Wall clock time and date at job start Wed Apr 1 2020 03:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99941 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99749 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00247 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47250 * 89.99780 * 9 7 5 11 11 H 1.48505 * 109.46924 * 209.99795 * 9 7 5 12 12 H 1.48497 * 109.46881 * 329.99790 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 N 1.46498 * 109.47529 * 179.97438 * 16 14 13 18 18 C 1.34781 * 120.00281 * 179.97438 * 17 16 14 19 19 O 1.21555 * 119.99321 * 359.97438 * 18 17 16 20 20 C 1.47844 * 119.99939 * 180.02562 * 18 17 16 21 21 C 1.39577 * 120.14352 * 359.71580 * 20 18 17 22 22 C 1.37962 * 119.84691 * 179.74472 * 21 20 18 23 23 C 1.38358 * 120.14417 * 0.54087 * 22 21 20 24 24 C 1.38349 * 120.29643 * 359.73989 * 23 22 21 25 25 C 1.37962 * 120.14665 * 359.97361 * 24 23 22 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.52997 * 117.51873 * 225.38768 * 26 2 1 28 28 C 1.52999 * 117.49975 * 294.01828 * 26 2 1 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97004 * 120.00327 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 0.96998 * 119.99859 * 359.97438 * 17 16 14 40 40 H 1.07999 * 120.07566 * 0.02562 * 21 20 18 41 41 H 1.07995 * 119.92394 * 180.27316 * 22 21 20 42 42 H 1.08007 * 119.84947 * 179.71557 * 23 22 21 43 43 H 1.08007 * 119.93092 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.07673 * 180.02562 * 25 24 23 45 45 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 46 46 H 1.09002 * 117.50066 * 214.96678 * 27 26 2 47 47 H 1.09000 * 117.50060 * 359.97438 * 27 26 2 48 48 H 1.09003 * 117.49681 * 359.96892 * 28 26 2 49 49 H 1.09001 * 117.50227 * 144.97817 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0013 8 7 6.2357 3.7685 -0.0024 9 14 6.5117 1.0109 -0.0012 10 1 6.7592 0.5821 -1.4012 11 1 7.8093 1.1886 0.6987 12 1 5.7092 -0.0240 0.6990 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 7 1.9739 -0.0742 4.8345 18 6 2.3948 -0.4718 6.0517 19 8 3.1107 -1.4483 6.1580 20 6 1.9847 0.2792 7.2573 21 6 1.1666 1.4038 7.1380 22 6 0.7833 2.0970 8.2676 23 6 1.2171 1.6861 9.5155 24 6 2.0328 0.5757 9.6402 25 6 2.4187 -0.1299 8.5192 26 6 2.0400 -0.7212 -1.2491 27 6 3.1741 -1.7321 -1.0682 28 6 1.7547 -2.2198 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2057 3.7686 -0.0028 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 1.4023 0.7048 4.7496 40 1 0.8308 1.7280 6.1641 41 1 0.1467 2.9647 8.1771 42 1 0.9178 2.2350 10.3963 43 1 2.3677 0.2600 10.6173 44 1 3.0552 -0.9968 8.6179 45 1 2.0307 -0.1343 -2.1676 46 1 3.9109 -1.8103 -1.8677 47 1 3.5574 -1.8833 -0.0591 48 1 1.2041 -2.6921 -0.5520 49 1 1.5575 -2.6188 -2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715123019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:16 Heat of formation + Delta-G solvation = -16.716146 kcal Electronic energy + Delta-G solvation = -30584.075516 eV Core-core repulsion = 26511.815348 eV Total energy + Delta-G solvation = -4072.260168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.83213 -41.11202 -39.42336 -38.90186 -36.45374 -35.72675 -34.92138 -33.52626 -32.53697 -31.94735 -31.84322 -28.73473 -27.70491 -24.97998 -24.48062 -23.73305 -23.41982 -23.20774 -22.04242 -21.58593 -20.51429 -19.73539 -19.58503 -18.13835 -17.53725 -17.02128 -16.98928 -16.77477 -16.51179 -16.03082 -15.96677 -15.86131 -15.51763 -15.40255 -14.98476 -14.93316 -14.56883 -14.28358 -14.22993 -14.14713 -13.93097 -13.82748 -13.48987 -13.39264 -13.01235 -12.83110 -12.64251 -12.50678 -12.36826 -12.20667 -12.08223 -12.04441 -11.84739 -11.24106 -11.19731 -11.11611 -11.06562 -10.73009 -10.44063 -10.04694 -9.97714 -9.92309 -9.25528 -8.04424 -5.35745 -0.18610 0.39150 1.29318 1.35392 1.42447 1.46306 1.69867 1.76093 2.33087 2.44719 2.87032 2.88309 3.26288 3.44175 3.55814 3.63043 3.67649 3.87863 3.89600 3.99584 3.99969 4.19490 4.20900 4.23643 4.26412 4.44755 4.50846 4.51140 4.53802 4.70565 4.81447 4.83558 4.86604 4.94067 5.03184 5.03734 5.09014 5.14291 5.20454 5.28418 5.32169 5.35727 5.42457 5.48519 5.57750 5.74333 5.92784 6.19164 6.31233 6.43738 6.98013 7.07481 7.11949 7.83207 8.06862 9.17823 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003177 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.215718 B = 8811.079669 C = 9996.186062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.206 3.794 3 C 0.143 3.857 4 N -0.744 5.744 5 C -0.229 4.229 6 H 0.048 0.952 7 C -0.064 4.064 8 N -0.986 5.986 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.249 1.249 13 N -0.708 5.708 14 C 0.516 3.484 15 O -0.553 6.553 16 C 0.100 3.900 17 N -0.708 5.708 18 C 0.558 3.442 19 O -0.574 6.574 20 C -0.158 4.158 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.076 4.076 26 C -0.164 4.164 27 C -0.199 4.199 28 C -0.142 4.142 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.409 0.591 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.414 0.586 40 H 0.131 0.869 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.129 0.871 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -14.367 12.201 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.120 3.880 3 C 0.016 3.984 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.066 0.934 7 C -0.255 4.255 8 N -0.637 5.637 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.227 1.227 12 H -0.174 1.174 13 N -0.363 5.363 14 C 0.302 3.698 15 O -0.431 6.431 16 C -0.027 4.027 17 N -0.362 5.362 18 C 0.347 3.653 19 O -0.456 6.456 20 C -0.161 4.161 21 C -0.111 4.111 22 C -0.148 4.148 23 C -0.106 4.106 24 C -0.147 4.147 25 C -0.095 4.095 26 C -0.182 4.182 27 C -0.236 4.236 28 C -0.179 4.179 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.202 0.798 35 H 0.065 0.935 36 H 0.249 0.751 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.254 0.746 40 H 0.149 0.851 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.146 0.854 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.128 0.872 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.162 -14.134 12.286 24.096 hybrid contribution 1.304 -0.107 -0.468 1.390 sum -13.858 -14.241 11.819 23.120 Atomic orbital electron populations 1.22008 0.91953 1.03329 1.03008 1.19988 0.94886 0.90172 0.82923 1.21184 0.83073 0.95305 0.98823 1.42455 1.02139 1.03664 1.90723 1.19013 0.89750 0.86452 1.40792 0.93356 1.25466 0.97086 1.00077 1.02908 1.69892 1.07036 1.26674 1.60075 0.85482 0.77876 0.80523 0.78416 1.19760 1.22701 1.17395 1.46066 1.57758 1.27680 1.04814 1.20488 0.80224 0.83878 0.85229 1.90630 1.39268 1.26841 1.86372 1.21142 1.01123 0.97563 0.82920 1.45601 1.52701 1.33049 1.04871 1.18655 0.79235 0.83743 0.83660 1.90732 1.38869 1.28806 1.87150 1.19879 1.04031 0.98983 0.93194 1.21563 0.95567 0.93501 1.00487 1.21499 1.00608 1.00670 0.92035 1.21829 0.94724 0.95484 0.98559 1.21496 0.98400 0.95793 0.98990 1.21410 0.97370 0.99388 0.91314 1.22394 1.04723 0.92974 0.98130 1.23108 0.93156 1.04332 1.03008 1.23085 0.96577 0.93692 1.04524 0.90197 0.92327 0.90818 0.95507 0.94962 0.79763 0.93463 0.75078 0.86016 0.88872 0.74588 0.85073 0.82919 0.82258 0.82645 0.85351 0.87032 0.88356 0.88847 0.87207 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.37 71.98 0.60 -2.82 16 2 C 0.21 5.75 0.52 3.60 0.00 5.75 16 3 C 0.14 5.69 4.89 86.38 0.42 6.12 16 4 N -0.74 -34.98 5.03 -343.44 -1.73 -36.70 16 5 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 7 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 8 N -0.99 -64.87 13.97 21.65 0.30 -64.57 16 9 Si 0.95 45.97 27.74 68.60 1.90 47.87 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 12 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 13 N -0.71 -18.19 4.49 -422.94 -1.90 -20.09 16 14 C 0.52 14.98 7.31 87.66 0.64 15.62 16 15 O -0.55 -19.13 11.91 -3.04 -0.04 -19.17 16 16 C 0.10 2.59 6.16 85.63 0.53 3.11 16 17 N -0.71 -19.34 5.48 -469.70 -2.57 -21.91 16 18 C 0.56 16.34 7.77 86.79 0.67 17.02 16 19 O -0.57 -19.86 16.35 -3.89 -0.06 -19.93 16 20 C -0.16 -3.89 5.87 -20.09 -0.12 -4.01 16 21 C -0.09 -1.90 9.54 22.53 0.21 -1.69 16 22 C -0.13 -2.04 10.03 22.23 0.22 -1.81 16 23 C -0.09 -1.16 10.04 22.32 0.22 -0.94 16 24 C -0.13 -1.98 10.03 22.23 0.22 -1.76 16 25 C -0.08 -1.65 9.60 22.53 0.22 -1.43 16 26 C -0.16 -3.93 4.48 -10.80 -0.05 -3.98 16 27 C -0.20 -4.34 8.98 30.59 0.27 -4.06 16 28 C -0.14 -2.30 9.53 30.59 0.29 -2.01 16 29 H 0.08 1.49 7.72 -2.39 -0.02 1.47 16 30 H 0.06 1.62 6.37 -2.39 -0.02 1.61 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 1.46 5.99 -2.39 -0.01 1.45 16 34 H 0.37 16.10 4.29 -92.71 -0.40 15.70 16 35 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.41 8.44 5.64 -92.71 -0.52 7.92 16 37 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.41 10.97 5.47 -92.71 -0.51 10.47 16 40 H 0.13 2.54 6.41 -2.91 -0.02 2.52 16 41 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 42 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 2.87 7.65 -2.91 -0.02 2.84 16 45 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 2.00 5.96 -2.39 -0.01 1.98 16 48 H 0.11 1.46 7.99 -2.39 -0.02 1.44 16 49 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -80.38 395.81 1.14 -79.24 By element: Atomic # 1 Polarization: 48.66 SS G_CDS: -0.49 Total: 48.17 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.72 Total: 7.08 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -5.90 Total: -143.28 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.10 Total: -39.09 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -80.38 1.14 -79.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715123019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.527 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds