Wall clock time and date at job start Wed Apr 1 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 N 1.46497 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00201 * 275.31900 * 4 3 2 6 6 H 1.07994 * 120.00663 * 37.56955 * 5 4 3 7 7 C 1.38819 * 119.99742 * 217.57093 * 5 4 3 8 8 N 1.31619 * 120.00140 * 21.43054 * 7 5 4 9 9 Si 1.86805 * 119.99803 * 201.42800 * 7 5 4 10 10 H 1.48496 * 109.47174 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46939 * 120.00298 * 9 7 5 12 12 H 1.48500 * 109.47036 * 240.00076 * 9 7 5 13 13 C 1.46508 * 120.00018 * 95.30873 * 4 3 2 14 14 C 1.53000 * 109.46962 * 270.00694 * 13 4 3 15 15 N 1.46498 * 109.46675 * 179.97438 * 14 13 4 16 16 C 1.34782 * 120.00006 * 179.72221 * 15 14 13 17 17 O 1.21278 * 119.99760 * 0.27924 * 16 15 14 18 18 C 1.50703 * 120.00280 * 180.27705 * 16 15 14 19 19 C 1.50697 * 109.47241 * 180.02562 * 18 16 15 20 20 C 1.38295 * 119.81341 * 89.99984 * 19 18 16 21 21 C 1.38401 * 119.82451 * 179.97438 * 20 19 18 22 22 C 1.37676 * 119.91121 * 0.02562 * 21 20 19 23 23 C 1.38896 * 120.81134 * 359.97438 * 22 21 20 24 24 C 1.37939 * 119.81035 * 269.72643 * 19 18 16 25 25 N 1.39528 * 110.22757 * 179.97438 * 23 22 21 26 26 C 1.34369 * 112.25061 * 359.97438 * 25 23 22 27 27 O 1.21285 * 126.44635 * 180.02562 * 26 25 23 28 28 C 1.51136 * 132.84320 * 179.97438 * 22 21 20 29 29 H 1.09000 * 109.47768 * 59.99972 * 1 2 3 30 30 H 1.09007 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47490 * 299.99854 * 1 2 3 32 32 H 1.09003 * 109.47012 * 240.00354 * 2 1 3 33 33 H 1.08994 * 109.47382 * 119.99990 * 2 1 3 34 34 H 1.09003 * 109.46947 * 60.00315 * 3 2 1 35 35 H 1.08999 * 109.47459 * 300.00079 * 3 2 1 36 36 H 0.96994 * 120.00046 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46866 * 150.00396 * 13 4 3 38 38 H 1.09000 * 109.46585 * 30.00145 * 13 4 3 39 39 H 1.08994 * 109.47574 * 60.00136 * 14 13 4 40 40 H 1.09000 * 109.47022 * 299.99183 * 14 13 4 41 41 H 0.97004 * 120.00457 * 359.97438 * 15 14 13 42 42 H 1.09007 * 109.46828 * 300.00391 * 18 16 15 43 43 H 1.08999 * 109.46961 * 59.99466 * 18 16 15 44 44 H 1.08002 * 120.09123 * 359.97438 * 20 19 18 45 45 H 1.08001 * 120.03673 * 179.97438 * 21 20 19 46 46 H 1.08004 * 119.93436 * 359.97438 * 24 19 18 47 47 H 0.97004 * 123.87526 * 180.02562 * 25 23 22 48 48 H 1.08997 * 110.51621 * 298.68142 * 28 22 21 49 49 H 1.09003 * 110.51427 * 61.39458 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3330 1.1817 6 1 3.8170 0.6876 1.9635 7 6 5.3612 2.0514 1.3741 8 7 5.6019 3.1241 0.6503 9 14 6.5969 1.4958 2.6602 10 1 6.0942 0.2711 3.3330 11 1 7.8960 1.2017 2.0038 12 1 6.7828 2.5727 3.6656 13 6 4.2379 1.5599 -1.2624 14 6 4.4931 0.1644 -1.8354 15 7 5.2256 0.2818 -3.0987 16 6 5.5677 -0.8268 -3.7848 17 8 5.2646 -1.9211 -3.3590 18 6 6.3266 -0.7064 -5.0812 19 6 6.5823 -2.0811 -5.6432 20 6 5.6623 -2.6550 -6.5016 21 6 5.8971 -3.9173 -7.0182 22 6 7.0445 -4.5968 -6.6757 23 6 7.9761 -4.0312 -5.8147 24 6 7.7353 -2.7574 -5.3030 25 7 9.0461 -4.9052 -5.6200 26 6 8.8984 -6.0510 -6.3062 27 8 9.6713 -6.9856 -6.3229 28 6 7.5863 -5.9556 -7.0555 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 6.4207 3.6263 0.7850 37 1 5.1902 2.0595 -1.0847 38 1 3.6490 2.1417 -1.9715 39 1 3.5409 -0.3352 -2.0131 40 1 5.0820 -0.4174 -1.1263 41 1 5.4677 1.1571 -3.4396 42 1 5.7395 -0.1264 -5.7934 43 1 7.2773 -0.2047 -4.9004 44 1 4.7629 -2.1196 -6.7680 45 1 5.1807 -4.3689 -7.6885 46 1 8.4513 -2.3005 -4.6358 47 1 9.8086 -4.7087 -5.0536 48 1 6.9047 -6.7425 -6.7329 49 1 7.7553 -6.0125 -8.1309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731865646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:51 Heat of formation + Delta-G solvation = -30.501047 kcal Electronic energy + Delta-G solvation = -29248.098938 eV Core-core repulsion = 25175.241012 eV Total energy + Delta-G solvation = -4072.857926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67180 -39.62626 -38.49418 -36.57889 -36.05584 -34.22800 -33.12996 -32.90180 -31.02687 -30.47026 -29.87309 -28.24457 -26.14794 -25.59206 -23.41419 -23.02785 -21.81471 -21.29671 -20.82228 -20.32537 -19.87051 -18.02174 -17.11468 -16.91987 -16.42632 -16.26141 -16.05580 -15.50068 -15.18335 -15.03064 -14.67418 -14.40375 -14.25616 -14.06109 -13.84761 -13.57569 -13.26852 -13.14287 -12.90982 -12.87489 -12.76688 -12.63741 -12.17817 -11.89972 -11.60733 -11.50933 -11.21922 -11.20496 -11.00921 -10.97806 -10.77942 -10.50467 -10.45649 -10.39604 -10.11454 -9.90549 -9.79738 -9.56365 -8.94257 -8.61127 -8.48198 -8.25459 -6.66326 -5.88063 -3.46593 0.91342 1.07901 2.17255 2.71052 2.91283 3.29562 3.35833 3.39867 3.43954 3.75170 3.82076 4.11321 4.42633 4.50249 4.55839 4.86418 5.02654 5.05407 5.07644 5.15946 5.21194 5.23744 5.34768 5.44804 5.54289 5.62605 5.64701 5.73842 5.84713 5.99624 6.08639 6.11102 6.18763 6.25173 6.25893 6.39557 6.39688 6.47447 6.50984 6.59610 6.63283 6.76466 6.84741 6.94849 6.98392 7.15388 7.49558 7.64947 7.76638 7.88789 8.43519 8.55381 9.10386 9.72181 10.29940 11.11885 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.002260 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.097182 B =12387.405415 C =13507.401568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.259 4.259 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.137 3.863 14 C 0.098 3.902 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.539 6.539 18 C -0.107 4.107 19 C -0.023 4.023 20 C -0.122 4.122 21 C -0.065 4.065 22 C -0.147 4.147 23 C 0.139 3.861 24 C -0.121 4.121 25 N -0.659 5.659 26 C 0.528 3.472 27 O -0.510 6.510 28 C -0.113 4.113 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.413 0.587 48 H 0.122 0.878 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -7.932 -17.957 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.389 4.389 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.372 5.372 16 C 0.292 3.708 17 O -0.416 6.416 18 C -0.147 4.147 19 C -0.025 4.025 20 C -0.141 4.141 21 C -0.084 4.084 22 C -0.150 4.150 23 C 0.042 3.958 24 C -0.142 4.142 25 N -0.302 5.302 26 C 0.317 3.683 27 O -0.385 6.385 28 C -0.152 4.152 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.231 0.769 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.251 0.749 48 H 0.140 0.860 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.032 -9.184 -17.669 19.940 hybrid contribution 1.225 0.307 0.927 1.567 sum 2.257 -8.877 -16.742 19.084 Atomic orbital electron populations 1.21722 0.97330 1.00410 1.00997 1.22184 0.93815 1.00936 1.01574 1.20937 0.85048 0.92962 0.98911 1.43615 0.99444 1.84811 1.02100 1.19055 1.05580 1.20303 0.93922 0.92052 1.25178 1.00842 0.94570 0.98113 1.70000 1.25622 1.14823 1.42513 0.86349 0.81473 0.78488 0.81244 1.19967 1.21428 1.21565 1.21061 1.00297 0.91228 0.86427 1.22447 0.94829 1.02690 0.82765 1.46149 1.57924 1.08411 1.24727 1.20373 0.80066 0.84831 0.85561 1.90721 1.54741 1.26559 1.69619 1.20749 1.02540 0.95304 0.96106 1.18992 0.93159 0.94980 0.95328 1.20924 0.99188 0.95484 0.98476 1.20187 0.95073 0.93976 0.99142 1.19746 0.96711 0.96519 1.01993 1.18012 0.88292 0.91714 0.97767 1.20178 0.99162 0.92539 1.02281 1.43731 1.22271 1.16998 1.47177 1.20633 0.87843 0.80945 0.78923 1.90816 1.49434 1.34351 1.63938 1.21033 0.95050 0.96489 1.02653 0.93471 0.93810 0.93198 0.92948 0.92374 0.93593 0.94753 0.93581 0.88414 0.95328 0.93047 0.91881 0.76931 0.87648 0.87825 0.85282 0.85275 0.85628 0.74893 0.85974 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.15 0.37 -1.76 16 2 C -0.15 -2.60 6.23 -26.73 -0.17 -2.77 16 3 C 0.15 2.99 5.72 -4.04 -0.02 2.97 16 4 N -0.58 -13.62 2.43 -173.24 -0.42 -14.04 16 5 C -0.26 -6.79 9.45 -15.06 -0.14 -6.93 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 8 N -0.89 -24.12 11.47 55.49 0.64 -23.48 16 9 Si 0.90 21.02 29.61 -169.99 -5.03 15.99 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.14 2.92 5.45 -4.04 -0.02 2.89 16 14 C 0.10 1.89 6.00 -4.04 -0.02 1.86 16 15 N -0.72 -10.87 5.56 -60.30 -0.33 -11.21 16 16 C 0.51 7.48 7.82 -10.98 -0.09 7.39 16 17 O -0.54 -10.35 16.03 5.56 0.09 -10.26 16 18 C -0.11 -1.03 5.82 -29.03 -0.17 -1.20 16 19 C -0.02 -0.25 4.36 -104.71 -0.46 -0.71 16 20 C -0.12 -1.17 9.71 -39.50 -0.38 -1.55 16 21 C -0.07 -0.57 10.04 -39.73 -0.40 -0.97 16 22 C -0.15 -1.38 6.35 -104.37 -0.66 -2.04 16 23 C 0.14 1.44 7.11 -83.69 -0.60 0.85 16 24 C -0.12 -1.29 9.71 -39.27 -0.38 -1.67 16 25 N -0.66 -6.43 5.88 -9.70 -0.06 -6.49 16 26 C 0.53 5.68 8.71 -10.82 -0.09 5.59 16 27 O -0.51 -7.15 18.03 5.55 0.10 -7.05 16 28 C -0.11 -0.89 6.88 -28.48 -0.20 -1.09 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 36 H 0.25 6.66 8.31 -40.82 -0.34 6.33 16 37 H 0.10 2.34 5.52 -51.93 -0.29 2.05 16 38 H 0.03 0.56 7.86 -51.93 -0.41 0.15 16 39 H 0.05 1.02 6.64 -51.93 -0.34 0.68 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.40 4.87 8.47 -40.82 -0.35 4.52 16 42 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 43 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 47 H 0.41 3.34 8.96 -40.82 -0.37 2.98 16 48 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 408.12 15.07 6.15 6.15 Total: -1.00 -33.38 408.12 -9.93 -43.31 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.54 Total: 5.95 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.52 Total: 1.13 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.18 Total: -55.22 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.19 Total: -17.31 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.38 -9.93 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731865646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.808 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds