Wall clock time and date at job start Wed Apr 1 2020 03:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99941 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99749 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00247 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47250 * 89.99780 * 9 7 5 11 11 H 1.48505 * 109.46924 * 209.99795 * 9 7 5 12 12 H 1.48497 * 109.46881 * 329.99790 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 N 1.46498 * 109.47529 * 179.97438 * 16 14 13 18 18 C 1.34781 * 120.00281 * 179.97438 * 17 16 14 19 19 O 1.21555 * 119.99321 * 359.97438 * 18 17 16 20 20 C 1.47844 * 119.99939 * 180.02562 * 18 17 16 21 21 C 1.39577 * 120.14352 * 359.71580 * 20 18 17 22 22 C 1.37962 * 119.84691 * 179.74472 * 21 20 18 23 23 C 1.38358 * 120.14417 * 0.54087 * 22 21 20 24 24 C 1.38349 * 120.29643 * 359.73989 * 23 22 21 25 25 C 1.37962 * 120.14665 * 359.97361 * 24 23 22 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.52997 * 117.51873 * 225.38768 * 26 2 1 28 28 C 1.52999 * 117.49975 * 294.01828 * 26 2 1 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97004 * 120.00327 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 0.96998 * 119.99859 * 359.97438 * 17 16 14 40 40 H 1.07999 * 120.07566 * 0.02562 * 21 20 18 41 41 H 1.07995 * 119.92394 * 180.27316 * 22 21 20 42 42 H 1.08007 * 119.84947 * 179.71557 * 23 22 21 43 43 H 1.08007 * 119.93092 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.07673 * 180.02562 * 25 24 23 45 45 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 46 46 H 1.09002 * 117.50066 * 214.96678 * 27 26 2 47 47 H 1.09000 * 117.50060 * 359.97438 * 27 26 2 48 48 H 1.09003 * 117.49681 * 359.96892 * 28 26 2 49 49 H 1.09001 * 117.50227 * 144.97817 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0013 8 7 6.2357 3.7685 -0.0024 9 14 6.5117 1.0109 -0.0012 10 1 6.7592 0.5821 -1.4012 11 1 7.8093 1.1886 0.6987 12 1 5.7092 -0.0240 0.6990 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 7 1.9739 -0.0742 4.8345 18 6 2.3948 -0.4718 6.0517 19 8 3.1107 -1.4483 6.1580 20 6 1.9847 0.2792 7.2573 21 6 1.1666 1.4038 7.1380 22 6 0.7833 2.0970 8.2676 23 6 1.2171 1.6861 9.5155 24 6 2.0328 0.5757 9.6402 25 6 2.4187 -0.1299 8.5192 26 6 2.0400 -0.7212 -1.2491 27 6 3.1741 -1.7321 -1.0682 28 6 1.7547 -2.2198 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2057 3.7686 -0.0028 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 1.4023 0.7048 4.7496 40 1 0.8308 1.7280 6.1641 41 1 0.1467 2.9647 8.1771 42 1 0.9178 2.2350 10.3963 43 1 2.3677 0.2600 10.6173 44 1 3.0552 -0.9968 8.6179 45 1 2.0307 -0.1343 -2.1676 46 1 3.9109 -1.8103 -1.8677 47 1 3.5574 -1.8833 -0.0591 48 1 1.2041 -2.6921 -0.5520 49 1 1.5575 -2.6188 -2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715123019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:17 Heat of formation + Delta-G solvation = 7.929835 kcal Electronic energy + Delta-G solvation = -30583.006786 eV Core-core repulsion = 26511.815348 eV Total energy + Delta-G solvation = -4071.191438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.69124 -40.09412 -38.50807 -37.81121 -34.89962 -34.44815 -33.56027 -31.93281 -31.40392 -31.16059 -30.44047 -27.69011 -26.02341 -23.96595 -23.29788 -22.68596 -22.37056 -21.79974 -20.99497 -20.57090 -19.15273 -18.75342 -17.63190 -17.15211 -16.46155 -16.06433 -15.86746 -15.55489 -15.10673 -15.03914 -14.68110 -14.60414 -14.48483 -14.06641 -13.92456 -13.73733 -13.34943 -13.14044 -12.97839 -12.77675 -12.56211 -12.54223 -12.38051 -11.92238 -11.84217 -11.75712 -11.50801 -11.34201 -11.16306 -10.91051 -10.80696 -10.28115 -10.15379 -10.13087 -10.07595 -9.64125 -9.55735 -9.37853 -9.24618 -9.11866 -8.86372 -8.79137 -7.15582 -5.73723 -3.07280 0.62922 1.11674 2.62600 2.73371 2.78312 3.33805 3.36259 3.41362 3.44262 3.67464 3.81411 4.47110 4.54170 4.59048 4.60009 4.68542 4.71431 4.86872 4.88751 4.90306 5.11656 5.12424 5.19039 5.24260 5.35682 5.40796 5.55612 5.57234 5.57711 5.59969 5.72315 5.76336 5.91723 5.97489 6.00742 6.06150 6.07309 6.13053 6.14857 6.18009 6.21119 6.39530 6.41830 6.61796 6.72720 6.92971 7.37663 7.55695 8.04335 8.05997 8.26104 8.45566 9.25958 9.97888 10.19122 11.45229 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003177 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.215718 B = 8811.079669 C = 9996.186062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.196 3.804 3 C 0.146 3.854 4 N -0.750 5.750 5 C -0.236 4.236 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.715 5.715 14 C 0.519 3.481 15 O -0.526 6.526 16 C 0.098 3.902 17 N -0.708 5.708 18 C 0.561 3.439 19 O -0.541 6.541 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.131 4.131 25 C -0.060 4.060 26 C -0.140 4.140 27 C -0.184 4.184 28 C -0.181 4.181 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.360 0.640 35 H 0.258 0.742 36 H 0.397 0.603 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.413 0.587 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.987 -11.786 11.399 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.111 3.889 3 C 0.018 3.982 4 N -0.395 5.395 5 C -0.366 4.366 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.206 1.206 13 N -0.370 5.370 14 C 0.304 3.696 15 O -0.403 6.403 16 C -0.029 4.029 17 N -0.364 5.364 18 C 0.348 3.652 19 O -0.419 6.419 20 C -0.135 4.135 21 C -0.101 4.101 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.149 4.149 25 C -0.079 4.079 26 C -0.159 4.159 27 C -0.221 4.221 28 C -0.218 4.218 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.193 0.807 35 H 0.068 0.932 36 H 0.234 0.766 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.252 0.748 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.139 0.861 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.929 -11.512 11.503 21.421 hybrid contribution 1.032 -1.062 -0.253 1.503 sum -12.896 -12.574 11.250 21.237 Atomic orbital electron populations 1.22078 0.93697 1.01823 1.03504 1.20194 0.93744 0.93241 0.81720 1.21096 0.85329 0.91362 1.00365 1.42579 1.00640 1.05186 1.91128 1.19065 0.89450 0.85923 1.42153 0.89334 1.24633 0.96088 0.96040 1.02489 1.69695 1.06883 1.23760 1.58087 0.86588 0.79808 0.84694 0.77647 1.21140 1.21857 1.20630 1.46125 1.57972 1.27424 1.05462 1.20196 0.80597 0.84236 0.84542 1.90632 1.38032 1.25679 1.85940 1.21096 1.01750 0.96406 0.83676 1.45558 1.52935 1.33041 1.04835 1.18253 0.79888 0.84051 0.82981 1.90769 1.37203 1.27275 1.86660 1.19892 1.02128 0.97871 0.93646 1.21445 0.95514 0.93656 0.99510 1.21150 1.00739 1.00332 0.92281 1.21396 0.96190 0.96078 0.97720 1.21161 0.98963 0.96093 0.98663 1.21292 0.96852 0.98931 0.90835 1.22498 1.02658 0.91211 0.99498 1.22997 0.92083 1.04167 1.02846 1.23008 0.98836 0.97017 1.02915 0.92815 0.90510 0.91580 0.94978 0.92562 0.80662 0.93176 0.76573 0.88567 0.88059 0.74800 0.85176 0.85211 0.85570 0.85321 0.84627 0.86099 0.88238 0.88975 0.88912 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.37 37.15 0.31 -1.63 16 2 C 0.20 2.88 0.52 -131.82 -0.07 2.81 16 3 C 0.15 2.87 4.89 -4.04 -0.02 2.85 16 4 N -0.75 -17.56 5.03 -59.90 -0.30 -17.86 16 5 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 6 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 7 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 8 N -0.94 -29.82 13.97 55.49 0.78 -29.05 16 9 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 13 N -0.72 -9.82 4.49 -47.61 -0.21 -10.03 16 14 C 0.52 7.71 7.31 -10.99 -0.08 7.63 16 15 O -0.53 -9.01 11.91 5.55 0.07 -8.94 16 16 C 0.10 1.30 6.16 -5.20 -0.03 1.27 16 17 N -0.71 -9.55 5.48 -62.43 -0.34 -9.89 16 18 C 0.56 8.02 7.77 -12.33 -0.10 7.93 16 19 O -0.54 -9.15 16.35 5.32 0.09 -9.06 16 20 C -0.13 -1.61 5.87 -104.97 -0.62 -2.23 16 21 C -0.08 -0.86 9.54 -39.18 -0.37 -1.23 16 22 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 23 C -0.10 -0.77 10.04 -39.50 -0.40 -1.16 16 24 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 25 C -0.06 -0.66 9.60 -39.18 -0.38 -1.03 16 26 C -0.14 -1.85 4.48 -90.63 -0.41 -2.26 16 27 C -0.18 -2.30 8.98 -26.73 -0.24 -2.54 16 28 C -0.18 -1.84 9.53 -26.73 -0.25 -2.10 16 29 H 0.05 0.59 7.72 -51.93 -0.40 0.19 16 30 H 0.08 1.09 6.37 -51.93 -0.33 0.76 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.23 5.99 -51.93 -0.31 0.92 16 34 H 0.36 8.11 4.29 -40.82 -0.18 7.94 16 35 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 36 H 0.40 4.65 5.64 -40.82 -0.23 4.41 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.41 5.31 5.47 -40.82 -0.22 5.09 16 40 H 0.13 1.23 6.41 -52.49 -0.34 0.90 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 43 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 44 H 0.14 1.47 7.65 -52.49 -0.40 1.06 16 45 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.09 1.14 5.96 -51.93 -0.31 0.83 16 48 H 0.09 0.86 7.99 -51.93 -0.42 0.44 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -35.42 395.81 -9.33 -44.75 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -6.95 Total: 18.21 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.70 Total: -1.66 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.08 Total: -66.83 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.15 Total: -18.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.42 -9.33 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715123019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.678 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds