Wall clock time and date at job start Wed Apr 1 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47154 * 2 1 4 4 H 1.09002 * 109.47055 * 305.00063 * 3 2 1 5 5 N 1.46511 * 109.46997 * 64.99645 * 3 2 1 6 6 C 1.34770 * 119.99917 * 275.00035 * 5 3 2 7 7 C 1.50706 * 119.99797 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00325 * 359.97438 * 6 5 3 9 9 C 1.50700 * 109.47162 * 184.99505 * 3 2 1 10 10 O 1.21281 * 119.99957 * 239.99844 * 9 3 2 11 11 N 1.34776 * 119.99399 * 60.00359 * 9 3 2 12 12 C 1.46498 * 119.99568 * 179.97438 * 11 9 3 13 13 H 1.08996 * 110.73132 * 31.59651 * 12 11 9 14 14 C 1.54349 * 110.99528 * 268.06961 * 12 11 9 15 15 C 1.51377 * 105.16920 * 268.04544 * 14 12 11 16 16 C 1.38488 * 130.39043 * 162.83365 * 15 14 12 17 17 C 1.38106 * 120.21347 * 179.97438 * 16 15 14 18 18 C 1.38254 * 119.93740 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.92991 * 0.02562 * 18 17 16 20 20 C 1.38214 * 109.75557 * 342.81156 * 15 14 12 21 21 C 1.51370 * 109.76507 * 359.97438 * 20 15 14 22 22 H 1.08999 * 110.30428 * 136.21056 * 21 20 15 23 23 N 1.46498 * 110.30532 * 258.26890 * 21 20 15 24 24 C 1.36939 * 119.99974 * 273.54780 * 23 21 20 25 25 H 1.08005 * 119.99739 * 359.97438 * 24 23 21 26 26 C 1.38810 * 120.00139 * 180.02562 * 24 23 21 27 27 N 1.31617 * 119.99991 * 179.97438 * 26 24 23 28 28 Si 1.86801 * 119.99916 * 359.97438 * 26 24 23 29 29 H 1.48500 * 109.47030 * 90.00703 * 28 26 24 30 30 H 1.48501 * 109.47057 * 210.00434 * 28 26 24 31 31 H 1.48496 * 109.47209 * 330.00435 * 28 26 24 32 32 H 1.08998 * 109.46612 * 60.00034 * 1 2 3 33 33 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46987 * 299.99866 * 1 2 3 35 35 H 1.08998 * 109.46987 * 240.00134 * 2 1 3 36 36 H 1.08998 * 109.46612 * 119.99966 * 2 1 3 37 37 H 0.97001 * 119.99381 * 95.00432 * 5 3 2 38 38 H 1.09002 * 109.47300 * 59.99484 * 7 6 5 39 39 H 1.08996 * 109.47103 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46764 * 300.00153 * 7 6 5 41 41 H 0.96996 * 120.00598 * 359.97438 * 11 9 3 42 42 H 1.08999 * 110.30056 * 26.96481 * 14 12 11 43 43 H 1.09002 * 110.30286 * 149.02517 * 14 12 11 44 44 H 1.08002 * 119.89256 * 359.97409 * 16 15 14 45 45 H 1.08009 * 120.03150 * 180.02562 * 17 16 15 46 46 H 1.07998 * 120.03173 * 180.27492 * 18 17 16 47 47 H 1.07999 * 119.88781 * 179.97438 * 19 18 17 48 48 H 0.96994 * 120.00361 * 93.53843 * 23 21 20 49 49 H 0.97004 * 120.00227 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4351 2.6644 1.3669 7 6 0.0366 3.3386 2.6545 8 8 -0.3392 2.6327 0.4341 9 6 3.5420 1.4443 -0.1237 10 8 4.2216 1.9436 0.7479 11 7 4.1298 0.8911 -1.2030 12 6 5.5898 0.8933 -1.3236 13 1 6.0582 0.8361 -0.3411 14 6 6.0793 2.1386 -2.0930 15 6 6.1493 1.7067 -3.5422 16 6 6.2144 2.4615 -4.7014 17 6 6.2724 1.8398 -5.9332 18 6 6.2651 0.4594 -6.0104 19 6 6.1992 -0.2950 -4.8555 20 6 6.1425 0.3267 -3.6192 21 6 6.0681 -0.2633 -2.2272 22 1 5.3521 -1.0848 -2.2024 23 7 7.3900 -0.7291 -1.8010 24 6 7.8103 -1.9903 -2.1296 25 1 7.1670 -2.6417 -2.7025 26 6 9.0627 -2.4319 -1.7254 27 7 9.4664 -3.6442 -2.0407 28 14 10.1751 -1.3054 -0.7338 29 1 9.9131 -1.5009 0.7147 30 1 11.5946 -1.6274 -1.0280 31 1 9.9019 0.1076 -1.1000 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.2719 2.1232 1.9978 38 1 0.7281 4.1541 2.8667 39 1 -0.9745 3.7345 2.5595 40 1 0.0680 2.6145 3.4686 41 1 3.5862 0.4915 -1.9000 42 1 5.3700 2.9581 -1.9765 43 1 7.0652 2.4391 -1.7383 44 1 6.2197 3.5399 -4.6420 45 1 6.3234 2.4314 -6.8355 46 1 6.3149 -0.0284 -6.9727 47 1 6.1931 -1.3732 -4.9166 48 1 7.9677 -0.1442 -1.2863 49 1 10.3417 -3.9527 -1.7586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725032828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:42 Heat of formation + Delta-G solvation = -33.363047 kcal Electronic energy + Delta-G solvation = -30646.249442 eV Core-core repulsion = 26573.267410 eV Total energy + Delta-G solvation = -4072.982032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83568 -40.01665 -38.95404 -36.41305 -35.50899 -34.28000 -33.09525 -32.37077 -31.35129 -30.17606 -30.00116 -28.44150 -26.84462 -26.33729 -23.06812 -22.46319 -22.10110 -21.04043 -20.59654 -20.35114 -20.11419 -18.19852 -17.67435 -16.97636 -16.41307 -16.03044 -15.95702 -15.63409 -15.15870 -14.70565 -14.58459 -14.42332 -14.31192 -14.03383 -13.90202 -13.61725 -13.22030 -13.05893 -12.87001 -12.85370 -12.72372 -12.65637 -12.36073 -12.16728 -11.84145 -11.76327 -11.61563 -11.34010 -11.20906 -11.10875 -10.93401 -10.76516 -10.48857 -10.24478 -10.13148 -10.01778 -9.70794 -9.32421 -9.19511 -9.04240 -8.43091 -8.22802 -7.45014 -5.88674 -3.26352 1.71497 1.78117 2.34314 2.44428 2.66531 3.24951 3.32023 3.34714 3.40174 4.11961 4.36992 4.49555 4.55143 4.57963 4.69317 4.80416 4.88291 4.96242 5.06849 5.12556 5.21042 5.30205 5.32112 5.35920 5.36095 5.41943 5.52944 5.55880 5.57934 5.65073 5.76910 5.83409 5.86863 5.92993 5.97615 6.09025 6.11530 6.19520 6.20329 6.36620 6.47109 6.57048 6.78811 6.88563 7.10288 7.24818 7.35965 7.39149 7.82919 7.95501 8.04459 8.28582 9.04165 9.76786 9.93665 11.28610 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.003203 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.011037 B = 8740.632891 C =10028.146467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.127 3.873 4 H 0.114 0.886 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.174 4.174 8 O -0.543 6.543 9 C 0.513 3.487 10 O -0.537 6.537 11 N -0.704 5.704 12 C 0.133 3.867 13 H 0.109 0.891 14 C -0.087 4.087 15 C -0.100 4.100 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.084 4.084 20 C -0.096 4.096 21 C 0.213 3.787 22 H 0.072 0.928 23 N -0.728 5.728 24 C -0.248 4.248 25 H 0.093 0.907 26 C 0.013 3.987 27 N -0.927 5.927 28 Si 0.880 3.120 29 H -0.282 1.282 30 H -0.289 1.289 31 H -0.276 1.276 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.365 0.635 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.817 12.830 2.860 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.132 0.868 5 N -0.366 5.366 6 C 0.300 3.700 7 C -0.233 4.233 8 O -0.420 6.420 9 C 0.298 3.702 10 O -0.414 6.414 11 N -0.355 5.355 12 C 0.028 3.972 13 H 0.127 0.873 14 C -0.126 4.126 15 C -0.101 4.101 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.103 4.103 20 C -0.100 4.100 21 C 0.102 3.898 22 H 0.090 0.910 23 N -0.369 5.369 24 C -0.378 4.378 25 H 0.111 0.889 26 C -0.184 4.184 27 N -0.573 5.573 28 Si 0.710 3.290 29 H -0.208 1.208 30 H -0.216 1.216 31 H -0.202 1.202 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.238 0.762 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.198 0.802 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.816 12.882 2.783 21.365 hybrid contribution 1.299 0.567 0.458 1.489 sum -15.517 13.450 3.240 20.789 Atomic orbital electron populations 1.21794 0.93982 1.01099 1.03105 1.21940 0.97757 0.93793 1.03528 1.20872 0.91488 0.95852 0.89941 0.86802 1.45805 1.17140 1.57598 1.16101 1.20759 0.81046 0.77822 0.90335 1.21914 1.04285 1.01898 0.95245 1.90734 1.51203 1.59044 1.41059 1.20522 0.89836 0.77895 0.81939 1.90701 1.65135 1.45352 1.40230 1.45783 1.07696 1.59378 1.22661 1.21921 0.79254 0.95373 1.00692 0.87295 1.21414 1.01965 0.97877 0.91308 1.20488 1.00636 0.94565 0.94367 1.20470 1.02274 0.98913 0.91653 1.20887 1.02189 0.94767 0.96887 1.21015 1.01403 0.93911 0.98084 1.20681 0.98362 1.00139 0.91122 1.21601 0.97476 0.94189 0.96685 1.19773 0.89599 0.93382 0.86997 0.91028 1.42620 1.14376 1.15166 1.64771 1.18986 1.00336 0.88436 1.30020 0.88942 1.24637 0.97232 0.96245 1.00286 1.69687 1.20581 1.16893 1.50188 0.86619 0.80996 0.80682 0.80703 1.20795 1.21552 1.20200 0.91919 0.92969 0.92487 0.90227 0.90928 0.75234 0.89258 0.88892 0.89327 0.76152 0.90863 0.89599 0.87154 0.86690 0.86495 0.86127 0.80179 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.52 37.16 0.32 -1.04 16 2 C -0.13 -1.20 5.55 -26.73 -0.15 -1.35 16 3 C 0.13 1.28 2.67 -69.08 -0.18 1.10 16 4 H 0.11 1.18 7.58 -51.93 -0.39 0.79 16 5 N -0.71 -6.69 4.90 -54.93 -0.27 -6.96 16 6 C 0.51 4.91 6.51 -10.99 -0.07 4.84 16 7 C -0.17 -1.01 10.32 36.01 0.37 -0.63 16 8 O -0.54 -6.97 14.23 5.56 0.08 -6.89 16 9 C 0.51 6.31 7.22 -10.99 -0.08 6.23 16 10 O -0.54 -8.18 15.48 5.56 0.09 -8.10 16 11 N -0.70 -8.50 4.98 -52.43 -0.26 -8.76 16 12 C 0.13 2.00 3.02 -66.51 -0.20 1.80 16 13 H 0.11 1.83 7.45 -51.93 -0.39 1.44 16 14 C -0.09 -1.27 6.49 -26.84 -0.17 -1.44 16 15 C -0.10 -1.55 6.14 -104.21 -0.64 -2.19 16 16 C -0.11 -1.64 10.04 -39.54 -0.40 -2.04 16 17 C -0.13 -1.77 10.05 -39.62 -0.40 -2.17 16 18 C -0.13 -1.86 10.05 -39.62 -0.40 -2.25 16 19 C -0.08 -1.43 10.04 -39.53 -0.40 -1.82 16 20 C -0.10 -1.65 5.76 -104.21 -0.60 -2.25 16 21 C 0.21 3.78 3.12 -68.04 -0.21 3.57 16 22 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 23 N -0.73 -16.19 4.96 -53.53 -0.27 -16.46 16 24 C -0.25 -6.60 10.44 -15.06 -0.16 -6.75 16 25 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 26 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 27 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 28 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 32 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.59 5.65 -51.93 -0.29 0.30 16 35 H 0.08 0.65 7.43 -51.93 -0.39 0.27 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.41 3.59 7.79 -40.82 -0.32 3.27 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.40 4.07 8.02 -40.82 -0.33 3.74 16 42 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 47 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 48 H 0.36 8.13 5.64 -40.82 -0.23 7.90 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -33.25 399.38 -9.42 -42.66 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -7.40 Total: 15.14 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.47 Total: -6.14 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.02 Total: -59.52 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.17 Total: -14.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.25 -9.42 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725032828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.299 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds