Wall clock time and date at job start Wed Apr 1 2020 04:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47065 * 2 1 4 4 N 1.27944 * 119.99832 * 94.99779 * 3 2 1 5 5 Si 1.86798 * 120.00208 * 274.99950 * 3 2 1 6 6 H 1.48500 * 109.46864 * 89.99761 * 5 3 2 7 7 H 1.48490 * 109.47159 * 209.99940 * 5 3 2 8 8 H 1.48499 * 109.46857 * 330.00244 * 5 3 2 9 9 C 1.50698 * 109.47227 * 119.99966 * 2 1 3 10 10 O 1.21275 * 120.00254 * 276.07668 * 9 2 1 11 11 N 1.34777 * 119.99979 * 96.07170 * 9 2 1 12 12 C 1.47428 * 125.64875 * 175.52837 * 11 9 2 13 13 C 1.54906 * 104.83087 * 204.16350 * 12 11 9 14 14 C 1.55164 * 101.58269 * 322.98817 * 13 12 11 15 15 C 1.53001 * 110.87162 * 277.06942 * 14 13 12 16 16 C 1.53004 * 110.71910 * 153.86596 * 14 13 12 17 17 N 1.46494 * 109.47058 * 66.48019 * 16 14 13 18 18 C 1.34775 * 120.00053 * 180.02562 * 17 16 14 19 19 O 1.21786 * 119.99911 * 359.97438 * 18 17 16 20 20 C 1.41520 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.35620 * 119.99882 * 188.07716 * 20 18 17 22 22 C 1.41673 * 119.99456 * 33.36368 * 21 20 18 23 23 C 1.38289 * 126.25664 * 185.19237 * 22 21 20 24 24 C 1.39781 * 107.07997 * 179.97438 * 23 22 21 25 25 C 1.35508 * 107.90828 * 0.02562 * 24 23 22 26 26 N 1.35752 * 108.91116 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.68680 * 180.02562 * 26 25 24 28 28 C 1.47020 * 125.64915 * 355.56558 * 11 9 2 29 29 H 1.08998 * 109.47173 * 61.98837 * 1 2 3 30 30 H 1.09004 * 109.46630 * 181.98806 * 1 2 3 31 31 H 1.08994 * 109.46930 * 301.98854 * 1 2 3 32 32 H 1.09002 * 109.47267 * 240.00082 * 2 1 3 33 33 H 0.96996 * 119.99825 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.36790 * 323.00290 * 12 11 9 35 35 H 1.09005 * 110.36594 * 85.21810 * 12 11 9 36 36 H 1.08998 * 111.00594 * 204.91648 * 13 12 11 37 37 H 1.09001 * 111.00436 * 81.06529 * 13 12 11 38 38 H 1.09003 * 109.46856 * 296.04976 * 15 14 13 39 39 H 1.08999 * 109.46902 * 56.05050 * 15 14 13 40 40 H 1.09002 * 109.46786 * 176.04858 * 15 14 13 41 41 H 1.09000 * 109.47154 * 306.47799 * 16 14 13 42 42 H 1.09001 * 109.46750 * 186.47926 * 16 14 13 43 43 H 0.97004 * 120.00195 * 359.97438 * 17 16 14 44 44 H 1.08000 * 120.00065 * 8.08654 * 20 18 17 45 45 H 1.07991 * 120.00371 * 213.35287 * 21 20 18 46 46 H 1.07999 * 126.45793 * 0.02562 * 23 22 21 47 47 H 1.08001 * 126.04526 * 180.02562 * 24 23 22 48 48 H 1.08001 * 125.53953 * 180.26068 * 25 24 23 49 49 H 1.08999 * 109.88013 * 59.49152 * 28 11 9 50 50 H 1.09003 * 109.88392 * 298.32448 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3366 1.9918 1.1038 5 14 2.2108 2.3485 -1.6115 6 1 0.9430 3.0591 -1.9165 7 1 3.3153 3.3342 -1.4956 8 1 2.5157 1.3894 -2.7035 9 6 2.0324 -0.7104 1.2304 10 8 2.1297 -0.1103 2.2798 11 7 2.3734 -2.0126 1.1647 12 6 2.9637 -2.8027 2.2606 13 6 3.7170 -3.9580 1.5554 14 6 2.7665 -4.2719 0.3699 15 6 1.6312 -5.1976 0.8118 16 6 3.5414 -4.8877 -0.7969 17 7 4.0479 -6.2054 -0.4054 18 6 4.7656 -6.9384 -1.2794 19 8 4.9928 -6.5055 -2.3948 20 6 5.2554 -8.2111 -0.9010 21 6 6.1116 -8.8775 -1.7146 22 6 7.0456 -8.1588 -2.5009 23 6 7.9045 -8.6939 -3.4434 24 6 8.6429 -7.6329 -3.9754 25 6 8.2348 -6.4940 -3.3650 26 7 7.2648 -6.7999 -2.4658 27 1 6.8024 -6.1666 -1.8949 28 6 2.2192 -2.8804 -0.0120 29 1 -0.3633 0.4826 -0.9073 30 1 -0.3633 -1.0271 0.0357 31 1 -0.3633 0.5444 0.8716 32 1 1.8934 -0.5138 -0.8900 33 1 2.6596 2.9064 1.1039 34 1 3.6590 -2.1921 2.8366 35 1 2.1806 -3.1976 2.9080 36 1 3.8164 -4.8198 2.2152 37 1 4.6921 -3.6275 1.1975 38 1 2.0444 -6.1588 1.1176 39 1 1.1005 -4.7468 1.6504 40 1 0.9401 -5.3465 -0.0179 41 1 4.3780 -4.2402 -1.0594 42 1 2.8800 -4.9934 -1.6568 43 1 3.8673 -6.5500 0.4832 44 1 4.9471 -8.6518 0.0356 45 1 6.0816 -9.9559 -1.7631 46 1 7.9884 -9.7352 -3.7174 47 1 9.4039 -7.7076 -4.7380 48 1 8.6163 -5.5035 -3.5644 49 1 2.7882 -2.4751 -0.8486 50 1 1.1655 -2.9574 -0.2803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722235278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:46 Heat of formation + Delta-G solvation = 46.207876 kcal Electronic energy + Delta-G solvation = -30709.817639 eV Core-core repulsion = 26626.630322 eV Total energy + Delta-G solvation = -4083.187317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.24035 -41.56290 -40.54784 -39.36353 -36.78853 -36.00775 -34.69436 -33.77986 -32.99796 -31.77516 -30.87331 -29.50665 -28.25199 -27.13334 -26.17118 -24.48259 -24.12635 -21.98466 -21.72123 -21.21500 -20.80914 -20.41068 -19.59199 -19.09673 -18.66317 -17.66857 -17.28408 -16.94166 -16.45337 -16.24057 -16.11760 -15.52515 -15.41760 -15.21684 -15.09191 -14.98968 -14.75060 -14.66271 -14.53731 -14.45242 -14.10967 -13.92459 -13.81479 -13.58763 -13.44286 -13.16352 -13.10700 -13.07806 -12.92754 -12.85333 -12.81064 -12.47638 -12.27542 -12.24265 -11.93519 -11.83229 -11.42417 -11.06641 -10.72543 -10.66380 -10.17987 -9.67277 -9.64339 -9.51889 -8.43638 -0.48399 0.81522 0.97499 1.32052 1.64044 1.70600 1.74178 1.85473 2.00498 2.06609 2.23468 2.45870 2.61195 3.12435 3.22130 3.39682 3.40910 3.79308 3.82868 3.94460 4.01894 4.05301 4.07366 4.11016 4.12663 4.31035 4.33039 4.39163 4.44406 4.50015 4.50797 4.56433 4.57306 4.60432 4.64667 4.68555 4.73996 4.76428 4.84713 4.88709 4.95109 5.01342 5.07543 5.08556 5.14575 5.29800 5.32023 5.41393 5.43026 6.05411 6.23263 6.44472 6.54624 6.72394 6.94913 7.20298 7.39209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C -0.016 4.016 4 N -0.581 5.581 5 Si 0.932 3.068 6 H -0.236 1.236 7 H -0.245 1.245 8 H -0.233 1.233 9 C 0.532 3.468 10 O -0.492 6.492 11 N -0.626 5.626 12 C 0.109 3.891 13 C -0.125 4.125 14 C -0.086 4.086 15 C -0.140 4.140 16 C 0.135 3.865 17 N -0.726 5.726 18 C 0.547 3.453 19 O -0.554 6.554 20 C -0.309 4.309 21 C 0.065 3.935 22 C -0.007 4.007 23 C -0.135 4.135 24 C -0.217 4.217 25 C 0.027 3.973 26 N -0.511 5.511 27 H 0.417 0.583 28 C 0.111 3.889 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.334 0.666 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.401 0.599 44 H 0.135 0.865 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.165 0.835 49 H 0.073 0.927 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -3.127 -1.220 3.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.266 4.266 4 N -0.193 5.193 5 Si 0.747 3.253 6 H -0.159 1.159 7 H -0.168 1.168 8 H -0.155 1.155 9 C 0.319 3.681 10 O -0.363 6.363 11 N -0.363 5.363 12 C -0.014 4.014 13 C -0.163 4.163 14 C -0.087 4.087 15 C -0.197 4.197 16 C 0.011 3.989 17 N -0.378 5.378 18 C 0.341 3.659 19 O -0.436 6.436 20 C -0.331 4.331 21 C 0.045 3.955 22 C -0.117 4.117 23 C -0.161 4.161 24 C -0.241 4.241 25 C -0.111 4.111 26 N -0.107 5.107 27 H 0.260 0.740 28 C -0.013 4.013 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.237 0.763 44 H 0.153 0.847 45 H 0.165 0.835 46 H 0.161 0.839 47 H 0.157 0.843 48 H 0.183 0.817 49 H 0.091 0.909 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.619 -2.062 -1.007 2.377 hybrid contribution -0.232 0.485 0.295 0.613 sum -0.850 -1.577 -0.713 1.928 Atomic orbital electron populations 1.21638 0.90767 1.03221 1.03730 1.20617 0.98598 0.93122 0.97597 1.29945 0.95522 0.98695 1.02454 1.68446 1.05509 1.14761 1.30615 0.85743 0.82536 0.80604 0.76406 1.15913 1.16825 1.15498 1.20047 0.77926 0.79635 0.90462 1.90793 1.51033 1.64088 1.30383 1.48562 1.64402 1.09435 1.13937 1.22161 0.97048 0.92067 0.90082 1.22946 0.98289 0.98510 0.96539 1.21847 0.96340 0.94836 0.95650 1.21850 0.97132 0.98553 1.02162 1.21272 0.97815 0.83731 0.96071 1.45974 1.56136 1.18684 1.17026 1.17204 0.78954 0.84800 0.84910 1.90874 1.59717 1.72422 1.20592 1.21720 1.09656 0.98448 1.03289 1.20882 0.87689 0.99582 0.87355 1.18263 1.03490 0.83612 1.06375 1.21584 0.97970 0.99457 0.97074 1.20891 1.05571 0.92156 1.05472 1.22178 0.94494 1.00160 0.94304 1.42665 1.29228 1.07631 1.31192 0.73978 1.22026 1.01406 0.88890 0.88956 0.90852 0.91343 0.91122 0.87843 0.84886 0.90343 0.91361 0.89555 0.90201 0.92054 0.91623 0.91633 0.91183 0.90823 0.76317 0.84695 0.83484 0.83944 0.84265 0.81728 0.90895 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.20 9.09 37.16 0.34 0.54 16 2 C -0.08 0.02 2.31 -92.92 -0.21 -0.20 16 3 C -0.02 -0.01 4.83 -13.90 -0.07 -0.08 16 4 N -0.58 -1.83 11.40 56.23 0.64 -1.19 16 5 Si 0.93 -1.23 29.33 -169.99 -4.99 -6.22 16 6 H -0.24 0.20 7.11 56.52 0.40 0.60 16 7 H -0.25 0.06 7.11 56.52 0.40 0.46 16 8 H -0.23 0.39 7.11 56.52 0.40 0.79 16 9 C 0.53 1.37 6.80 -10.99 -0.07 1.29 16 10 O -0.49 -3.44 15.10 5.56 0.08 -3.35 16 11 N -0.63 0.03 3.33 -170.52 -0.57 -0.54 16 12 C 0.11 -0.08 6.58 -2.53 -0.02 -0.10 16 13 C -0.12 0.42 5.72 -24.58 -0.14 0.27 16 14 C -0.09 0.32 0.61 -152.67 -0.09 0.23 16 15 C -0.14 0.57 8.23 37.16 0.31 0.88 16 16 C 0.14 -0.36 4.49 -4.04 -0.02 -0.38 16 17 N -0.73 1.81 5.11 -63.25 -0.32 1.48 16 18 C 0.55 0.24 6.33 -15.01 -0.10 0.15 16 19 O -0.55 -2.15 12.71 5.11 0.06 -2.09 16 20 C -0.31 0.25 9.72 -39.27 -0.38 -0.13 16 21 C 0.07 -0.01 9.75 -39.21 -0.38 -0.39 16 22 C -0.01 -0.01 5.99 -83.90 -0.50 -0.52 16 23 C -0.14 -0.26 10.86 -38.99 -0.42 -0.69 16 24 C -0.22 -0.42 10.81 -39.98 -0.43 -0.85 16 25 C 0.03 0.04 11.90 -16.79 -0.20 -0.16 16 26 N -0.51 -1.08 4.55 -10.56 -0.05 -1.13 16 27 H 0.42 0.67 6.03 -40.82 -0.25 0.43 16 28 C 0.11 -0.33 5.35 -3.07 -0.02 -0.34 16 29 H 0.07 -0.24 7.99 -51.93 -0.42 -0.65 16 30 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 32 H 0.10 -0.31 6.57 -51.93 -0.34 -0.65 16 33 H 0.33 0.40 8.23 -40.82 -0.34 0.07 16 34 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 35 H 0.07 -0.05 7.75 -51.93 -0.40 -0.46 16 36 H 0.09 -0.39 8.04 -51.93 -0.42 -0.81 16 37 H 0.08 -0.22 8.02 -51.93 -0.42 -0.63 16 38 H 0.06 -0.29 6.76 -51.93 -0.35 -0.64 16 39 H 0.06 -0.22 7.49 -51.93 -0.39 -0.61 16 40 H 0.06 -0.25 8.14 -51.93 -0.42 -0.67 16 41 H 0.07 -0.13 8.10 -51.93 -0.42 -0.55 16 42 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 43 H 0.40 -1.79 6.99 -40.82 -0.29 -2.07 16 44 H 0.14 -0.45 8.06 -52.49 -0.42 -0.87 16 45 H 0.15 -0.43 8.06 -52.49 -0.42 -0.85 16 46 H 0.14 -0.03 8.06 -52.49 -0.42 -0.45 16 47 H 0.14 0.04 8.06 -52.49 -0.42 -0.38 16 48 H 0.17 -0.19 8.06 -52.49 -0.42 -0.61 16 49 H 0.07 -0.27 7.32 -51.93 -0.38 -0.65 16 50 H 0.08 -0.29 7.84 -51.93 -0.41 -0.70 16 LS Contribution 400.27 15.07 6.03 6.03 Total: 0.00 -9.89 400.27 -9.35 -19.23 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -7.83 Total: -11.77 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.41 Total: -0.46 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -0.30 Total: -1.37 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.15 Total: -5.44 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -4.99 Total: -6.22 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -9.89 -9.35 -19.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722235278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.440 kcal (2) G-P(sol) polarization free energy of solvation -9.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds