Wall clock time and date at job start Wed Apr 1 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46641 * 2 1 4 4 N 1.46503 * 109.46841 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00579 * 264.11719 * 4 3 2 6 6 H 1.08001 * 119.99849 * 188.01722 * 5 4 3 7 7 C 1.38806 * 119.99653 * 8.01540 * 5 4 3 8 8 N 1.31624 * 120.00187 * 25.64955 * 7 5 4 9 9 Si 1.86797 * 119.99756 * 205.64486 * 7 5 4 10 10 H 1.48501 * 109.47209 * 84.99242 * 9 7 5 11 11 H 1.48503 * 109.47137 * 204.98824 * 9 7 5 12 12 H 1.48501 * 109.47516 * 324.99104 * 9 7 5 13 13 C 1.46510 * 119.99362 * 84.12112 * 4 3 2 14 14 C 1.52999 * 109.46707 * 269.99475 * 13 4 3 15 15 N 1.46501 * 109.46736 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99619 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99786 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47439 * 180.02562 * 18 16 15 20 20 H 1.09002 * 110.45207 * 305.70127 * 19 18 16 21 21 C 1.51130 * 110.51248 * 183.09775 * 19 18 16 22 22 C 1.37681 * 132.84875 * 61.19883 * 21 19 18 23 23 C 1.38395 * 119.91639 * 180.02562 * 22 21 19 24 24 C 1.38296 * 119.82378 * 359.92547 * 23 22 21 25 25 C 1.37943 * 120.37504 * 0.05806 * 24 23 22 26 26 C 1.38903 * 106.34249 * 241.21374 * 21 19 18 27 27 N 1.39528 * 110.22673 * 0.02562 * 26 21 19 28 28 C 1.34366 * 112.24881 * 359.97438 * 27 26 21 29 29 O 1.21287 * 126.44200 * 179.97438 * 28 27 26 30 30 H 1.08994 * 109.46940 * 299.99602 * 1 2 3 31 31 H 1.08998 * 109.46998 * 60.00274 * 1 2 3 32 32 H 1.09004 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47251 * 240.00570 * 2 1 3 34 34 H 1.08998 * 109.46998 * 119.99726 * 2 1 3 35 35 H 1.09008 * 109.47176 * 60.00515 * 3 2 1 36 36 H 1.08996 * 109.47706 * 299.99700 * 3 2 1 37 37 H 0.96998 * 119.99826 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.46613 * 149.99763 * 13 4 3 39 39 H 1.08997 * 109.47190 * 29.99460 * 13 4 3 40 40 H 1.09005 * 109.47095 * 60.00424 * 14 13 4 41 41 H 1.08994 * 109.47768 * 300.00062 * 14 13 4 42 42 H 0.97001 * 120.00463 * 0.02562 * 15 14 13 43 43 H 1.08998 * 109.47318 * 60.00438 * 18 16 15 44 44 H 1.09006 * 109.47456 * 300.00330 * 18 16 15 45 45 H 1.07999 * 120.04165 * 0.02562 * 22 21 19 46 46 H 1.07998 * 120.08885 * 179.97438 * 23 22 21 47 47 H 1.08003 * 119.81559 * 180.02562 * 24 23 22 48 48 H 1.08004 * 119.93089 * 179.97438 * 25 24 23 49 49 H 0.96997 * 123.87193 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.5643 1.1805 6 1 5.2614 1.6946 1.1720 7 6 3.5050 1.5204 2.3873 8 7 2.3547 0.8857 2.4690 9 14 4.2165 2.3618 3.8956 10 1 3.8296 3.7955 3.8914 11 1 3.6886 1.7103 5.1212 12 1 5.6971 2.2486 3.8735 13 6 4.2379 1.3125 -1.2613 14 6 4.4931 -0.1677 -1.5524 15 7 5.2255 -0.2979 -2.8145 16 6 5.5630 -1.5188 -3.2749 17 8 5.2601 -2.5097 -2.6446 18 6 6.3169 -1.6527 -4.5729 19 6 6.5720 -3.1330 -4.8642 20 1 7.0726 -3.6066 -4.0197 21 6 7.3932 -3.2910 -6.1231 22 6 8.6564 -2.8722 -6.4758 23 6 9.1576 -3.1714 -7.7306 24 6 8.3872 -3.8918 -8.6251 25 6 7.1213 -4.3129 -8.2741 26 6 6.6091 -4.0140 -7.0130 27 7 5.3785 -4.3217 -6.4317 28 6 5.2741 -3.8456 -5.1796 29 8 4.3192 -3.9638 -4.4412 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 1.8768 0.8547 3.3125 38 1 5.1902 1.8370 -1.1840 39 1 3.6491 1.7455 -2.0698 40 1 3.5407 -0.6923 -1.6297 41 1 5.0819 -0.6009 -0.7439 42 1 5.4681 0.4946 -3.3185 43 1 7.2691 -1.1279 -4.4959 44 1 5.7278 -1.2199 -5.3816 45 1 9.2555 -2.3109 -5.7740 46 1 10.1480 -2.8439 -8.0103 47 1 8.7786 -4.1256 -9.6042 48 1 6.5257 -4.8747 -8.9785 49 1 4.6791 -4.8225 -6.8799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713552846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:31 Heat of formation + Delta-G solvation = -32.197948 kcal Electronic energy + Delta-G solvation = -29851.236907 eV Core-core repulsion = 25778.305398 eV Total energy + Delta-G solvation = -4072.931509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.66512 -40.50001 -39.35091 -38.33210 -36.63839 -35.83292 -34.57273 -33.76338 -33.16528 -31.26074 -30.20443 -29.37949 -27.37995 -27.06580 -24.97729 -23.50549 -22.57524 -22.37098 -22.20457 -21.76693 -20.96713 -18.86535 -18.76715 -18.27484 -17.72364 -17.24041 -16.90755 -16.60947 -16.57173 -16.31206 -15.79676 -15.46136 -15.34873 -14.98343 -14.87140 -14.75727 -14.60032 -14.32166 -14.09438 -13.97151 -13.71465 -13.44841 -13.42089 -13.01990 -12.99820 -12.80470 -12.64567 -12.57877 -12.38964 -12.18674 -11.82433 -11.80635 -11.78360 -11.71194 -11.55082 -11.17403 -11.10507 -10.79979 -10.32692 -9.95568 -9.77794 -8.98821 -8.85969 -7.78930 -5.11833 0.22235 0.43924 1.45091 1.49688 1.52085 1.58806 1.75496 2.00086 2.22801 2.58088 2.89776 3.09407 3.28776 3.32430 3.71464 3.75240 3.94686 4.05619 4.19357 4.23181 4.27301 4.37771 4.48018 4.50513 4.51967 4.61289 4.62892 4.68863 4.69560 4.82600 4.83436 4.93465 5.07398 5.10055 5.14405 5.20158 5.28554 5.42478 5.48792 5.52311 5.55538 5.63519 5.66128 5.69588 5.83640 5.86038 6.12389 6.16348 6.36647 6.67928 6.98191 7.21957 7.41737 7.92403 8.32262 9.22270 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.002151 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.225711 B =13016.202177 C =13896.655386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.176 3.824 4 N -0.608 5.608 5 C -0.263 4.263 6 H 0.075 0.925 7 C -0.051 4.051 8 N -0.911 5.911 9 Si 0.957 3.043 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.276 1.276 13 C 0.147 3.853 14 C 0.114 3.886 15 N -0.714 5.714 16 C 0.489 3.511 17 O -0.570 6.570 18 C -0.103 4.103 19 C -0.064 4.064 20 H 0.115 0.885 21 C -0.147 4.147 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.083 4.083 25 C -0.141 4.141 26 C 0.124 3.876 27 N -0.658 5.658 28 C 0.516 3.484 29 O -0.524 6.524 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.017 0.983 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.245 0.755 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.026 0.974 42 H 0.416 0.584 43 H 0.148 0.852 44 H 0.113 0.887 45 H 0.149 0.851 46 H 0.156 0.844 47 H 0.158 0.842 48 H 0.143 0.857 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.257 -5.155 -28.055 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.051 3.949 4 N -0.329 5.329 5 C -0.392 4.392 6 H 0.093 0.907 7 C -0.246 4.246 8 N -0.557 5.557 9 Si 0.787 3.213 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.201 1.201 13 C 0.020 3.980 14 C -0.013 4.013 15 N -0.368 5.368 16 C 0.276 3.724 17 O -0.449 6.449 18 C -0.143 4.143 19 C -0.085 4.085 20 H 0.133 0.867 21 C -0.150 4.150 22 C -0.083 4.083 23 C -0.156 4.156 24 C -0.101 4.101 25 C -0.162 4.162 26 C 0.028 3.972 27 N -0.302 5.302 28 C 0.303 3.697 29 O -0.399 6.399 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.253 0.747 43 H 0.166 0.834 44 H 0.131 0.869 45 H 0.167 0.833 46 H 0.174 0.826 47 H 0.175 0.825 48 H 0.160 0.840 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 13.417 -5.851 -26.919 30.641 hybrid contribution -0.577 -0.218 1.134 1.291 sum 12.840 -6.069 -25.785 29.437 Atomic orbital electron populations 1.21526 0.96098 1.00252 1.00730 1.22027 0.95120 0.99825 0.99087 1.20801 0.81766 0.94400 0.97929 1.44458 1.02290 1.83855 1.02317 1.19507 0.92419 1.42687 0.84592 0.90744 1.25412 0.98440 1.01032 0.99737 1.70353 1.18295 1.42158 1.24919 0.85424 0.77883 0.78629 0.79352 1.21330 1.22944 1.20110 1.21078 0.97055 0.91583 0.88324 1.22049 0.94187 1.00710 0.84368 1.45880 1.58065 1.08655 1.24240 1.21381 0.79817 0.82985 0.88193 1.90796 1.55203 1.38477 1.60397 1.21476 1.03930 0.94752 0.94096 1.20333 0.92885 0.96910 0.98422 0.86691 1.19731 0.96650 1.04593 0.93993 1.20611 0.92205 0.97980 0.97532 1.21465 1.01485 0.99712 0.92936 1.21303 0.92355 0.95668 1.00808 1.20685 0.97820 1.04351 0.93364 1.18454 0.85208 0.98326 0.95230 1.43758 1.17014 1.54312 1.15135 1.20952 0.89288 0.78588 0.80837 1.90892 1.37500 1.58525 1.52932 0.93698 0.92689 0.93868 0.96484 0.92482 0.91926 0.95671 0.94506 0.91546 0.91347 0.94972 0.95528 0.74719 0.83396 0.86857 0.83334 0.82629 0.82463 0.83966 0.74329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 9.91 71.98 0.71 -4.49 16 2 C -0.12 -5.86 5.61 30.60 0.17 -5.69 16 3 C 0.18 8.56 4.92 86.38 0.43 8.98 16 4 N -0.61 -29.88 2.54 -701.98 -1.78 -31.66 16 5 C -0.26 -14.20 9.70 84.03 0.81 -13.38 16 6 H 0.07 3.93 7.94 -2.91 -0.02 3.91 16 7 C -0.05 -2.81 4.89 84.86 0.41 -2.39 16 8 N -0.91 -52.44 8.62 21.65 0.19 -52.25 16 9 Si 0.96 45.16 29.62 68.60 2.03 47.19 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.15 5.67 5.82 86.38 0.50 6.17 16 14 C 0.11 4.62 5.88 86.38 0.51 5.13 16 15 N -0.71 -21.28 5.56 -463.06 -2.57 -23.86 16 16 C 0.49 15.60 7.52 87.66 0.66 16.26 16 17 O -0.57 -25.17 13.80 18.01 0.25 -24.93 16 18 C -0.10 -1.99 5.23 29.85 0.16 -1.83 16 19 C -0.06 -1.42 2.60 -11.93 -0.03 -1.45 16 20 H 0.12 2.88 7.96 -2.39 -0.02 2.86 16 21 C -0.15 -2.29 5.67 -19.70 -0.11 -2.40 16 22 C -0.07 -0.64 10.04 22.18 0.22 -0.42 16 23 C -0.14 -0.92 10.07 22.32 0.22 -0.69 16 24 C -0.08 -0.55 10.01 22.21 0.22 -0.33 16 25 C -0.14 -1.42 10.07 22.47 0.23 -1.19 16 26 C 0.12 1.95 7.11 38.35 0.27 2.22 16 27 N -0.66 -13.05 5.88 -303.22 -1.78 -14.83 16 28 C 0.52 14.74 7.83 87.94 0.69 15.43 16 29 O -0.52 -21.08 15.76 17.99 0.28 -20.79 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.02 0.81 5.98 -2.39 -0.01 0.80 16 34 H 0.06 3.25 6.33 -2.39 -0.02 3.24 16 35 H 0.06 3.40 5.85 -2.38 -0.01 3.39 16 36 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 37 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 38 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 39 H 0.07 2.29 7.95 -2.39 -0.02 2.27 16 40 H 0.03 1.52 5.92 -2.38 -0.01 1.50 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.42 8.46 8.47 -92.71 -0.79 7.67 16 43 H 0.15 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 46 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 47 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 48 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 49 H 0.42 6.64 8.96 -92.71 -0.83 5.81 16 Total: -1.00 -81.51 396.73 2.06 -79.44 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.63 Total: 21.75 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.08 Total: 19.93 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.95 Total: -122.60 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: 0.53 Total: -45.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -81.51 2.06 -79.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713552846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.247 kcal (2) G-P(sol) polarization free energy of solvation -81.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds