Wall clock time and date at job start Wed Apr 1 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47497 * 2 1 4 4 N 1.46509 * 109.46823 * 299.99769 * 3 2 1 5 5 C 1.36935 * 119.99547 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00655 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99741 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99800 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47165 * 90.00553 * 9 7 5 11 11 H 1.48504 * 109.46937 * 210.00255 * 9 7 5 12 12 H 1.48501 * 109.47543 * 330.00039 * 9 7 5 13 13 N 1.46503 * 109.46961 * 239.99816 * 2 1 3 14 14 C 1.34775 * 119.99702 * 174.05853 * 13 2 1 15 15 O 1.21280 * 120.00567 * 355.57195 * 14 13 2 16 16 C 1.50712 * 119.99739 * 175.29691 * 14 13 2 17 17 C 1.50698 * 109.47119 * 180.27364 * 16 14 13 18 18 C 1.38351 * 119.85563 * 269.72975 * 17 16 14 19 19 C 1.37961 * 120.14603 * 179.72802 * 18 17 16 20 20 C 1.39578 * 119.85019 * 0.53985 * 19 18 17 21 21 C 1.47845 * 120.14328 * 179.71004 * 20 19 18 22 22 N 1.34779 * 119.99898 * 0.02562 * 21 20 19 23 23 O 1.21555 * 120.00216 * 180.02562 * 21 20 19 24 24 C 1.39579 * 119.71282 * 359.73025 * 20 19 18 25 25 C 1.37951 * 119.85078 * 359.97438 * 24 20 19 26 26 C 1.53004 * 109.47272 * 119.99999 * 2 1 3 27 27 C 1.52998 * 117.49739 * 122.15350 * 26 2 1 28 28 C 1.53004 * 117.49592 * 53.49546 * 26 2 1 29 29 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46779 * 300.00551 * 1 2 3 31 31 H 1.09004 * 109.46670 * 59.99922 * 1 2 3 32 32 H 1.08991 * 109.47192 * 59.99866 * 3 2 1 33 33 H 1.09001 * 109.47079 * 180.02562 * 3 2 1 34 34 H 0.96996 * 120.00042 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99697 * 180.02562 * 8 7 5 36 36 H 0.96994 * 120.00406 * 354.05654 * 13 2 1 37 37 H 1.08996 * 109.46716 * 300.27280 * 16 14 13 38 38 H 1.08997 * 109.47067 * 60.27359 * 16 14 13 39 39 H 1.08000 * 119.93055 * 359.97438 * 18 17 16 40 40 H 1.08006 * 120.07701 * 180.25192 * 19 18 17 41 41 H 0.97000 * 120.00127 * 0.02562 * 22 21 20 42 42 H 0.96998 * 119.99717 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.06873 * 179.97438 * 24 20 19 44 44 H 1.08001 * 119.92815 * 179.97438 * 25 24 20 45 45 H 1.08995 * 115.54785 * 267.83001 * 26 2 1 46 46 H 1.09002 * 117.50287 * 0.02562 * 27 26 2 47 47 H 1.09005 * 117.49418 * 145.02396 * 27 26 2 48 48 H 1.08996 * 117.49361 * 214.98220 * 28 26 2 49 49 H 1.08994 * 117.49771 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5518 2.1331 -1.1963 5 6 1.8831 3.4439 -1.4132 6 1 2.5041 3.9688 -0.7024 7 6 1.4200 4.0984 -2.5464 8 7 1.7381 5.3585 -2.7547 9 14 0.3455 3.1908 -3.7756 10 1 -1.0820 3.3546 -3.4009 11 1 0.5679 3.7484 -5.1339 12 1 0.6965 1.7479 -3.7694 13 7 2.0183 -0.6907 -1.1962 14 6 3.3375 -0.7102 -1.4717 15 8 4.1118 -0.0893 -0.7747 16 6 3.8510 -1.5087 -2.6422 17 6 5.3492 -1.3695 -2.7266 18 6 5.9049 -0.3509 -3.4801 19 6 7.2756 -0.2145 -3.5570 20 6 8.1022 -1.1138 -2.8816 21 6 9.5720 -0.9775 -2.9648 22 7 10.1164 0.0171 -3.6935 23 8 10.2895 -1.7624 -2.3759 24 6 7.5352 -2.1425 -2.1277 25 6 6.1630 -2.2640 -2.0542 26 6 2.0401 -0.7213 1.2493 27 6 2.9565 -1.9289 1.0430 28 6 1.5143 -2.1336 1.5136 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 0.9938 1.6618 -1.8346 35 1 1.4142 5.8160 -3.5464 36 1 1.3923 -1.1339 -1.7899 37 1 3.5907 -2.5586 -2.5079 38 1 3.3992 -1.1370 -3.5618 39 1 5.2642 0.3414 -4.0061 40 1 7.7081 0.5836 -4.1423 41 1 9.5439 0.6437 -4.1631 42 1 11.0807 0.1063 -3.7484 43 1 8.1694 -2.8418 -1.6032 44 1 5.7230 -3.0598 -1.4716 45 1 2.2319 -0.0856 2.1136 46 1 3.1964 -2.2094 0.0174 47 1 3.7511 -2.0880 1.7721 48 1 1.3607 -2.4272 2.5520 49 1 0.8049 -2.5487 0.7979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666042308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:12 Heat of formation + Delta-G solvation = -26.155189 kcal Electronic energy + Delta-G solvation = -30931.500305 eV Core-core repulsion = 26858.830829 eV Total energy + Delta-G solvation = -4072.669476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71165 -41.04264 -39.48676 -38.23827 -36.69569 -35.01315 -34.87766 -33.84309 -33.17798 -31.88140 -31.51045 -28.84313 -27.85281 -25.30248 -24.39658 -23.67520 -23.07627 -22.81525 -21.98678 -21.16076 -20.46227 -19.67859 -19.20724 -18.03776 -17.92109 -17.34541 -16.84991 -16.53101 -16.24101 -16.13265 -15.95351 -15.86493 -15.38486 -15.19079 -14.99165 -14.87507 -14.68470 -14.56987 -14.24677 -13.76402 -13.56591 -13.40892 -13.31006 -13.20979 -12.92968 -12.79643 -12.60883 -12.35762 -12.26733 -12.07485 -11.98875 -11.91159 -11.78566 -11.25155 -11.20017 -11.08891 -10.91600 -10.79445 -10.41785 -9.94979 -9.88226 -9.74752 -9.17969 -7.99762 -5.32034 -0.20916 0.42340 1.33703 1.41928 1.49117 1.74186 1.87796 2.34041 2.50029 2.51057 2.89062 2.99210 3.31251 3.56256 3.61522 3.79254 3.88560 3.94904 3.99254 4.00560 4.02320 4.16107 4.28306 4.32766 4.38672 4.40425 4.58027 4.60229 4.65571 4.83207 4.84416 4.91573 4.95429 4.98205 5.03452 5.12139 5.24601 5.26175 5.31823 5.32911 5.34237 5.37390 5.55260 5.74400 5.80514 5.81057 5.91022 6.22872 6.33419 6.77518 7.11013 7.21298 7.52826 7.85342 8.10808 9.22864 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009113 B = 0.003723 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.840884 B = 7519.032759 C = 9651.100968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.209 3.791 3 C 0.142 3.858 4 N -0.741 5.741 5 C -0.230 4.230 6 H 0.039 0.961 7 C -0.067 4.067 8 N -0.989 5.989 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.242 1.242 13 N -0.715 5.715 14 C 0.515 3.485 15 O -0.554 6.554 16 C -0.106 4.106 17 C -0.037 4.037 18 C -0.128 4.128 19 C -0.081 4.081 20 C -0.160 4.160 21 C 0.563 3.437 22 N -0.831 5.831 23 O -0.589 6.589 24 C -0.072 4.072 25 C -0.115 4.115 26 C -0.167 4.167 27 C -0.169 4.169 28 C -0.148 4.148 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.012 0.988 33 H 0.036 0.964 34 H 0.367 0.633 35 H 0.257 0.743 36 H 0.412 0.588 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.415 0.585 42 H 0.413 0.587 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -22.031 -2.277 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.122 3.878 3 C 0.015 3.985 4 N -0.387 5.387 5 C -0.361 4.361 6 H 0.057 0.943 7 C -0.258 4.258 8 N -0.640 5.640 9 Si 0.787 3.213 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.166 1.166 13 N -0.368 5.368 14 C 0.303 3.697 15 O -0.431 6.431 16 C -0.146 4.146 17 C -0.038 4.038 18 C -0.146 4.146 19 C -0.100 4.100 20 C -0.163 4.163 21 C 0.350 3.650 22 N -0.395 5.395 23 O -0.471 6.471 24 C -0.091 4.091 25 C -0.132 4.132 26 C -0.186 4.186 27 C -0.206 4.206 28 C -0.184 4.184 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.202 0.798 35 H 0.066 0.934 36 H 0.248 0.752 37 H 0.159 0.841 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.248 0.752 42 H 0.246 0.754 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.099 0.901 48 H 0.121 0.879 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.703 -21.961 -1.295 22.308 hybrid contribution -0.289 0.978 -1.028 1.448 sum 3.414 -20.982 -2.323 21.385 Atomic orbital electron populations 1.21996 0.91554 1.03746 1.02971 1.19813 0.94629 0.89317 0.84007 1.21202 0.98167 0.90963 0.88126 1.42404 1.61923 1.09287 1.25094 1.18965 1.24679 0.87760 1.04726 0.94263 1.25557 1.02899 0.96764 1.00572 1.69924 1.52055 1.12090 1.29955 0.85337 0.78769 0.79442 0.77790 1.20261 1.22366 1.16639 1.45963 1.07601 1.56456 1.26822 1.20712 0.82372 0.80901 0.85723 1.90720 1.56964 1.43680 1.51721 1.20886 0.91886 1.03579 0.98213 1.19740 0.95025 0.94270 0.94765 1.21223 0.95379 0.97909 1.00114 1.21464 0.93435 0.97580 0.97495 1.19930 0.92342 1.00039 1.04037 1.18459 0.88233 0.80482 0.77813 1.43610 1.12454 1.31599 1.51863 1.90769 1.63717 1.44893 1.47676 1.21322 0.95432 0.96421 0.95910 1.21154 0.92607 1.00222 0.99254 1.22400 1.06518 0.91364 0.98357 1.22935 0.93864 1.01584 1.02213 1.23058 0.96242 0.96208 1.02936 0.88754 0.91025 0.92859 0.96996 0.94624 0.79837 0.93439 0.75160 0.84138 0.86247 0.85272 0.83174 0.75242 0.75450 0.85037 0.83421 0.88976 0.88718 0.90134 0.87932 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.18 71.98 0.59 -2.69 16 2 C 0.21 5.74 0.55 3.60 0.00 5.74 16 3 C 0.14 5.82 4.81 86.38 0.42 6.23 16 4 N -0.74 -34.57 4.98 -343.44 -1.71 -36.28 16 5 C -0.23 -13.56 10.47 84.03 0.88 -12.67 16 6 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 8 N -0.99 -64.21 13.97 21.65 0.30 -63.91 16 9 Si 0.96 43.86 27.73 68.60 1.90 45.76 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.24 -9.41 6.52 99.48 0.65 -8.76 16 13 N -0.71 -16.56 4.17 -422.90 -1.76 -18.33 16 14 C 0.52 13.75 4.86 87.66 0.43 14.18 16 15 O -0.55 -20.39 12.37 -3.03 -0.04 -20.43 16 16 C -0.11 -1.93 5.83 29.11 0.17 -1.76 16 17 C -0.04 -0.84 4.38 -19.81 -0.09 -0.93 16 18 C -0.13 -3.11 9.68 22.23 0.22 -2.89 16 19 C -0.08 -1.79 9.54 22.53 0.21 -1.58 16 20 C -0.16 -3.94 5.87 -20.09 -0.12 -4.05 16 21 C 0.56 14.03 8.05 86.79 0.70 14.73 16 22 N -0.83 -13.10 8.82 -175.60 -1.55 -14.65 16 23 O -0.59 -19.13 17.18 -3.89 -0.07 -19.20 16 24 C -0.07 -1.76 9.60 22.53 0.22 -1.55 16 25 C -0.11 -2.48 9.68 22.23 0.22 -2.27 16 26 C -0.17 -4.13 4.89 -10.79 -0.05 -4.18 16 27 C -0.17 -3.72 8.62 30.62 0.26 -3.45 16 28 C -0.15 -2.49 9.68 30.62 0.30 -2.20 16 29 H 0.09 1.41 6.91 -2.39 -0.02 1.40 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.35 6.86 -2.38 -0.02 1.33 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 1.71 5.63 -2.39 -0.01 1.70 16 34 H 0.37 15.51 4.21 -92.71 -0.39 15.12 16 35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.41 6.55 8.48 -92.71 -0.79 5.76 16 37 H 0.14 1.43 8.08 -2.39 -0.02 1.41 16 38 H 0.12 1.84 8.08 -2.39 -0.02 1.82 16 39 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.15 2.34 6.41 -2.91 -0.02 2.32 16 41 H 0.42 4.41 6.86 -92.71 -0.64 3.77 16 42 H 0.41 5.18 8.93 -92.71 -0.83 4.35 16 43 H 0.13 3.18 7.65 -2.91 -0.02 3.16 16 44 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 45 H 0.09 2.56 8.06 -2.39 -0.02 2.54 16 46 H 0.09 2.01 5.21 -2.39 -0.01 1.99 16 47 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.11 1.45 7.19 -2.39 -0.02 1.43 16 Total: -1.00 -86.74 393.79 0.22 -86.53 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: -1.67 Total: 43.36 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.81 Total: -2.85 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -4.72 Total: -133.17 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.10 Total: -39.63 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Total: -86.74 0.22 -86.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666042308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.370 kcal (2) G-P(sol) polarization free energy of solvation -86.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds