Wall clock time and date at job start Wed Apr 1 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46859 * 2 1 4 4 N 1.46497 * 109.46653 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00213 * 264.11599 * 4 3 2 6 6 H 1.08009 * 120.00075 * 188.01946 * 5 4 3 7 7 C 1.38806 * 120.00141 * 8.01828 * 5 4 3 8 8 N 1.31620 * 119.99833 * 25.64386 * 7 5 4 9 9 Si 1.86798 * 120.00238 * 205.64913 * 7 5 4 10 10 H 1.48501 * 109.47279 * 84.98581 * 9 7 5 11 11 H 1.48504 * 109.47483 * 204.98680 * 9 7 5 12 12 H 1.48499 * 109.47106 * 324.98585 * 9 7 5 13 13 C 1.46501 * 119.99941 * 84.11982 * 4 3 2 14 14 C 1.52996 * 109.47072 * 269.99804 * 13 4 3 15 15 N 1.46504 * 109.47432 * 179.97438 * 14 13 4 16 16 C 1.34775 * 120.00409 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99946 * 359.72846 * 16 15 14 18 18 C 1.50694 * 120.00261 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47400 * 179.72768 * 18 16 15 20 20 C 1.50700 * 109.46912 * 180.02562 * 19 18 16 21 21 N 1.29909 * 124.85549 * 89.70335 * 20 19 18 22 22 C 1.36054 * 108.79867 * 179.89449 * 21 20 19 23 23 C 1.39595 * 133.80095 * 180.10285 * 22 21 20 24 24 C 1.37680 * 119.72592 * 180.26136 * 23 22 21 25 25 C 1.38723 * 120.42533 * 0.03201 * 24 23 22 26 26 C 1.37908 * 120.47115 * 359.96519 * 25 24 23 27 27 C 1.38664 * 119.87839 * 0.02562 * 26 25 24 28 28 O 1.34230 * 124.85929 * 269.99529 * 20 19 18 29 29 H 1.09003 * 109.46923 * 59.99583 * 1 2 3 30 30 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47067 * 299.99800 * 1 2 3 32 32 H 1.08996 * 109.47067 * 240.00200 * 2 1 3 33 33 H 1.09000 * 109.46922 * 119.99876 * 2 1 3 34 34 H 1.09003 * 109.46741 * 60.00255 * 3 2 1 35 35 H 1.08994 * 109.47117 * 300.00094 * 3 2 1 36 36 H 0.97000 * 119.99787 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47138 * 149.99691 * 13 4 3 38 38 H 1.09003 * 109.47520 * 29.99548 * 13 4 3 39 39 H 1.08994 * 109.47435 * 59.99631 * 14 13 4 40 40 H 1.09001 * 109.47311 * 299.99730 * 14 13 4 41 41 H 0.97005 * 119.99450 * 0.02562 * 15 14 13 42 42 H 1.09001 * 109.47173 * 299.73512 * 18 16 15 43 43 H 1.09003 * 109.46925 * 59.72407 * 18 16 15 44 44 H 1.08994 * 109.47111 * 299.99987 * 19 18 16 45 45 H 1.08993 * 109.46983 * 60.00319 * 19 18 16 46 46 H 1.07998 * 120.13761 * 0.29556 * 23 22 21 47 47 H 1.08003 * 119.79155 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.76450 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.05553 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.5642 1.1805 6 1 5.2613 1.6945 1.1721 7 6 3.5049 1.5203 2.3874 8 7 2.3546 0.8857 2.4689 9 14 4.2163 2.3618 3.8957 10 1 3.8294 3.7955 3.8914 11 1 3.6883 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3123 -1.2611 14 6 4.4930 -0.1679 -1.5523 15 7 5.2255 -0.2982 -2.8144 16 6 5.5630 -1.5191 -3.2748 17 8 5.2646 -2.5097 -2.6418 18 6 6.3160 -1.6531 -4.5733 19 6 6.5777 -3.1329 -4.8607 20 6 7.3312 -3.2668 -6.1589 21 7 8.6256 -3.2668 -6.2694 22 6 8.9535 -3.4086 -7.5822 23 6 10.1641 -3.4754 -8.2740 24 6 10.1610 -3.6204 -9.6431 25 6 8.9632 -3.6997 -10.3384 26 6 7.7598 -3.6352 -9.6680 27 6 7.7442 -3.4895 -8.2891 28 8 6.7610 -3.3974 -7.3670 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.8766 0.8547 3.3124 37 1 5.1903 1.8368 -1.1838 38 1 3.6492 1.7454 -2.0698 39 1 3.5407 -0.6924 -1.6296 40 1 5.0818 -0.6011 -0.7437 41 1 5.4683 0.4944 -3.3183 42 1 5.7242 -1.2249 -5.3823 43 1 7.2660 -1.1239 -4.4986 44 1 7.1695 -3.5610 -4.0517 45 1 5.6277 -3.6620 -4.9354 46 1 11.0994 -3.4142 -7.7374 47 1 11.0971 -3.6726 -10.1793 48 1 8.9732 -3.8130 -11.4124 49 1 6.8313 -3.6981 -10.2160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731874175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:55 Heat of formation + Delta-G solvation = 18.384446 kcal Electronic energy + Delta-G solvation = -28719.958619 eV Core-core repulsion = 24649.220527 eV Total energy + Delta-G solvation = -4070.738092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.58670 -39.55402 -38.39832 -36.62697 -35.30325 -34.44269 -33.68148 -31.94544 -31.40152 -31.07042 -29.79256 -28.06915 -25.76006 -25.50930 -23.56569 -23.25778 -22.48015 -21.65077 -20.81292 -20.34109 -19.77764 -18.43807 -17.66245 -17.29581 -16.93163 -16.71546 -15.82463 -15.75700 -15.51019 -14.89399 -14.61012 -14.34705 -14.25692 -14.01912 -13.71545 -13.45047 -13.20937 -12.91824 -12.83472 -12.71871 -12.60942 -12.55806 -12.34363 -11.91907 -11.62689 -11.60032 -11.46140 -11.31944 -11.05113 -10.86167 -10.79139 -10.62524 -10.40163 -9.98137 -9.92825 -9.85491 -9.64406 -9.23986 -9.21929 -8.82847 -8.64571 -8.35010 -6.94696 -5.79187 -3.10740 0.28418 0.81104 2.02992 2.12456 2.78921 3.21818 3.26640 3.39445 3.47125 3.47615 3.61125 4.12092 4.40661 4.50039 4.52920 4.61376 4.70969 4.73914 4.88498 4.93913 5.03159 5.24008 5.30733 5.43984 5.48940 5.52825 5.61046 5.67784 5.81638 5.84241 5.90315 5.90634 5.91260 6.18399 6.21917 6.22587 6.28164 6.53478 6.64602 6.67599 6.68125 6.85803 7.00007 7.18655 7.27132 7.29276 7.66394 7.72765 7.78508 8.10239 8.32357 8.42066 9.20966 9.82667 10.26790 11.24213 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.001658 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.088077 B =16884.299806 C =17620.926773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.256 4.256 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.542 6.542 18 C -0.139 4.139 19 C -0.016 4.016 20 C 0.260 3.740 21 N -0.478 5.478 22 C 0.022 3.978 23 C -0.062 4.062 24 C -0.121 4.121 25 C -0.097 4.097 26 C -0.092 4.092 27 C 0.005 3.995 28 O -0.212 6.212 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.003 0.997 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 -6.353 -25.206 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.385 4.385 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.037 4.037 15 N -0.374 5.374 16 C 0.295 3.705 17 O -0.419 6.419 18 C -0.180 4.180 19 C -0.054 4.054 20 C 0.049 3.951 21 N -0.207 5.207 22 C -0.089 4.089 23 C -0.081 4.081 24 C -0.140 4.140 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.045 4.045 28 O -0.103 6.103 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.229 0.771 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.139 0.861 45 H 0.126 0.874 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.266 -6.991 -24.056 27.073 hybrid contribution -0.044 0.542 -0.004 0.544 sum 10.222 -6.449 -24.060 26.925 Atomic orbital electron populations 1.21628 0.98576 0.99320 0.99997 1.22230 0.92913 1.00494 1.01382 1.20928 0.81535 0.94516 0.98401 1.44239 1.01904 1.83592 1.01394 1.19264 0.92248 1.43502 0.83479 0.90757 1.24726 0.97587 1.00089 0.97308 1.70162 1.17191 1.41169 1.25008 0.86372 0.78417 0.79876 0.82596 1.21612 1.21962 1.20765 1.20955 0.96375 0.91739 0.89508 1.22761 0.95933 1.01682 0.83292 1.46195 1.58065 1.07545 1.25591 1.20284 0.79782 0.83885 0.86549 1.90738 1.54923 1.37116 1.59159 1.21641 1.02596 0.96511 0.97229 1.20030 1.00884 0.97728 0.86753 1.26579 0.87777 0.94035 0.86693 1.70702 1.11951 1.20420 1.17659 1.19959 0.94838 1.05021 0.89091 1.20359 0.95614 0.98600 0.93538 1.21065 0.98749 1.00865 0.93348 1.21029 0.91009 0.99145 1.00286 1.19913 0.99820 1.03154 0.88195 1.20370 0.86610 1.05339 0.92214 1.84529 1.36016 1.73602 1.16198 0.95101 0.94809 0.92985 0.96054 0.88329 0.89209 0.97888 0.93705 0.93205 0.93923 0.91533 0.91429 0.77083 0.88395 0.87983 0.86096 0.87384 0.84594 0.84516 0.84222 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.13 -2.92 5.60 -26.73 -0.15 -3.07 16 3 C 0.17 3.96 4.92 -4.04 -0.02 3.94 16 4 N -0.59 -13.88 2.54 -173.24 -0.44 -14.32 16 5 C -0.26 -6.68 9.70 -15.06 -0.15 -6.82 16 6 H 0.07 1.92 7.94 -52.48 -0.42 1.50 16 7 C 0.00 0.02 4.89 -17.43 -0.09 -0.07 16 8 N -0.89 -24.15 8.62 55.49 0.48 -23.67 16 9 Si 0.90 21.21 29.62 -169.99 -5.04 16.17 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.14 2.68 5.82 -4.04 -0.02 2.65 16 14 C 0.09 1.63 5.88 -4.04 -0.02 1.60 16 15 N -0.72 -9.99 5.56 -60.30 -0.33 -10.33 16 16 C 0.51 7.15 7.83 -10.99 -0.09 7.07 16 17 O -0.54 -9.95 15.98 5.56 0.09 -9.86 16 18 C -0.14 -1.34 5.68 -27.89 -0.16 -1.50 16 19 C -0.02 -0.16 5.13 -27.88 -0.14 -0.30 16 20 C 0.26 2.97 7.49 -13.09 -0.10 2.87 16 21 N -0.48 -6.06 11.34 -8.70 -0.10 -6.16 16 22 C 0.02 0.26 7.24 -84.71 -0.61 -0.36 16 23 C -0.06 -0.54 10.10 -39.28 -0.40 -0.93 16 24 C -0.12 -0.74 10.02 -39.61 -0.40 -1.14 16 25 C -0.10 -0.56 10.03 -39.52 -0.40 -0.96 16 26 C -0.09 -0.71 10.06 -39.54 -0.40 -1.11 16 27 C 0.00 0.05 7.43 -38.65 -0.29 -0.23 16 28 O -0.21 -2.46 10.77 3.63 0.04 -2.42 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.46 5.98 -51.93 -0.31 0.15 16 33 H 0.10 2.56 6.33 -51.93 -0.33 2.24 16 34 H 0.09 2.32 5.85 -51.93 -0.30 2.02 16 35 H 0.00 0.06 7.98 -51.93 -0.41 -0.35 16 36 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 39 H 0.07 1.36 5.92 -51.93 -0.31 1.05 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.12 1.28 8.10 -51.93 -0.42 0.86 16 45 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 46 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 47 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 48 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 49 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -32.09 403.50 -9.74 -41.82 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.46 Total: 3.30 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.05 Total: -0.62 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.39 Total: -54.48 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.13 Total: -12.28 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.04 Total: 16.17 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.09 -9.74 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731874175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.209 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds