Wall clock time and date at job start Wed Apr 1 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 N 1.46497 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00201 * 275.31900 * 4 3 2 6 6 H 1.07994 * 120.00663 * 37.56955 * 5 4 3 7 7 C 1.38819 * 119.99742 * 217.57093 * 5 4 3 8 8 N 1.31619 * 120.00140 * 21.43054 * 7 5 4 9 9 Si 1.86805 * 119.99803 * 201.42800 * 7 5 4 10 10 H 1.48496 * 109.47174 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46939 * 120.00298 * 9 7 5 12 12 H 1.48500 * 109.47036 * 240.00076 * 9 7 5 13 13 C 1.46508 * 120.00018 * 95.30873 * 4 3 2 14 14 C 1.53000 * 109.46962 * 270.00694 * 13 4 3 15 15 N 1.46498 * 109.46675 * 179.97438 * 14 13 4 16 16 C 1.34782 * 120.00006 * 179.72221 * 15 14 13 17 17 O 1.21278 * 119.99760 * 0.27924 * 16 15 14 18 18 C 1.50703 * 120.00280 * 180.27705 * 16 15 14 19 19 C 1.50697 * 109.47241 * 180.02562 * 18 16 15 20 20 C 1.38295 * 119.81341 * 89.99984 * 19 18 16 21 21 C 1.38401 * 119.82451 * 179.97438 * 20 19 18 22 22 C 1.37676 * 119.91121 * 0.02562 * 21 20 19 23 23 C 1.38896 * 120.81134 * 359.97438 * 22 21 20 24 24 C 1.37939 * 119.81035 * 269.72643 * 19 18 16 25 25 N 1.39528 * 110.22757 * 179.97438 * 23 22 21 26 26 C 1.34369 * 112.25061 * 359.97438 * 25 23 22 27 27 O 1.21285 * 126.44635 * 180.02562 * 26 25 23 28 28 C 1.51136 * 132.84320 * 179.97438 * 22 21 20 29 29 H 1.09000 * 109.47768 * 59.99972 * 1 2 3 30 30 H 1.09007 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47490 * 299.99854 * 1 2 3 32 32 H 1.09003 * 109.47012 * 240.00354 * 2 1 3 33 33 H 1.08994 * 109.47382 * 119.99990 * 2 1 3 34 34 H 1.09003 * 109.46947 * 60.00315 * 3 2 1 35 35 H 1.08999 * 109.47459 * 300.00079 * 3 2 1 36 36 H 0.96994 * 120.00046 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46866 * 150.00396 * 13 4 3 38 38 H 1.09000 * 109.46585 * 30.00145 * 13 4 3 39 39 H 1.08994 * 109.47574 * 60.00136 * 14 13 4 40 40 H 1.09000 * 109.47022 * 299.99183 * 14 13 4 41 41 H 0.97004 * 120.00457 * 359.97438 * 15 14 13 42 42 H 1.09007 * 109.46828 * 300.00391 * 18 16 15 43 43 H 1.08999 * 109.46961 * 59.99466 * 18 16 15 44 44 H 1.08002 * 120.09123 * 359.97438 * 20 19 18 45 45 H 1.08001 * 120.03673 * 179.97438 * 21 20 19 46 46 H 1.08004 * 119.93436 * 359.97438 * 24 19 18 47 47 H 0.97004 * 123.87526 * 180.02562 * 25 23 22 48 48 H 1.08997 * 110.51621 * 298.68142 * 28 22 21 49 49 H 1.09003 * 110.51427 * 61.39458 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3330 1.1817 6 1 3.8170 0.6876 1.9635 7 6 5.3612 2.0514 1.3741 8 7 5.6019 3.1241 0.6503 9 14 6.5969 1.4958 2.6602 10 1 6.0942 0.2711 3.3330 11 1 7.8960 1.2017 2.0038 12 1 6.7828 2.5727 3.6656 13 6 4.2379 1.5599 -1.2624 14 6 4.4931 0.1644 -1.8354 15 7 5.2256 0.2818 -3.0987 16 6 5.5677 -0.8268 -3.7848 17 8 5.2646 -1.9211 -3.3590 18 6 6.3266 -0.7064 -5.0812 19 6 6.5823 -2.0811 -5.6432 20 6 5.6623 -2.6550 -6.5016 21 6 5.8971 -3.9173 -7.0182 22 6 7.0445 -4.5968 -6.6757 23 6 7.9761 -4.0312 -5.8147 24 6 7.7353 -2.7574 -5.3030 25 7 9.0461 -4.9052 -5.6200 26 6 8.8984 -6.0510 -6.3062 27 8 9.6713 -6.9856 -6.3229 28 6 7.5863 -5.9556 -7.0555 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 6.4207 3.6263 0.7850 37 1 5.1902 2.0595 -1.0847 38 1 3.6490 2.1417 -1.9715 39 1 3.5409 -0.3352 -2.0131 40 1 5.0820 -0.4174 -1.1263 41 1 5.4677 1.1571 -3.4396 42 1 5.7395 -0.1264 -5.7934 43 1 7.2773 -0.2047 -4.9004 44 1 4.7629 -2.1196 -6.7680 45 1 5.1807 -4.3689 -7.6885 46 1 8.4513 -2.3005 -4.6358 47 1 9.8086 -4.7087 -5.0536 48 1 6.9047 -6.7425 -6.7329 49 1 7.7553 -6.0125 -8.1309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731865646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:50 Heat of formation + Delta-G solvation = -51.845561 kcal Electronic energy + Delta-G solvation = -29249.024505 eV Core-core repulsion = 25175.241012 eV Total energy + Delta-G solvation = -4073.783494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.42774 -40.76686 -39.42478 -38.22954 -36.94604 -35.63628 -34.59777 -33.88304 -32.64298 -31.47650 -30.58796 -29.65711 -27.34114 -27.08252 -24.97082 -23.75589 -22.74656 -22.46945 -22.08139 -21.78776 -21.04993 -18.85514 -18.70735 -17.82293 -17.72070 -17.06044 -17.02852 -16.98917 -16.46559 -16.30541 -15.97473 -15.72080 -15.48389 -15.12356 -14.86534 -14.71531 -14.62362 -14.31396 -14.27227 -14.06009 -13.70831 -13.36255 -13.34622 -13.09944 -12.94108 -12.90912 -12.70022 -12.61307 -12.50703 -12.20366 -12.02852 -11.90306 -11.86272 -11.80552 -11.64559 -11.35900 -11.32022 -10.87290 -10.53545 -9.95066 -9.68291 -9.01281 -8.58426 -7.86015 -5.48542 0.16710 0.34888 1.38197 1.40982 1.46251 1.55135 1.75053 1.96671 2.29479 2.50206 2.85786 3.10174 3.21458 3.43170 3.73602 3.76113 3.89260 4.10631 4.19493 4.23960 4.35395 4.36783 4.41754 4.48476 4.49068 4.57075 4.58194 4.68436 4.69659 4.76364 4.87439 4.87799 4.98107 5.00392 5.13249 5.18321 5.25502 5.28209 5.41592 5.44342 5.49638 5.52688 5.63470 5.66948 5.67287 5.72577 5.77317 6.04983 6.45224 6.70794 6.86364 7.15279 7.38510 7.83498 8.35016 9.09376 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.002260 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.097182 B =12387.405415 C =13507.401568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.267 4.267 6 H 0.049 0.951 7 C -0.027 4.027 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.287 1.287 13 C 0.145 3.855 14 C 0.122 3.878 15 N -0.715 5.715 16 C 0.506 3.494 17 O -0.587 6.587 18 C -0.094 4.094 19 C -0.042 4.042 20 C -0.127 4.127 21 C -0.066 4.066 22 C -0.148 4.148 23 C 0.118 3.882 24 C -0.135 4.135 25 N -0.656 5.656 26 C 0.522 3.478 27 O -0.551 6.551 28 C -0.105 4.105 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.024 0.976 41 H 0.414 0.586 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.147 0.853 45 H 0.159 0.841 46 H 0.127 0.873 47 H 0.416 0.584 48 H 0.139 0.861 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -7.865 -20.004 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.319 5.319 5 C -0.398 4.398 6 H 0.066 0.934 7 C -0.225 4.225 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.214 1.214 13 C 0.018 3.982 14 C -0.005 4.005 15 N -0.368 5.368 16 C 0.294 3.706 17 O -0.467 6.467 18 C -0.133 4.133 19 C -0.043 4.043 20 C -0.146 4.146 21 C -0.084 4.084 22 C -0.151 4.151 23 C 0.022 3.978 24 C -0.155 4.155 25 N -0.299 5.299 26 C 0.312 3.688 27 O -0.430 6.430 28 C -0.143 4.143 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.176 0.824 46 H 0.145 0.855 47 H 0.255 0.745 48 H 0.156 0.844 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.103 -9.072 -19.737 21.722 hybrid contribution 1.522 0.299 1.549 2.192 sum 1.419 -8.773 -18.188 20.244 Atomic orbital electron populations 1.21655 0.94234 1.01753 1.02037 1.22011 0.96430 0.98826 1.00162 1.21042 0.83386 0.94448 0.99078 1.43857 1.00861 1.85082 1.02069 1.19143 1.06176 1.19740 0.94718 0.93376 1.25707 1.02055 0.94792 0.99950 1.70076 1.25911 1.15484 1.43737 0.85539 0.79523 0.77923 0.79426 1.20057 1.21503 1.21356 1.20941 0.99156 0.92064 0.86081 1.21835 0.94266 1.00579 0.83835 1.45994 1.57622 1.09795 1.23342 1.21265 0.79166 0.83573 0.86633 1.90701 1.56588 1.28308 1.71102 1.20762 1.03228 0.95830 0.93514 1.19183 0.93491 0.95551 0.96123 1.21262 0.99428 0.95959 0.97952 1.20534 0.95149 0.93640 0.99054 1.20028 0.96689 0.96996 1.01413 1.18193 0.88876 0.92000 0.98753 1.20350 0.99699 0.92915 1.02580 1.43770 1.22387 1.16837 1.46872 1.21116 0.88467 0.80417 0.78840 1.90790 1.50997 1.35703 1.65504 1.21089 0.93380 0.96135 1.03716 0.91925 0.92342 0.92670 0.93566 0.94572 0.94800 0.93050 0.93676 0.90857 0.93568 0.93614 0.95788 0.75020 0.84108 0.85629 0.83500 0.82359 0.85488 0.74520 0.84356 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.13 -4.76 6.23 30.59 0.19 -4.57 16 3 C 0.15 5.86 5.72 86.38 0.49 6.35 16 4 N -0.60 -28.40 2.43 -702.00 -1.71 -30.11 16 5 C -0.27 -14.30 9.45 84.04 0.79 -13.50 16 6 H 0.05 2.65 7.92 -2.91 -0.02 2.63 16 7 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 8 N -0.91 -49.84 11.47 21.65 0.25 -49.59 16 9 Si 0.95 43.84 29.61 68.60 2.03 45.87 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.14 6.15 5.45 86.38 0.47 6.62 16 14 C 0.12 4.72 6.00 86.38 0.52 5.24 16 15 N -0.72 -20.88 5.56 -463.06 -2.57 -23.45 16 16 C 0.51 14.32 7.82 87.66 0.69 15.01 16 17 O -0.59 -22.45 16.03 -3.02 -0.05 -22.50 16 18 C -0.09 -1.57 5.82 29.10 0.17 -1.41 16 19 C -0.04 -0.82 4.36 -19.92 -0.09 -0.90 16 20 C -0.13 -2.10 9.71 22.32 0.22 -1.89 16 21 C -0.07 -0.96 10.04 22.18 0.22 -0.73 16 22 C -0.15 -2.50 6.35 -19.70 -0.13 -2.62 16 23 C 0.12 2.36 7.11 38.34 0.27 2.63 16 24 C -0.13 -2.76 9.71 22.47 0.22 -2.54 16 25 N -0.66 -12.74 5.88 -303.22 -1.78 -14.53 16 26 C 0.52 11.02 8.71 87.94 0.77 11.78 16 27 O -0.55 -15.65 18.03 -3.05 -0.05 -15.70 16 28 C -0.10 -1.45 6.88 29.46 0.20 -1.24 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.05 1.68 6.64 -2.39 -0.02 1.66 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 35 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 36 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 37 H 0.07 3.54 5.52 -2.39 -0.01 3.53 16 38 H 0.05 1.77 7.86 -2.39 -0.02 1.75 16 39 H 0.05 1.83 6.64 -2.39 -0.02 1.81 16 40 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.41 9.40 8.47 -92.71 -0.79 8.61 16 42 H 0.14 1.39 8.08 -2.38 -0.02 1.37 16 43 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 46 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 47 H 0.42 6.96 8.96 -92.71 -0.83 6.13 16 48 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.42 408.12 1.62 -72.80 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.64 Total: 23.03 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.14 Total: 14.17 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -5.82 Total: -117.67 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.10 Total: -38.20 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.42 1.62 -72.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731865646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.957 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds