Wall clock time and date at job start Wed Apr 1 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47154 * 2 1 4 4 H 1.09002 * 109.47055 * 305.00063 * 3 2 1 5 5 N 1.46511 * 109.46997 * 64.99645 * 3 2 1 6 6 C 1.34770 * 119.99917 * 275.00035 * 5 3 2 7 7 C 1.50706 * 119.99797 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00325 * 359.97438 * 6 5 3 9 9 C 1.50700 * 109.47162 * 184.99505 * 3 2 1 10 10 O 1.21281 * 119.99957 * 239.99844 * 9 3 2 11 11 N 1.34776 * 119.99399 * 60.00359 * 9 3 2 12 12 C 1.46498 * 119.99568 * 179.97438 * 11 9 3 13 13 H 1.08996 * 110.73132 * 31.59651 * 12 11 9 14 14 C 1.54349 * 110.99528 * 268.06961 * 12 11 9 15 15 C 1.51377 * 105.16920 * 268.04544 * 14 12 11 16 16 C 1.38488 * 130.39043 * 162.83365 * 15 14 12 17 17 C 1.38106 * 120.21347 * 179.97438 * 16 15 14 18 18 C 1.38254 * 119.93740 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.92991 * 0.02562 * 18 17 16 20 20 C 1.38214 * 109.75557 * 342.81156 * 15 14 12 21 21 C 1.51370 * 109.76507 * 359.97438 * 20 15 14 22 22 H 1.08999 * 110.30428 * 136.21056 * 21 20 15 23 23 N 1.46498 * 110.30532 * 258.26890 * 21 20 15 24 24 C 1.36939 * 119.99974 * 273.54780 * 23 21 20 25 25 H 1.08005 * 119.99739 * 359.97438 * 24 23 21 26 26 C 1.38810 * 120.00139 * 180.02562 * 24 23 21 27 27 N 1.31617 * 119.99991 * 179.97438 * 26 24 23 28 28 Si 1.86801 * 119.99916 * 359.97438 * 26 24 23 29 29 H 1.48500 * 109.47030 * 90.00703 * 28 26 24 30 30 H 1.48501 * 109.47057 * 210.00434 * 28 26 24 31 31 H 1.48496 * 109.47209 * 330.00435 * 28 26 24 32 32 H 1.08998 * 109.46612 * 60.00034 * 1 2 3 33 33 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46987 * 299.99866 * 1 2 3 35 35 H 1.08998 * 109.46987 * 240.00134 * 2 1 3 36 36 H 1.08998 * 109.46612 * 119.99966 * 2 1 3 37 37 H 0.97001 * 119.99381 * 95.00432 * 5 3 2 38 38 H 1.09002 * 109.47300 * 59.99484 * 7 6 5 39 39 H 1.08996 * 109.47103 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46764 * 300.00153 * 7 6 5 41 41 H 0.96996 * 120.00598 * 359.97438 * 11 9 3 42 42 H 1.08999 * 110.30056 * 26.96481 * 14 12 11 43 43 H 1.09002 * 110.30286 * 149.02517 * 14 12 11 44 44 H 1.08002 * 119.89256 * 359.97409 * 16 15 14 45 45 H 1.08009 * 120.03150 * 180.02562 * 17 16 15 46 46 H 1.07998 * 120.03173 * 180.27492 * 18 17 16 47 47 H 1.07999 * 119.88781 * 179.97438 * 19 18 17 48 48 H 0.96994 * 120.00361 * 93.53843 * 23 21 20 49 49 H 0.97004 * 120.00227 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4351 2.6644 1.3669 7 6 0.0366 3.3386 2.6545 8 8 -0.3392 2.6327 0.4341 9 6 3.5420 1.4443 -0.1237 10 8 4.2216 1.9436 0.7479 11 7 4.1298 0.8911 -1.2030 12 6 5.5898 0.8933 -1.3236 13 1 6.0582 0.8361 -0.3411 14 6 6.0793 2.1386 -2.0930 15 6 6.1493 1.7067 -3.5422 16 6 6.2144 2.4615 -4.7014 17 6 6.2724 1.8398 -5.9332 18 6 6.2651 0.4594 -6.0104 19 6 6.1992 -0.2950 -4.8555 20 6 6.1425 0.3267 -3.6192 21 6 6.0681 -0.2633 -2.2272 22 1 5.3521 -1.0848 -2.2024 23 7 7.3900 -0.7291 -1.8010 24 6 7.8103 -1.9903 -2.1296 25 1 7.1670 -2.6417 -2.7025 26 6 9.0627 -2.4319 -1.7254 27 7 9.4664 -3.6442 -2.0407 28 14 10.1751 -1.3054 -0.7338 29 1 9.9131 -1.5009 0.7147 30 1 11.5946 -1.6274 -1.0280 31 1 9.9019 0.1076 -1.1000 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.2719 2.1232 1.9978 38 1 0.7281 4.1541 2.8667 39 1 -0.9745 3.7345 2.5595 40 1 0.0680 2.6145 3.4686 41 1 3.5862 0.4915 -1.9000 42 1 5.3700 2.9581 -1.9765 43 1 7.0652 2.4391 -1.7383 44 1 6.2197 3.5399 -4.6420 45 1 6.3234 2.4314 -6.8355 46 1 6.3149 -0.0284 -6.9727 47 1 6.1931 -1.3732 -4.9166 48 1 7.9677 -0.1442 -1.2863 49 1 10.3417 -3.9527 -1.7586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725032828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:41 Heat of formation + Delta-G solvation = -56.161307 kcal Electronic energy + Delta-G solvation = -30647.238049 eV Core-core repulsion = 26573.267410 eV Total energy + Delta-G solvation = -4073.970638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87599 -41.06325 -39.95745 -37.67315 -36.40357 -35.87295 -34.25939 -33.40436 -32.99165 -31.61860 -30.62130 -29.52815 -27.94112 -27.64932 -24.81035 -23.60219 -23.05935 -22.07547 -21.66922 -21.48001 -21.23493 -19.87835 -18.78972 -17.95368 -17.50091 -17.11582 -16.91019 -16.73227 -16.31484 -16.23833 -15.79789 -15.66922 -15.47003 -15.23306 -14.94163 -14.71537 -14.39817 -14.32999 -14.25302 -14.01765 -13.58890 -13.54862 -13.31982 -13.10627 -13.05792 -12.91315 -12.82448 -12.65438 -12.47153 -12.42801 -12.20936 -12.03465 -11.89714 -11.82419 -11.68485 -11.09030 -11.01413 -10.91634 -10.29220 -10.11631 -9.66379 -9.49377 -9.33670 -8.04758 -5.39573 0.51768 0.56778 1.36440 1.38148 1.40724 1.44652 1.60557 1.78372 2.40012 2.45398 2.89419 3.26384 3.33400 3.43048 3.63669 3.82558 3.84470 3.94234 4.01057 4.02575 4.14035 4.23823 4.29535 4.35324 4.43314 4.49357 4.58249 4.64686 4.67720 4.72038 4.77743 4.81219 4.86602 4.92782 5.00322 5.06702 5.13168 5.18511 5.27314 5.34766 5.36717 5.42176 5.62650 5.69001 5.72016 5.86139 6.17313 6.20080 6.37316 6.52778 7.01259 7.03674 7.23204 7.74754 7.93297 9.15962 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.003203 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.011037 B = 8740.632891 C =10028.146467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.135 3.865 4 H 0.114 0.886 5 N -0.710 5.710 6 C 0.509 3.491 7 C -0.168 4.168 8 O -0.579 6.579 9 C 0.518 3.482 10 O -0.564 6.564 11 N -0.696 5.696 12 C 0.146 3.854 13 H 0.094 0.906 14 C -0.081 4.081 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.109 4.109 20 C -0.118 4.118 21 C 0.210 3.790 22 H 0.064 0.936 23 N -0.734 5.734 24 C -0.223 4.223 25 H 0.063 0.937 26 C -0.055 4.055 27 N -0.979 5.979 28 Si 0.944 3.056 29 H -0.277 1.277 30 H -0.297 1.297 31 H -0.255 1.255 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.415 0.585 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.414 0.586 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.139 0.861 45 H 0.150 0.850 46 H 0.137 0.863 47 H 0.101 0.899 48 H 0.366 0.634 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.645 15.799 2.898 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.026 3.974 4 H 0.132 0.868 5 N -0.364 5.364 6 C 0.298 3.702 7 C -0.227 4.227 8 O -0.459 6.459 9 C 0.304 3.696 10 O -0.443 6.443 11 N -0.348 5.348 12 C 0.039 3.961 13 H 0.112 0.888 14 C -0.119 4.119 15 C -0.102 4.102 16 C -0.134 4.134 17 C -0.139 4.139 18 C -0.147 4.147 19 C -0.128 4.128 20 C -0.120 4.120 21 C 0.101 3.899 22 H 0.082 0.918 23 N -0.376 5.376 24 C -0.354 4.354 25 H 0.081 0.919 26 C -0.247 4.247 27 N -0.629 5.629 28 Si 0.771 3.229 29 H -0.204 1.204 30 H -0.224 1.224 31 H -0.180 1.180 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.251 0.749 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.156 0.844 45 H 0.167 0.833 46 H 0.155 0.845 47 H 0.119 0.881 48 H 0.200 0.800 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.702 15.899 2.815 23.959 hybrid contribution 1.414 -0.348 0.338 1.495 sum -16.288 15.551 3.153 22.739 Atomic orbital electron populations 1.21713 0.94001 1.01378 1.02216 1.21929 0.97563 0.93212 1.03962 1.20788 0.89559 0.96527 0.90547 0.86793 1.45859 1.17344 1.57382 1.15847 1.21443 0.80414 0.77176 0.91126 1.21937 1.04627 1.02502 0.93596 1.90719 1.52116 1.60480 1.42619 1.20839 0.90576 0.77006 0.81179 1.90691 1.65928 1.46561 1.41117 1.45646 1.06585 1.59403 1.23136 1.21568 0.80751 0.94509 0.99249 0.88833 1.21367 1.02295 0.97699 0.90525 1.20637 1.00452 0.93785 0.95368 1.20852 1.00961 1.00385 0.91169 1.21309 1.00027 0.94397 0.98142 1.21283 1.00662 0.94704 0.98064 1.20751 1.00052 0.99603 0.92353 1.21410 0.99578 0.95167 0.95894 1.19904 0.87326 0.94242 0.88413 0.91775 1.42561 1.16015 1.13779 1.65226 1.18918 0.99396 0.89606 1.27475 0.91900 1.25362 0.99116 0.97738 1.02481 1.69854 1.21055 1.19127 1.52826 0.85580 0.78321 0.79784 0.79173 1.20351 1.22381 1.17996 0.92819 0.92051 0.93341 0.89254 0.91066 0.74719 0.87663 0.88744 0.87345 0.74904 0.89306 0.89686 0.84355 0.83266 0.84478 0.88108 0.80041 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.52 71.98 0.61 -1.86 16 2 C -0.13 -2.21 5.55 30.60 0.17 -2.04 16 3 C 0.13 2.56 2.67 44.24 0.12 2.68 16 4 H 0.11 2.23 7.58 -2.39 -0.02 2.21 16 5 N -0.71 -12.41 4.90 -446.08 -2.19 -14.60 16 6 C 0.51 9.08 6.51 87.66 0.57 9.65 16 7 C -0.17 -1.58 10.32 71.24 0.74 -0.84 16 8 O -0.58 -14.46 14.23 -3.02 -0.04 -14.50 16 9 C 0.52 12.10 7.22 87.66 0.63 12.73 16 10 O -0.56 -16.50 15.48 -3.03 -0.05 -16.55 16 11 N -0.70 -16.04 4.98 -438.18 -2.18 -18.22 16 12 C 0.15 4.24 3.02 45.91 0.14 4.38 16 13 H 0.09 3.08 7.45 -2.39 -0.02 3.06 16 14 C -0.08 -2.17 6.49 30.52 0.20 -1.98 16 15 C -0.10 -2.95 6.14 -19.60 -0.12 -3.07 16 16 C -0.12 -2.89 10.04 22.30 0.22 -2.66 16 17 C -0.12 -2.88 10.05 22.24 0.22 -2.65 16 18 C -0.13 -3.56 10.05 22.24 0.22 -3.34 16 19 C -0.11 -3.69 10.04 22.30 0.22 -3.47 16 20 C -0.12 -3.97 5.76 -19.60 -0.11 -4.09 16 21 C 0.21 7.48 3.12 44.92 0.14 7.62 16 22 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 23 N -0.73 -32.83 4.96 -323.27 -1.60 -34.43 16 24 C -0.22 -12.20 10.44 84.03 0.88 -11.32 16 25 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 26 C -0.05 -3.17 5.50 84.86 0.47 -2.70 16 27 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 28 Si 0.94 45.00 27.74 68.60 1.90 46.90 16 29 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 30 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 31 H -0.26 -11.12 6.52 99.48 0.65 -10.48 16 32 H 0.05 1.07 7.85 -2.39 -0.02 1.06 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.97 5.65 -2.39 -0.01 0.95 16 35 H 0.09 1.36 7.43 -2.39 -0.02 1.34 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.42 6.65 7.79 -92.71 -0.72 5.93 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 40 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.41 7.90 8.02 -92.71 -0.74 7.16 16 42 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 44 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 46 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 47 H 0.10 3.70 8.06 -2.91 -0.02 3.68 16 48 H 0.37 16.06 5.64 -92.71 -0.52 15.54 16 49 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.61 399.38 0.41 -73.20 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -1.06 Total: 42.37 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.32 Total: -2.95 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.67 Total: -128.48 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.09 Total: -31.05 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Total: -73.61 0.41 -73.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725032828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds