Wall clock time and date at job start Wed Apr 1 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.09000 * 109.47622 * 54.99415 * 3 2 1 5 5 N 1.46511 * 109.46674 * 294.99835 * 3 2 1 6 6 C 1.34774 * 119.99854 * 84.99937 * 5 3 2 7 7 C 1.50696 * 119.99489 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00227 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.47551 * 174.99935 * 3 2 1 10 10 O 1.21281 * 119.99957 * 119.99341 * 9 3 2 11 11 N 1.34776 * 119.99399 * 299.99857 * 9 3 2 12 12 C 1.46498 * 119.99568 * 179.97438 * 11 9 3 13 13 H 1.08996 * 110.73132 * 31.59651 * 12 11 9 14 14 C 1.54349 * 110.99528 * 268.06961 * 12 11 9 15 15 C 1.51377 * 105.16920 * 268.04544 * 14 12 11 16 16 C 1.38488 * 130.39043 * 162.83365 * 15 14 12 17 17 C 1.38106 * 120.21347 * 179.97438 * 16 15 14 18 18 C 1.38254 * 119.93740 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.92991 * 0.02562 * 18 17 16 20 20 C 1.38214 * 109.75557 * 342.81156 * 15 14 12 21 21 C 1.51370 * 109.76507 * 359.97438 * 20 15 14 22 22 H 1.08999 * 110.30428 * 136.21056 * 21 20 15 23 23 N 1.46498 * 110.30532 * 258.26890 * 21 20 15 24 24 C 1.36939 * 119.99974 * 273.54780 * 23 21 20 25 25 H 1.08005 * 119.99739 * 359.97438 * 24 23 21 26 26 C 1.38810 * 120.00139 * 180.02562 * 24 23 21 27 27 N 1.31617 * 120.00270 * 359.97438 * 26 24 23 28 28 Si 1.86808 * 119.99938 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47062 * 89.99624 * 28 26 24 30 30 H 1.48494 * 109.46933 * 209.99319 * 28 26 24 31 31 H 1.48496 * 109.47057 * 329.99870 * 28 26 24 32 32 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47575 * 300.00540 * 1 2 3 34 34 H 1.08999 * 109.47135 * 60.00633 * 1 2 3 35 35 H 1.08997 * 109.47602 * 239.99937 * 2 1 3 36 36 H 1.08999 * 109.47135 * 119.99367 * 2 1 3 37 37 H 0.96999 * 119.99168 * 264.99588 * 5 3 2 38 38 H 1.09002 * 109.47666 * 60.00275 * 7 6 5 39 39 H 1.08998 * 109.47349 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47480 * 300.00253 * 7 6 5 41 41 H 0.96996 * 120.00598 * 359.97438 * 11 9 3 42 42 H 1.08999 * 110.30056 * 26.96481 * 14 12 11 43 43 H 1.09002 * 110.30286 * 149.02517 * 14 12 11 44 44 H 1.08002 * 119.89256 * 359.97409 * 16 15 14 45 45 H 1.08009 * 120.03150 * 180.02562 * 17 16 15 46 46 H 1.07998 * 120.03173 * 180.27492 * 18 17 16 47 47 H 1.07999 * 119.88781 * 179.97438 * 19 18 17 48 48 H 0.96994 * 120.00361 * 93.53843 * 23 21 20 49 49 H 0.97002 * 120.00609 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6642 -1.3671 7 6 0.0367 3.3384 -2.6547 8 8 -0.3393 2.6326 -0.4343 9 6 3.5419 1.4444 0.1238 10 8 4.2216 1.9436 -0.7478 11 7 4.1296 0.8913 1.2032 12 6 5.5897 0.8926 1.3234 13 1 6.0153 1.7750 0.8457 14 6 6.1945 -0.3977 0.7305 15 6 6.2888 -1.3619 1.8937 16 6 6.4507 -2.7372 1.9085 17 6 6.5113 -3.4169 3.1092 18 6 6.4096 -2.7232 4.3007 19 6 6.2470 -1.3518 4.2879 20 6 6.1875 -0.6682 3.0849 21 6 6.0190 0.8096 2.8038 22 1 5.2465 1.2312 3.4469 23 7 7.2877 1.5136 3.0062 24 6 7.6301 1.9627 4.2537 25 1 6.9646 1.7983 5.0883 26 6 8.8320 2.6302 4.4454 27 7 9.6429 2.8309 3.4283 28 14 9.2987 3.2435 6.1471 29 1 10.0572 2.1866 6.8634 30 1 10.1425 4.4589 6.0210 31 1 8.0677 3.5723 6.9096 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 2.2720 2.1230 -1.9978 38 1 0.0680 2.6143 -3.4688 39 1 -0.9741 3.7350 -2.5595 40 1 0.7281 4.1539 -2.8670 41 1 3.5860 0.4923 1.9005 42 1 5.5410 -0.8011 -0.0430 43 1 7.1851 -0.1980 0.3217 44 1 6.5298 -3.2799 0.9781 45 1 6.6381 -4.4895 3.1173 46 1 6.4612 -3.2527 5.2406 47 1 6.1672 -0.8106 5.2191 48 1 7.8853 1.6614 2.2567 49 1 10.4830 3.2970 3.5623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725032821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:38 Heat of formation + Delta-G solvation = -37.406436 kcal Electronic energy + Delta-G solvation = -30587.816033 eV Core-core repulsion = 26514.658667 eV Total energy + Delta-G solvation = -4073.157366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76025 -39.93139 -38.88084 -36.30082 -35.46161 -34.15312 -33.05130 -32.33257 -31.19593 -29.96770 -29.80013 -28.35126 -26.78414 -26.05017 -23.35676 -22.48345 -22.06704 -20.97774 -20.59342 -20.18407 -20.05204 -17.95307 -17.48301 -16.86630 -16.29467 -15.97859 -15.92772 -15.47686 -15.06715 -14.70068 -14.59718 -14.43832 -14.22991 -14.04715 -13.61065 -13.46516 -13.14191 -12.99973 -12.94292 -12.81414 -12.71300 -12.67743 -12.32922 -12.13340 -11.73192 -11.63688 -11.42080 -11.14052 -11.11401 -11.04686 -10.86649 -10.66175 -10.43223 -10.17750 -10.08741 -9.98748 -9.83850 -9.27077 -9.12091 -8.98564 -8.37603 -8.14182 -7.13721 -5.87932 -3.18518 1.78333 1.83817 2.39113 2.52953 2.72990 3.31487 3.37823 3.43376 3.44693 4.17797 4.41749 4.51893 4.58609 4.69541 4.74553 4.82234 4.99062 5.01211 5.11118 5.14379 5.29842 5.32198 5.38603 5.45036 5.46620 5.54825 5.56869 5.57635 5.68518 5.74615 5.85838 5.86154 5.94150 6.04328 6.10064 6.15336 6.19150 6.21161 6.30467 6.44014 6.55554 6.68649 6.84919 6.93072 7.17979 7.29387 7.43065 7.47121 7.59448 8.00372 8.13357 8.27989 9.40257 9.90765 10.26287 11.33731 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.003109 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.208848 B = 9004.698246 C =10663.396357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.126 3.874 4 H 0.115 0.885 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.174 4.174 8 O -0.543 6.543 9 C 0.512 3.488 10 O -0.536 6.536 11 N -0.705 5.705 12 C 0.135 3.865 13 H 0.111 0.889 14 C -0.085 4.085 15 C -0.097 4.097 16 C -0.114 4.114 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.090 4.090 20 C -0.093 4.093 21 C 0.207 3.793 22 H 0.063 0.937 23 N -0.703 5.703 24 C -0.245 4.245 25 H 0.072 0.928 26 C -0.006 4.006 27 N -0.927 5.927 28 Si 0.908 3.092 29 H -0.289 1.289 30 H -0.290 1.290 31 H -0.280 1.280 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.410 0.590 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.402 0.598 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.388 0.612 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.624 -8.262 -9.794 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.017 3.983 4 H 0.133 0.867 5 N -0.366 5.366 6 C 0.300 3.700 7 C -0.233 4.233 8 O -0.420 6.420 9 C 0.297 3.703 10 O -0.413 6.413 11 N -0.355 5.355 12 C 0.030 3.970 13 H 0.129 0.871 14 C -0.123 4.123 15 C -0.098 4.098 16 C -0.132 4.132 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.109 4.109 20 C -0.097 4.097 21 C 0.096 3.904 22 H 0.080 0.920 23 N -0.342 5.342 24 C -0.376 4.376 25 H 0.090 0.910 26 C -0.203 4.203 27 N -0.573 5.573 28 Si 0.739 3.261 29 H -0.216 1.216 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.222 0.778 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.626 -7.778 -9.580 20.705 hybrid contribution 0.937 -0.016 0.779 1.219 sum -15.690 -7.793 -8.801 19.605 Atomic orbital electron populations 1.21797 0.94015 1.00962 1.03241 1.21915 0.97729 0.93940 1.03206 1.20878 0.91703 0.95674 0.90013 0.86744 1.45795 1.17099 1.57636 1.16076 1.20758 0.81075 0.77799 0.90341 1.21910 1.04334 1.01899 0.95189 1.90735 1.51260 1.58983 1.41051 1.20494 0.89729 0.77831 0.82246 1.90708 1.65116 1.45350 1.40098 1.45816 1.07884 1.59216 1.22630 1.21934 0.78582 0.98818 0.97679 0.87119 1.21395 1.01721 0.93503 0.95705 1.20499 1.00284 0.93315 0.95715 1.20470 1.02077 0.93103 0.97583 1.20854 1.02501 0.99112 0.92536 1.20976 1.01539 0.94360 0.97656 1.20621 0.99216 0.93455 0.97580 1.21733 0.97157 0.98106 0.92714 1.19840 0.91270 0.87440 0.91889 0.91953 1.42262 1.17928 1.64559 1.09488 1.19175 1.02072 1.29762 0.86580 0.90960 1.24766 0.97012 1.01013 0.97496 1.69658 1.11839 1.46439 1.29400 0.86182 0.78181 0.78135 0.83622 1.21583 1.21647 1.20590 0.93117 0.91838 0.92434 0.91169 0.90372 0.75268 0.89398 0.88905 0.89189 0.76365 0.91096 0.89342 0.87199 0.86808 0.86706 0.86551 0.77752 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.51 37.16 0.32 -1.03 16 2 C -0.13 -1.15 5.55 -26.73 -0.15 -1.30 16 3 C 0.13 1.33 2.67 -69.08 -0.18 1.15 16 4 H 0.11 1.29 7.58 -51.93 -0.39 0.89 16 5 N -0.71 -6.99 4.90 -54.93 -0.27 -7.26 16 6 C 0.51 5.16 6.51 -10.99 -0.07 5.09 16 7 C -0.17 -1.08 10.32 36.00 0.37 -0.70 16 8 O -0.54 -7.26 14.23 5.56 0.08 -7.18 16 9 C 0.51 6.64 7.22 -10.99 -0.08 6.56 16 10 O -0.54 -8.60 15.48 5.56 0.09 -8.52 16 11 N -0.70 -9.00 4.98 -52.43 -0.26 -9.26 16 12 C 0.14 2.16 3.02 -66.51 -0.20 1.96 16 13 H 0.11 2.05 7.45 -51.93 -0.39 1.66 16 14 C -0.09 -1.29 6.49 -26.84 -0.17 -1.46 16 15 C -0.10 -1.56 6.14 -104.21 -0.64 -2.20 16 16 C -0.11 -1.66 10.04 -39.54 -0.40 -2.06 16 17 C -0.13 -1.84 10.05 -39.62 -0.40 -2.24 16 18 C -0.13 -1.89 10.05 -39.62 -0.40 -2.29 16 19 C -0.09 -1.53 10.04 -39.53 -0.40 -1.93 16 20 C -0.09 -1.65 5.76 -104.21 -0.60 -2.25 16 21 C 0.21 3.86 3.12 -68.04 -0.21 3.64 16 22 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 23 N -0.70 -16.72 5.15 -53.53 -0.28 -17.00 16 24 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 25 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 26 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 27 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 28 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 34 H 0.06 0.59 5.65 -51.93 -0.29 0.30 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.62 7.43 -51.93 -0.39 0.24 16 37 H 0.41 3.72 7.79 -40.82 -0.32 3.40 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.57 8.12 -51.93 -0.42 0.14 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.40 4.30 8.02 -40.82 -0.33 3.97 16 42 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 48 H 0.39 9.94 7.78 -40.82 -0.32 9.62 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -32.61 402.50 -9.77 -42.39 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -7.44 Total: 16.40 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -3.46 Total: -5.95 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.08 Total: -60.03 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.17 Total: -15.70 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.61 -9.77 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725032821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.982 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds