Wall clock time and date at job start Wed Apr 1 2020 03:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46641 * 2 1 4 4 N 1.46503 * 109.46841 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00579 * 264.11719 * 4 3 2 6 6 H 1.08001 * 119.99849 * 188.01722 * 5 4 3 7 7 C 1.38806 * 119.99653 * 8.01540 * 5 4 3 8 8 N 1.31624 * 120.00187 * 25.64955 * 7 5 4 9 9 Si 1.86797 * 119.99756 * 205.64486 * 7 5 4 10 10 H 1.48501 * 109.47209 * 84.99242 * 9 7 5 11 11 H 1.48503 * 109.47137 * 204.98824 * 9 7 5 12 12 H 1.48501 * 109.47516 * 324.99104 * 9 7 5 13 13 C 1.46510 * 119.99362 * 84.12112 * 4 3 2 14 14 C 1.52999 * 109.46707 * 269.99475 * 13 4 3 15 15 N 1.46501 * 109.46736 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99619 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99786 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47439 * 180.02562 * 18 16 15 20 20 H 1.09002 * 110.45207 * 305.70127 * 19 18 16 21 21 C 1.51130 * 110.51248 * 183.09775 * 19 18 16 22 22 C 1.37681 * 132.84875 * 61.19883 * 21 19 18 23 23 C 1.38395 * 119.91639 * 180.02562 * 22 21 19 24 24 C 1.38296 * 119.82378 * 359.92547 * 23 22 21 25 25 C 1.37943 * 120.37504 * 0.05806 * 24 23 22 26 26 C 1.38903 * 106.34249 * 241.21374 * 21 19 18 27 27 N 1.39528 * 110.22673 * 0.02562 * 26 21 19 28 28 C 1.34366 * 112.24881 * 359.97438 * 27 26 21 29 29 O 1.21287 * 126.44200 * 179.97438 * 28 27 26 30 30 H 1.08994 * 109.46940 * 299.99602 * 1 2 3 31 31 H 1.08998 * 109.46998 * 60.00274 * 1 2 3 32 32 H 1.09004 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47251 * 240.00570 * 2 1 3 34 34 H 1.08998 * 109.46998 * 119.99726 * 2 1 3 35 35 H 1.09008 * 109.47176 * 60.00515 * 3 2 1 36 36 H 1.08996 * 109.47706 * 299.99700 * 3 2 1 37 37 H 0.96998 * 119.99826 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.46613 * 149.99763 * 13 4 3 39 39 H 1.08997 * 109.47190 * 29.99460 * 13 4 3 40 40 H 1.09005 * 109.47095 * 60.00424 * 14 13 4 41 41 H 1.08994 * 109.47768 * 300.00062 * 14 13 4 42 42 H 0.97001 * 120.00463 * 0.02562 * 15 14 13 43 43 H 1.08998 * 109.47318 * 60.00438 * 18 16 15 44 44 H 1.09006 * 109.47456 * 300.00330 * 18 16 15 45 45 H 1.07999 * 120.04165 * 0.02562 * 22 21 19 46 46 H 1.07998 * 120.08885 * 179.97438 * 23 22 21 47 47 H 1.08003 * 119.81559 * 180.02562 * 24 23 22 48 48 H 1.08004 * 119.93089 * 179.97438 * 25 24 23 49 49 H 0.96997 * 123.87193 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.5643 1.1805 6 1 5.2614 1.6946 1.1720 7 6 3.5050 1.5204 2.3873 8 7 2.3547 0.8857 2.4690 9 14 4.2165 2.3618 3.8956 10 1 3.8296 3.7955 3.8914 11 1 3.6886 1.7103 5.1212 12 1 5.6971 2.2486 3.8735 13 6 4.2379 1.3125 -1.2613 14 6 4.4931 -0.1677 -1.5524 15 7 5.2255 -0.2979 -2.8145 16 6 5.5630 -1.5188 -3.2749 17 8 5.2601 -2.5097 -2.6446 18 6 6.3169 -1.6527 -4.5729 19 6 6.5720 -3.1330 -4.8642 20 1 7.0726 -3.6066 -4.0197 21 6 7.3932 -3.2910 -6.1231 22 6 8.6564 -2.8722 -6.4758 23 6 9.1576 -3.1714 -7.7306 24 6 8.3872 -3.8918 -8.6251 25 6 7.1213 -4.3129 -8.2741 26 6 6.6091 -4.0140 -7.0130 27 7 5.3785 -4.3217 -6.4317 28 6 5.2741 -3.8456 -5.1796 29 8 4.3192 -3.9638 -4.4412 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 1.8768 0.8547 3.3125 38 1 5.1902 1.8370 -1.1840 39 1 3.6491 1.7455 -2.0698 40 1 3.5407 -0.6923 -1.6297 41 1 5.0819 -0.6009 -0.7439 42 1 5.4681 0.4946 -3.3185 43 1 7.2691 -1.1279 -4.4959 44 1 5.7278 -1.2199 -5.3816 45 1 9.2555 -2.3109 -5.7740 46 1 10.1480 -2.8439 -8.0103 47 1 8.7786 -4.1256 -9.6042 48 1 6.5257 -4.8747 -8.9785 49 1 4.6791 -4.8225 -6.8799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713552846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:32 Heat of formation + Delta-G solvation = -10.109170 kcal Electronic energy + Delta-G solvation = -29850.279066 eV Core-core repulsion = 25778.305398 eV Total energy + Delta-G solvation = -4071.973668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87252 -39.24568 -38.47045 -36.52115 -35.83453 -34.30561 -33.69952 -31.88545 -31.37893 -30.54948 -29.43990 -27.98065 -26.03955 -25.46124 -23.30219 -22.91516 -21.75381 -21.22463 -20.70894 -20.10582 -19.63821 -18.14751 -17.34673 -16.85941 -16.64271 -16.18532 -15.91572 -15.45235 -15.05823 -14.84423 -14.69485 -14.34719 -14.15246 -13.76028 -13.68054 -13.48689 -13.27037 -13.05689 -12.81584 -12.78743 -12.40666 -12.33944 -12.22326 -11.87042 -11.53541 -11.28609 -11.22005 -11.08757 -10.98366 -10.81185 -10.57498 -10.35626 -10.09175 -9.92410 -9.85773 -9.72256 -9.50674 -9.24055 -9.16154 -8.48635 -8.34579 -8.29561 -6.89347 -5.74334 -3.05890 0.82996 0.92772 2.35484 2.75079 2.99896 3.37468 3.41928 3.47556 3.50127 3.53181 3.86712 4.14066 4.45293 4.54294 4.58757 4.66817 4.89249 4.94021 5.01621 5.13345 5.26855 5.33598 5.35669 5.52991 5.59071 5.62105 5.74749 5.90470 5.99165 6.00101 6.10287 6.25589 6.29183 6.30555 6.34781 6.55898 6.60113 6.69710 6.73732 6.74630 6.79073 6.96239 7.08666 7.25504 7.33704 7.70823 7.83630 7.87779 7.89670 8.16186 8.37553 8.62704 9.25650 9.87542 10.32080 11.29019 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.002151 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.225711 B =13016.202177 C =13896.655386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.172 3.828 4 N -0.592 5.592 5 C -0.255 4.255 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.144 3.856 14 C 0.092 3.908 15 N -0.728 5.728 16 C 0.496 3.504 17 O -0.515 6.515 18 C -0.118 4.118 19 C -0.065 4.065 20 H 0.131 0.869 21 C -0.140 4.140 22 C -0.062 4.062 23 C -0.145 4.145 24 C -0.084 4.084 25 C -0.145 4.145 26 C 0.151 3.849 27 N -0.669 5.669 28 C 0.526 3.474 29 O -0.457 6.457 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.022 0.978 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.002 0.998 37 H 0.252 0.748 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.393 0.607 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.125 0.875 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.686 -6.476 -24.520 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.047 3.953 4 N -0.312 5.312 5 C -0.383 4.383 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.034 4.034 15 N -0.380 5.380 16 C 0.280 3.720 17 O -0.390 6.390 18 C -0.158 4.158 19 C -0.086 4.086 20 H 0.149 0.851 21 C -0.143 4.143 22 C -0.080 4.080 23 C -0.164 4.164 24 C -0.103 4.103 25 C -0.166 4.166 26 C 0.054 3.946 27 N -0.314 5.314 28 C 0.312 3.688 29 O -0.326 6.326 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.226 0.774 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.143 0.857 49 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 10.773 -7.203 -23.277 26.641 hybrid contribution 0.092 0.263 0.213 0.350 sum 10.865 -6.940 -23.064 26.423 Atomic orbital electron populations 1.21626 0.98622 0.99316 0.99923 1.22226 0.92881 1.00469 1.01457 1.20924 0.81556 0.94525 0.98329 1.44250 1.01911 1.83638 1.01416 1.19256 0.92210 1.43370 0.83497 0.90792 1.24730 0.97613 1.00179 0.97280 1.70173 1.17192 1.41199 1.24944 0.86372 0.78370 0.79878 0.82656 1.21639 1.22000 1.20801 1.20946 0.96246 0.91861 0.89426 1.22675 0.95984 1.01360 0.83358 1.46140 1.58788 1.07407 1.25655 1.20392 0.80573 0.84031 0.86973 1.90807 1.53143 1.36615 1.58400 1.21462 1.02636 0.94505 0.97245 1.20420 0.93717 0.96964 0.97524 0.85143 1.19836 0.95733 1.03261 0.95469 1.20328 0.93100 0.98067 0.96520 1.21064 1.00517 1.01051 0.93753 1.20884 0.93093 0.96738 0.99584 1.20374 0.97162 1.04882 0.94164 1.18200 0.85750 0.96682 0.94007 1.43913 1.16094 1.55190 1.16155 1.20509 0.89237 0.78750 0.80329 1.90936 1.35118 1.55689 1.50861 0.93013 0.95133 0.94817 0.95976 0.88359 0.89233 0.97933 0.93739 0.93287 0.94029 0.91684 0.91644 0.77441 0.87565 0.88836 0.85220 0.85331 0.85316 0.85711 0.75117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 37.16 0.37 -2.41 16 2 C -0.13 -3.08 5.61 -26.73 -0.15 -3.23 16 3 C 0.17 4.13 4.92 -4.04 -0.02 4.11 16 4 N -0.59 -14.41 2.54 -173.23 -0.44 -14.85 16 5 C -0.25 -6.79 9.70 -15.06 -0.15 -6.94 16 6 H 0.07 1.94 7.94 -52.49 -0.42 1.53 16 7 C 0.00 -0.01 4.89 -17.43 -0.09 -0.09 16 8 N -0.89 -24.75 8.62 55.49 0.48 -24.27 16 9 Si 0.90 21.55 29.62 -169.99 -5.04 16.51 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 14 C 0.09 1.81 5.88 -4.04 -0.02 1.78 16 15 N -0.73 -11.03 5.56 -60.29 -0.33 -11.37 16 16 C 0.50 7.83 7.52 -10.98 -0.08 7.75 16 17 O -0.51 -10.70 13.80 -16.44 -0.23 -10.93 16 18 C -0.12 -1.24 5.23 -27.88 -0.15 -1.38 16 19 C -0.06 -0.72 2.60 -92.37 -0.24 -0.96 16 20 H 0.13 1.56 7.96 -51.93 -0.41 1.15 16 21 C -0.14 -1.23 5.67 -104.37 -0.59 -1.82 16 22 C -0.06 -0.42 10.04 -39.73 -0.40 -0.82 16 23 C -0.14 -0.81 10.07 -39.50 -0.40 -1.21 16 24 C -0.08 -0.46 10.01 -39.67 -0.40 -0.86 16 25 C -0.14 -0.94 10.07 -39.27 -0.40 -1.34 16 26 C 0.15 1.31 7.11 -83.69 -0.60 0.72 16 27 N -0.67 -6.59 5.88 -9.70 -0.06 -6.65 16 28 C 0.53 7.17 7.83 -10.83 -0.08 7.09 16 29 O -0.46 -8.51 15.76 -16.45 -0.26 -8.77 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.51 5.98 -51.93 -0.31 0.20 16 34 H 0.10 2.67 6.33 -51.93 -0.33 2.34 16 35 H 0.09 2.38 5.85 -51.92 -0.30 2.08 16 36 H 0.00 0.06 7.98 -51.93 -0.41 -0.36 16 37 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 39 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 40 H 0.06 1.46 5.92 -51.93 -0.31 1.16 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.39 4.47 8.47 -40.82 -0.35 4.12 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 47 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 48 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 49 H 0.41 3.18 8.96 -40.82 -0.37 2.81 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -34.45 396.73 -10.70 -45.16 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.40 Total: 6.00 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -3.41 Total: 3.18 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.35 Total: -57.13 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.49 Total: -19.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.04 Total: 16.51 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.45 -10.70 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713552846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.050 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds