Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47065 * 2 1 4 4 N 1.27944 * 119.99832 * 94.99779 * 3 2 1 5 5 Si 1.86798 * 120.00208 * 274.99950 * 3 2 1 6 6 H 1.48500 * 109.46864 * 89.99761 * 5 3 2 7 7 H 1.48490 * 109.47159 * 209.99940 * 5 3 2 8 8 H 1.48499 * 109.46857 * 330.00244 * 5 3 2 9 9 C 1.50698 * 109.47227 * 119.99966 * 2 1 3 10 10 O 1.21275 * 120.00254 * 276.07668 * 9 2 1 11 11 N 1.34777 * 119.99979 * 96.07170 * 9 2 1 12 12 C 1.47428 * 125.64875 * 175.52837 * 11 9 2 13 13 C 1.54906 * 104.83087 * 204.16350 * 12 11 9 14 14 C 1.55164 * 101.58269 * 322.98817 * 13 12 11 15 15 C 1.53001 * 110.87162 * 277.06942 * 14 13 12 16 16 C 1.53004 * 110.71910 * 153.86596 * 14 13 12 17 17 N 1.46494 * 109.47058 * 66.48019 * 16 14 13 18 18 C 1.34775 * 120.00053 * 180.02562 * 17 16 14 19 19 O 1.21786 * 119.99911 * 359.97438 * 18 17 16 20 20 C 1.41520 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.35620 * 119.99882 * 188.07716 * 20 18 17 22 22 C 1.41673 * 119.99456 * 33.36368 * 21 20 18 23 23 C 1.38289 * 126.25664 * 185.19237 * 22 21 20 24 24 C 1.39781 * 107.07997 * 179.97438 * 23 22 21 25 25 C 1.35508 * 107.90828 * 0.02562 * 24 23 22 26 26 N 1.35752 * 108.91116 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.68680 * 180.02562 * 26 25 24 28 28 C 1.47020 * 125.64915 * 355.56558 * 11 9 2 29 29 H 1.08998 * 109.47173 * 61.98837 * 1 2 3 30 30 H 1.09004 * 109.46630 * 181.98806 * 1 2 3 31 31 H 1.08994 * 109.46930 * 301.98854 * 1 2 3 32 32 H 1.09002 * 109.47267 * 240.00082 * 2 1 3 33 33 H 0.96996 * 119.99825 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.36790 * 323.00290 * 12 11 9 35 35 H 1.09005 * 110.36594 * 85.21810 * 12 11 9 36 36 H 1.08998 * 111.00594 * 204.91648 * 13 12 11 37 37 H 1.09001 * 111.00436 * 81.06529 * 13 12 11 38 38 H 1.09003 * 109.46856 * 296.04976 * 15 14 13 39 39 H 1.08999 * 109.46902 * 56.05050 * 15 14 13 40 40 H 1.09002 * 109.46786 * 176.04858 * 15 14 13 41 41 H 1.09000 * 109.47154 * 306.47799 * 16 14 13 42 42 H 1.09001 * 109.46750 * 186.47926 * 16 14 13 43 43 H 0.97004 * 120.00195 * 359.97438 * 17 16 14 44 44 H 1.08000 * 120.00065 * 8.08654 * 20 18 17 45 45 H 1.07991 * 120.00371 * 213.35287 * 21 20 18 46 46 H 1.07999 * 126.45793 * 0.02562 * 23 22 21 47 47 H 1.08001 * 126.04526 * 180.02562 * 24 23 22 48 48 H 1.08001 * 125.53953 * 180.26068 * 25 24 23 49 49 H 1.08999 * 109.88013 * 59.49152 * 28 11 9 50 50 H 1.09003 * 109.88392 * 298.32448 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3366 1.9918 1.1038 5 14 2.2108 2.3485 -1.6115 6 1 0.9430 3.0591 -1.9165 7 1 3.3153 3.3342 -1.4956 8 1 2.5157 1.3894 -2.7035 9 6 2.0324 -0.7104 1.2304 10 8 2.1297 -0.1103 2.2798 11 7 2.3734 -2.0126 1.1647 12 6 2.9637 -2.8027 2.2606 13 6 3.7170 -3.9580 1.5554 14 6 2.7665 -4.2719 0.3699 15 6 1.6312 -5.1976 0.8118 16 6 3.5414 -4.8877 -0.7969 17 7 4.0479 -6.2054 -0.4054 18 6 4.7656 -6.9384 -1.2794 19 8 4.9928 -6.5055 -2.3948 20 6 5.2554 -8.2111 -0.9010 21 6 6.1116 -8.8775 -1.7146 22 6 7.0456 -8.1588 -2.5009 23 6 7.9045 -8.6939 -3.4434 24 6 8.6429 -7.6329 -3.9754 25 6 8.2348 -6.4940 -3.3650 26 7 7.2648 -6.7999 -2.4658 27 1 6.8024 -6.1666 -1.8949 28 6 2.2192 -2.8804 -0.0120 29 1 -0.3633 0.4826 -0.9073 30 1 -0.3633 -1.0271 0.0357 31 1 -0.3633 0.5444 0.8716 32 1 1.8934 -0.5138 -0.8900 33 1 2.6596 2.9064 1.1039 34 1 3.6590 -2.1921 2.8366 35 1 2.1806 -3.1976 2.9080 36 1 3.8164 -4.8198 2.2152 37 1 4.6921 -3.6275 1.1975 38 1 2.0444 -6.1588 1.1176 39 1 1.1005 -4.7468 1.6504 40 1 0.9401 -5.3465 -0.0179 41 1 4.3780 -4.2402 -1.0594 42 1 2.8800 -4.9934 -1.6568 43 1 3.8673 -6.5500 0.4832 44 1 4.9471 -8.6518 0.0356 45 1 6.0816 -9.9559 -1.7631 46 1 7.9884 -9.7352 -3.7174 47 1 9.4039 -7.7076 -4.7380 48 1 8.6163 -5.5035 -3.5644 49 1 2.7882 -2.4751 -0.8486 50 1 1.1655 -2.9574 -0.2803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722235278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = 47.308225 kcal Electronic energy + Delta-G solvation = -30709.769924 eV Core-core repulsion = 26626.630322 eV Total energy + Delta-G solvation = -4083.139602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.25425 -41.53521 -40.57483 -39.36224 -36.84865 -36.02172 -34.66916 -33.78662 -32.93805 -31.83463 -30.75735 -29.46738 -28.02833 -27.05960 -26.10652 -24.45071 -24.05572 -21.98985 -21.72607 -21.26014 -20.76800 -20.30198 -19.59032 -19.05913 -18.67836 -17.61634 -17.22853 -17.00344 -16.39683 -16.17354 -16.10314 -15.48735 -15.35140 -15.17914 -15.05529 -14.94985 -14.70731 -14.53841 -14.48264 -14.39735 -14.08467 -13.86093 -13.71920 -13.51327 -13.36988 -13.15926 -13.04439 -12.91025 -12.86408 -12.79140 -12.74639 -12.40209 -12.16621 -12.03964 -11.72440 -11.64054 -11.45943 -11.11108 -10.82182 -10.68546 -10.10301 -9.73921 -9.69195 -9.55431 -8.44953 -0.43932 0.83141 1.03288 1.44257 1.66055 1.66898 1.78598 1.82319 2.02067 2.03958 2.33900 2.45226 2.62167 3.26209 3.37786 3.46683 3.63518 3.89436 4.03399 4.08270 4.14150 4.15937 4.18472 4.18954 4.24794 4.34083 4.47216 4.52220 4.55794 4.62307 4.66974 4.68157 4.72473 4.75489 4.82093 4.82587 4.90166 4.97753 4.99347 5.05066 5.07305 5.10161 5.14304 5.24474 5.32642 5.38765 5.39875 5.41961 5.46066 6.02132 6.18328 6.51558 6.58936 6.68359 6.95349 7.27127 7.28542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.021 4.021 4 N -0.630 5.630 5 Si 0.982 3.018 6 H -0.239 1.239 7 H -0.266 1.266 8 H -0.216 1.216 9 C 0.524 3.476 10 O -0.549 6.549 11 N -0.624 5.624 12 C 0.103 3.897 13 C -0.115 4.115 14 C -0.071 4.071 15 C -0.138 4.138 16 C 0.140 3.860 17 N -0.711 5.711 18 C 0.541 3.459 19 O -0.591 6.591 20 C -0.301 4.301 21 C 0.050 3.950 22 C -0.020 4.020 23 C -0.157 4.157 24 C -0.235 4.235 25 C 0.011 3.989 26 N -0.515 5.515 27 H 0.417 0.583 28 C 0.103 3.897 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.137 0.863 33 H 0.336 0.664 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.414 0.586 44 H 0.164 0.836 45 H 0.173 0.827 46 H 0.157 0.843 47 H 0.149 0.851 48 H 0.185 0.815 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 -4.605 -2.264 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.268 4.268 4 N -0.243 5.243 5 Si 0.795 3.205 6 H -0.162 1.162 7 H -0.190 1.190 8 H -0.137 1.137 9 C 0.312 3.688 10 O -0.424 6.424 11 N -0.360 5.360 12 C -0.019 4.019 13 C -0.153 4.153 14 C -0.072 4.072 15 C -0.195 4.195 16 C 0.016 3.984 17 N -0.363 5.363 18 C 0.335 3.665 19 O -0.477 6.477 20 C -0.322 4.322 21 C 0.029 3.971 22 C -0.131 4.131 23 C -0.183 4.183 24 C -0.259 4.259 25 C -0.128 4.128 26 N -0.112 5.112 27 H 0.260 0.740 28 C -0.019 4.019 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.251 0.749 44 H 0.182 0.818 45 H 0.190 0.810 46 H 0.175 0.825 47 H 0.166 0.834 48 H 0.202 0.798 49 H 0.103 0.897 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.423 -3.590 -2.040 4.368 hybrid contribution -0.026 0.930 0.682 1.154 sum -1.450 -2.660 -1.358 3.320 Atomic orbital electron populations 1.21655 0.89746 1.04016 1.03688 1.20871 0.99451 0.92702 0.97430 1.30622 0.93648 0.99171 1.03396 1.68535 1.07716 1.15434 1.32566 0.85067 0.81352 0.79537 0.74527 1.16246 1.19014 1.13702 1.20626 0.77319 0.80191 0.90663 1.90761 1.53645 1.65520 1.32505 1.48646 1.63190 1.09136 1.15009 1.22218 0.96876 0.92491 0.90337 1.22902 0.97717 0.97957 0.96696 1.21701 0.96154 0.94461 0.94860 1.21848 0.96858 0.98807 1.02026 1.21216 0.97538 0.83494 0.96190 1.45860 1.54943 1.18359 1.17106 1.17489 0.79066 0.85302 0.84648 1.90862 1.61184 1.73289 1.22322 1.22007 1.08722 0.97691 1.03817 1.21239 0.87736 1.00889 0.87217 1.18721 1.04028 0.83780 1.06607 1.21892 0.98445 1.00316 0.97611 1.21171 1.06117 0.92553 1.06016 1.22576 0.94653 1.01112 0.94415 1.42741 1.29304 1.07819 1.31319 0.74004 1.22277 1.02782 0.88762 0.88110 0.88453 0.89963 0.93742 0.84536 0.84675 0.92782 0.91352 0.87728 0.90599 0.90957 0.92167 0.91403 0.91782 0.91310 0.74885 0.81816 0.80975 0.82548 0.83358 0.79841 0.89660 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.45 9.09 71.98 0.65 1.10 16 2 C -0.08 0.05 2.31 -12.28 -0.03 0.02 16 3 C -0.02 -0.04 4.83 88.68 0.43 0.39 16 4 N -0.63 -5.40 11.40 24.11 0.27 -5.12 16 5 Si 0.98 -3.39 29.33 68.60 2.01 -1.38 16 6 H -0.24 0.69 7.11 99.48 0.71 1.40 16 7 H -0.27 0.05 7.11 99.48 0.71 0.76 16 8 H -0.22 1.32 7.11 99.48 0.71 2.02 16 9 C 0.52 3.34 6.80 87.66 0.60 3.94 16 10 O -0.55 -9.25 15.10 -3.02 -0.05 -9.29 16 11 N -0.62 -0.16 3.33 -811.80 -2.70 -2.86 16 12 C 0.10 -0.06 6.58 86.85 0.57 0.51 16 13 C -0.11 0.84 5.72 31.99 0.18 1.02 16 14 C -0.07 0.63 0.61 -50.99 -0.03 0.60 16 15 C -0.14 1.38 8.23 71.98 0.59 1.97 16 16 C 0.14 -0.92 4.49 86.38 0.39 -0.53 16 17 N -0.71 4.65 5.11 -472.21 -2.41 2.24 16 18 C 0.54 -0.03 6.33 85.05 0.54 0.50 16 19 O -0.59 -4.58 12.71 -4.62 -0.06 -4.64 16 20 C -0.30 0.95 9.72 22.47 0.22 1.17 16 21 C 0.05 -0.05 9.75 22.51 0.22 0.17 16 22 C -0.02 -0.09 5.99 39.08 0.23 0.14 16 23 C -0.16 -0.71 10.86 22.66 0.25 -0.46 16 24 C -0.23 -1.11 10.81 22.01 0.24 -0.87 16 25 C 0.01 0.04 11.90 83.45 0.99 1.03 16 26 N -0.52 -2.49 4.55 -187.32 -0.85 -3.34 16 27 H 0.42 1.59 6.03 -92.71 -0.56 1.03 16 28 C 0.10 -0.73 5.35 86.73 0.46 -0.27 16 29 H 0.10 -0.80 7.99 -2.39 -0.02 -0.82 16 30 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.14 -1.08 6.57 -2.39 -0.02 -1.10 16 33 H 0.34 1.70 8.23 -92.71 -0.76 0.94 16 34 H 0.05 0.24 8.08 -2.39 -0.02 0.22 16 35 H 0.07 -0.05 7.75 -2.38 -0.02 -0.07 16 36 H 0.10 -1.12 8.04 -2.39 -0.02 -1.14 16 37 H 0.08 -0.44 8.02 -2.39 -0.02 -0.46 16 38 H 0.07 -0.86 6.76 -2.39 -0.02 -0.87 16 39 H 0.06 -0.48 7.49 -2.39 -0.02 -0.50 16 40 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.06 -0.30 8.10 -2.39 -0.02 -0.31 16 42 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.41 -4.66 6.99 -92.71 -0.65 -5.31 16 44 H 0.16 -1.56 8.06 -2.91 -0.02 -1.59 16 45 H 0.17 -1.23 8.06 -2.92 -0.02 -1.26 16 46 H 0.16 0.00 8.06 -2.91 -0.02 -0.02 16 47 H 0.15 0.22 8.06 -2.91 -0.02 0.19 16 48 H 0.18 -0.32 8.06 -2.91 -0.02 -0.35 16 49 H 0.09 -0.78 7.32 -2.39 -0.02 -0.79 16 50 H 0.09 -0.90 7.84 -2.39 -0.02 -0.92 16 Total: 0.00 -26.85 400.27 2.48 -24.37 By element: Atomic # 1 Polarization: -10.16 SS G_CDS: -0.24 Total: -10.40 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.50 Total: 10.43 kcal Atomic # 7 Polarization: -3.40 SS G_CDS: -5.69 Total: -9.09 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.10 Total: -13.93 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.01 Total: -1.38 kcal Total: -26.85 2.48 -24.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722235278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.682 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds