22912 0.92808 1.02238 1.02006 1.22965 0.97476 0.99917 1.01608 0.92632 0.90656 0.91621 0.95508 0.91543 0.81027 0.93246 0.77333 0.88107 0.87805 0.85087 0.85638 0.76771 0.76573 0.84837 0.85563 0.87262 0.89096 0.89420 0.89287 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.18 37.16 0.30 -1.62 16 2 C 0.20 2.88 0.55 -131.82 -0.07 2.81 16 3 C 0.14 2.86 4.81 -4.04 -0.02 2.84 16 4 N -0.75 -17.50 4.98 -59.90 -0.30 -17.79 16 5 C -0.23 -6.55 10.47 -15.06 -0.16 -6.71 16 6 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 7 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 8 N -0.94 -29.53 13.97 55.49 0.78 -28.75 16 9 Si 0.88 21.63 27.73 -169.99 -4.71 16.91 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 13 N -0.72 -9.49 4.17 -47.60 -0.20 -9.69 16 14 C 0.52 7.49 4.86 -10.98 -0.05 7.43 16 15 O -0.51 -9.30 12.37 5.56 0.07 -9.23 16 16 C -0.11 -1.21 5.83 -29.03 -0.17 -1.38 16 17 C -0.03 -0.35 4.38 -104.53 -0.46 -0.81 16 18 C -0.11 -1.35 9.68 -39.64 -0.38 -1.73 16 19 C -0.08 -0.92 9.54 -39.18 -0.37 -1.29 16 20 C -0.15 -1.81 5.87 -104.97 -0.62 -2.42 16 21 C 0.57 7.06 8.05 -12.33 -0.10 6.96 16 22 N -0.85 -7.07 8.82 30.53 0.27 -6.80 16 23 O -0.55 -8.68 17.18 5.32 0.09 -8.59 16 24 C -0.06 -0.71 9.60 -39.19 -0.38 -1.09 16 25 C -0.11 -1.31 9.68 -39.64 -0.38 -1.70 16 26 C -0.14 -1.88 4.89 -90.62 -0.44 -2.32 16 27 C -0.16 -1.97 8.62 -26.69 -0.23 -2.20 16 28 C -0.18 -1.90 9.68 -26.69 -0.26 -2.16 16 29 H 0.05 0.57 6.91 -51.93 -0.36 0.21 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.95 6.86 -51.93 -0.36 0.60 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.51 5.63 -51.93 -0.29 1.22 16 34 H 0.36 7.93 4.21 -40.82 -0.17 7.76 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.39 4.09 8.48 -40.82 -0.35 3.74 16 37 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.13 1.06 6.41 -52.48 -0.34 0.72 16 41 H 0.40 2.41 6.86 -40.82 -0.28 2.13 16 42 H 0.40 2.71 8.93 -40.82 -0.36 2.35 16 43 H 0.13 1.58 7.65 -52.49 -0.40 1.18 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.11 1.49 8.06 -51.93 -0.42 1.08 16 46 H 0.09 1.10 5.21 -51.93 -0.27 0.83 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.09 0.85 7.19 -51.93 -0.37 0.48 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -37.35 393.79 -8.90 -46.25 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -6.94 Total: 17.25 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.89 Total: -5.48 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 0.55 Total: -63.04 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.16 Total: -17.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.35 -8.90 -46.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666042308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.352 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds