Wall clock time and date at job start Wed Apr 1 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.09000 * 109.47622 * 54.99415 * 3 2 1 5 5 N 1.46511 * 109.46674 * 294.99835 * 3 2 1 6 6 C 1.34774 * 119.99854 * 84.99937 * 5 3 2 7 7 C 1.50696 * 119.99489 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00227 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.47551 * 174.99935 * 3 2 1 10 10 O 1.21281 * 119.99957 * 119.99341 * 9 3 2 11 11 N 1.34776 * 119.99399 * 299.99857 * 9 3 2 12 12 C 1.46498 * 119.99568 * 179.97438 * 11 9 3 13 13 H 1.08996 * 110.73132 * 31.59651 * 12 11 9 14 14 C 1.54349 * 110.99528 * 268.06961 * 12 11 9 15 15 C 1.51377 * 105.16920 * 268.04544 * 14 12 11 16 16 C 1.38488 * 130.39043 * 162.83365 * 15 14 12 17 17 C 1.38106 * 120.21347 * 179.97438 * 16 15 14 18 18 C 1.38254 * 119.93740 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.92991 * 0.02562 * 18 17 16 20 20 C 1.38214 * 109.75557 * 342.81156 * 15 14 12 21 21 C 1.51370 * 109.76507 * 359.97438 * 20 15 14 22 22 H 1.08999 * 110.30428 * 136.21056 * 21 20 15 23 23 N 1.46498 * 110.30532 * 258.26890 * 21 20 15 24 24 C 1.36939 * 119.99974 * 273.54780 * 23 21 20 25 25 H 1.08005 * 119.99739 * 359.97438 * 24 23 21 26 26 C 1.38810 * 120.00139 * 180.02562 * 24 23 21 27 27 N 1.31617 * 120.00270 * 359.97438 * 26 24 23 28 28 Si 1.86808 * 119.99938 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47062 * 89.99624 * 28 26 24 30 30 H 1.48494 * 109.46933 * 209.99319 * 28 26 24 31 31 H 1.48496 * 109.47057 * 329.99870 * 28 26 24 32 32 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47575 * 300.00540 * 1 2 3 34 34 H 1.08999 * 109.47135 * 60.00633 * 1 2 3 35 35 H 1.08997 * 109.47602 * 239.99937 * 2 1 3 36 36 H 1.08999 * 109.47135 * 119.99367 * 2 1 3 37 37 H 0.96999 * 119.99168 * 264.99588 * 5 3 2 38 38 H 1.09002 * 109.47666 * 60.00275 * 7 6 5 39 39 H 1.08998 * 109.47349 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47480 * 300.00253 * 7 6 5 41 41 H 0.96996 * 120.00598 * 359.97438 * 11 9 3 42 42 H 1.08999 * 110.30056 * 26.96481 * 14 12 11 43 43 H 1.09002 * 110.30286 * 149.02517 * 14 12 11 44 44 H 1.08002 * 119.89256 * 359.97409 * 16 15 14 45 45 H 1.08009 * 120.03150 * 180.02562 * 17 16 15 46 46 H 1.07998 * 120.03173 * 180.27492 * 18 17 16 47 47 H 1.07999 * 119.88781 * 179.97438 * 19 18 17 48 48 H 0.96994 * 120.00361 * 93.53843 * 23 21 20 49 49 H 0.97002 * 120.00609 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6642 -1.3671 7 6 0.0367 3.3384 -2.6547 8 8 -0.3393 2.6326 -0.4343 9 6 3.5419 1.4444 0.1238 10 8 4.2216 1.9436 -0.7478 11 7 4.1296 0.8913 1.2032 12 6 5.5897 0.8926 1.3234 13 1 6.0153 1.7750 0.8457 14 6 6.1945 -0.3977 0.7305 15 6 6.2888 -1.3619 1.8937 16 6 6.4507 -2.7372 1.9085 17 6 6.5113 -3.4169 3.1092 18 6 6.4096 -2.7232 4.3007 19 6 6.2470 -1.3518 4.2879 20 6 6.1875 -0.6682 3.0849 21 6 6.0190 0.8096 2.8038 22 1 5.2465 1.2312 3.4469 23 7 7.2877 1.5136 3.0062 24 6 7.6301 1.9627 4.2537 25 1 6.9646 1.7983 5.0883 26 6 8.8320 2.6302 4.4454 27 7 9.6429 2.8309 3.4283 28 14 9.2987 3.2435 6.1471 29 1 10.0572 2.1866 6.8634 30 1 10.1425 4.4589 6.0210 31 1 8.0677 3.5723 6.9096 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 2.2720 2.1230 -1.9978 38 1 0.0680 2.6143 -3.4688 39 1 -0.9741 3.7350 -2.5595 40 1 0.7281 4.1539 -2.8670 41 1 3.5860 0.4923 1.9005 42 1 5.5410 -0.8011 -0.0430 43 1 7.1851 -0.1980 0.3217 44 1 6.5298 -3.2799 0.9781 45 1 6.6381 -4.4895 3.1173 46 1 6.4612 -3.2527 5.2406 47 1 6.1672 -0.8106 5.2191 48 1 7.8853 1.6614 2.2567 49 1 10.4830 3.2970 3.5623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725032821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:37 Heat of formation + Delta-G solvation = -59.414845 kcal Electronic energy + Delta-G solvation = -30588.770389 eV Core-core repulsion = 26514.658667 eV Total energy + Delta-G solvation = -4074.111722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84517 -41.02559 -39.94389 -37.58630 -36.39403 -35.79846 -34.22792 -33.34608 -32.75833 -31.32580 -30.61787 -29.48007 -27.81867 -27.54724 -25.16440 -23.55854 -23.05544 -22.05290 -21.54978 -21.50641 -21.18807 -19.41798 -18.79893 -17.92571 -17.45594 -17.08240 -16.83446 -16.68201 -16.44197 -16.18277 -15.74339 -15.61412 -15.27492 -15.18064 -14.99196 -14.83196 -14.40042 -14.23243 -14.17121 -13.93638 -13.56964 -13.32161 -13.12819 -13.09909 -12.96338 -12.87596 -12.80097 -12.60495 -12.48316 -12.30658 -12.24100 -12.02042 -11.87806 -11.84987 -11.64900 -11.06381 -10.98913 -10.91540 -10.26032 -10.11591 -9.61315 -9.40475 -9.08121 -7.97515 -5.27568 0.56568 0.60818 1.42074 1.45843 1.46863 1.54938 1.61044 1.79535 2.39603 2.54939 2.95831 3.35291 3.37034 3.49564 3.73227 3.84111 3.95455 4.02900 4.06685 4.11920 4.18766 4.27975 4.32303 4.36523 4.48822 4.50715 4.58490 4.67679 4.68504 4.76186 4.82633 4.83792 4.90212 4.97710 5.01061 5.06920 5.13927 5.21975 5.31046 5.35556 5.40572 5.44212 5.48896 5.66485 5.72395 5.90436 6.20805 6.25316 6.39407 6.52913 7.05663 7.23283 7.29404 7.98143 8.23055 9.25337 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.003109 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.208848 B = 9004.698246 C =10663.396357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.133 3.867 4 H 0.108 0.892 5 N -0.710 5.710 6 C 0.508 3.492 7 C -0.167 4.167 8 O -0.580 6.580 9 C 0.516 3.484 10 O -0.567 6.567 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.081 0.919 14 C -0.076 4.076 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.116 4.116 21 C 0.206 3.794 22 H 0.058 0.942 23 N -0.718 5.718 24 C -0.236 4.236 25 H 0.078 0.922 26 C -0.070 4.070 27 N -0.966 5.966 28 Si 0.969 3.031 29 H -0.288 1.288 30 H -0.297 1.297 31 H -0.268 1.268 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.415 0.585 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.414 0.586 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.137 0.863 45 H 0.149 0.851 46 H 0.140 0.860 47 H 0.107 0.893 48 H 0.375 0.625 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 -10.648 -10.120 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.024 3.976 4 H 0.125 0.875 5 N -0.364 5.364 6 C 0.297 3.703 7 C -0.226 4.226 8 O -0.460 6.460 9 C 0.302 3.698 10 O -0.446 6.446 11 N -0.346 5.346 12 C 0.042 3.958 13 H 0.099 0.901 14 C -0.115 4.115 15 C -0.103 4.103 16 C -0.134 4.134 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.130 4.130 20 C -0.119 4.119 21 C 0.096 3.904 22 H 0.076 0.924 23 N -0.357 5.357 24 C -0.368 4.368 25 H 0.095 0.905 26 C -0.262 4.262 27 N -0.616 5.616 28 Si 0.798 3.202 29 H -0.215 1.215 30 H -0.224 1.224 31 H -0.193 1.193 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.253 0.747 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.155 0.845 45 H 0.167 0.833 46 H 0.158 0.842 47 H 0.125 0.875 48 H 0.207 0.793 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.018 -10.208 -9.895 22.952 hybrid contribution 1.249 0.631 0.862 1.643 sum -16.769 -9.577 -9.034 21.320 Atomic orbital electron populations 1.21720 0.94137 1.01486 1.02073 1.21892 0.97390 0.92614 1.04181 1.20816 0.89410 0.96999 0.90377 0.87457 1.45855 1.17282 1.57462 1.15818 1.21464 0.80469 0.77155 0.91163 1.21933 1.04568 1.02495 0.93626 1.90720 1.52228 1.60446 1.42645 1.20897 0.90631 0.76783 0.81496 1.90698 1.66050 1.46590 1.41219 1.45645 1.06584 1.59259 1.23136 1.21505 0.80326 0.98351 0.95633 0.90059 1.21294 1.01385 0.92794 0.95991 1.20610 1.00453 0.94249 0.94945 1.20840 1.00885 0.92411 0.99230 1.21298 1.00272 1.00873 0.91693 1.21287 1.00515 0.93405 0.99437 1.20762 1.00414 0.94840 0.97000 1.21497 0.99414 0.97045 0.93908 1.19951 0.88943 0.88044 0.93449 0.92374 1.42372 1.19319 1.65782 1.08187 1.19519 1.01624 1.28013 0.87626 0.90459 1.25517 0.97540 1.02418 1.00748 1.69811 1.12207 1.48345 1.31271 0.85205 0.77966 0.77102 0.79892 1.21510 1.22383 1.19259 0.91645 0.93222 0.93423 0.90436 0.89104 0.74687 0.87026 0.88760 0.87906 0.74938 0.89134 0.90548 0.84491 0.83299 0.84247 0.87511 0.79300 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.51 71.98 0.61 -1.78 16 2 C -0.12 -1.97 5.55 30.59 0.17 -1.80 16 3 C 0.13 2.71 2.67 44.24 0.12 2.83 16 4 H 0.11 2.40 7.58 -2.39 -0.02 2.38 16 5 N -0.71 -13.36 4.90 -446.08 -2.19 -15.55 16 6 C 0.51 9.81 6.51 87.66 0.57 10.38 16 7 C -0.17 -1.78 10.32 71.23 0.74 -1.05 16 8 O -0.58 -15.43 14.23 -3.03 -0.04 -15.47 16 9 C 0.52 13.18 7.22 87.66 0.63 13.81 16 10 O -0.57 -18.24 15.48 -3.03 -0.05 -18.29 16 11 N -0.69 -17.51 4.98 -438.18 -2.18 -19.70 16 12 C 0.15 4.82 3.02 45.91 0.14 4.96 16 13 H 0.08 3.17 7.45 -2.39 -0.02 3.15 16 14 C -0.08 -2.27 6.49 30.52 0.20 -2.08 16 15 C -0.10 -3.12 6.14 -19.60 -0.12 -3.24 16 16 C -0.12 -2.99 10.04 22.30 0.22 -2.77 16 17 C -0.12 -2.96 10.05 22.24 0.22 -2.74 16 18 C -0.13 -3.48 10.05 22.24 0.22 -3.25 16 19 C -0.11 -3.71 10.04 22.30 0.22 -3.48 16 20 C -0.12 -4.03 5.76 -19.60 -0.11 -4.15 16 21 C 0.21 7.83 3.12 44.92 0.14 7.97 16 22 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 23 N -0.72 -35.33 5.15 -323.27 -1.67 -36.99 16 24 C -0.24 -12.76 9.96 84.03 0.84 -11.93 16 25 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 26 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 27 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 28 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 29 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 30 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 31 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.00 7.85 -2.39 -0.02 0.99 16 34 H 0.05 0.93 5.65 -2.39 -0.01 0.92 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.24 7.43 -2.39 -0.02 1.22 16 37 H 0.42 7.11 7.79 -92.71 -0.72 6.38 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 39 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.41 8.52 8.02 -92.71 -0.74 7.77 16 42 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 46 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 47 H 0.11 3.65 8.06 -2.91 -0.02 3.62 16 48 H 0.37 20.12 7.78 -92.71 -0.72 19.40 16 49 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -72.43 402.50 0.27 -72.16 By element: Atomic # 1 Polarization: 47.48 SS G_CDS: -1.19 Total: 46.29 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.28 Total: -1.77 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -5.75 Total: -130.69 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.09 Total: -33.77 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.43 0.27 -72.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725032821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.746 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds