Wall clock time and date at job start Wed Apr 1 2020 03:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46859 * 2 1 4 4 N 1.46497 * 109.46653 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00213 * 264.11599 * 4 3 2 6 6 H 1.08009 * 120.00075 * 188.01946 * 5 4 3 7 7 C 1.38806 * 120.00141 * 8.01828 * 5 4 3 8 8 N 1.31620 * 119.99833 * 25.64386 * 7 5 4 9 9 Si 1.86798 * 120.00238 * 205.64913 * 7 5 4 10 10 H 1.48501 * 109.47279 * 84.98581 * 9 7 5 11 11 H 1.48504 * 109.47483 * 204.98680 * 9 7 5 12 12 H 1.48499 * 109.47106 * 324.98585 * 9 7 5 13 13 C 1.46501 * 119.99941 * 84.11982 * 4 3 2 14 14 C 1.52996 * 109.47072 * 269.99804 * 13 4 3 15 15 N 1.46504 * 109.47432 * 179.97438 * 14 13 4 16 16 C 1.34775 * 120.00409 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99946 * 359.72846 * 16 15 14 18 18 C 1.50694 * 120.00261 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47400 * 179.72768 * 18 16 15 20 20 C 1.50700 * 109.46912 * 180.02562 * 19 18 16 21 21 N 1.29909 * 124.85549 * 89.70335 * 20 19 18 22 22 C 1.36054 * 108.79867 * 179.89449 * 21 20 19 23 23 C 1.39595 * 133.80095 * 180.10285 * 22 21 20 24 24 C 1.37680 * 119.72592 * 180.26136 * 23 22 21 25 25 C 1.38723 * 120.42533 * 0.03201 * 24 23 22 26 26 C 1.37908 * 120.47115 * 359.96519 * 25 24 23 27 27 C 1.38664 * 119.87839 * 0.02562 * 26 25 24 28 28 O 1.34230 * 124.85929 * 269.99529 * 20 19 18 29 29 H 1.09003 * 109.46923 * 59.99583 * 1 2 3 30 30 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47067 * 299.99800 * 1 2 3 32 32 H 1.08996 * 109.47067 * 240.00200 * 2 1 3 33 33 H 1.09000 * 109.46922 * 119.99876 * 2 1 3 34 34 H 1.09003 * 109.46741 * 60.00255 * 3 2 1 35 35 H 1.08994 * 109.47117 * 300.00094 * 3 2 1 36 36 H 0.97000 * 119.99787 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47138 * 149.99691 * 13 4 3 38 38 H 1.09003 * 109.47520 * 29.99548 * 13 4 3 39 39 H 1.08994 * 109.47435 * 59.99631 * 14 13 4 40 40 H 1.09001 * 109.47311 * 299.99730 * 14 13 4 41 41 H 0.97005 * 119.99450 * 0.02562 * 15 14 13 42 42 H 1.09001 * 109.47173 * 299.73512 * 18 16 15 43 43 H 1.09003 * 109.46925 * 59.72407 * 18 16 15 44 44 H 1.08994 * 109.47111 * 299.99987 * 19 18 16 45 45 H 1.08993 * 109.46983 * 60.00319 * 19 18 16 46 46 H 1.07998 * 120.13761 * 0.29556 * 23 22 21 47 47 H 1.08003 * 119.79155 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.76450 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.05553 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.5642 1.1805 6 1 5.2613 1.6945 1.1721 7 6 3.5049 1.5203 2.3874 8 7 2.3546 0.8857 2.4689 9 14 4.2163 2.3618 3.8957 10 1 3.8294 3.7955 3.8914 11 1 3.6883 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3123 -1.2611 14 6 4.4930 -0.1679 -1.5523 15 7 5.2255 -0.2982 -2.8144 16 6 5.5630 -1.5191 -3.2748 17 8 5.2646 -2.5097 -2.6418 18 6 6.3160 -1.6531 -4.5733 19 6 6.5777 -3.1329 -4.8607 20 6 7.3312 -3.2668 -6.1589 21 7 8.6256 -3.2668 -6.2694 22 6 8.9535 -3.4086 -7.5822 23 6 10.1641 -3.4754 -8.2740 24 6 10.1610 -3.6204 -9.6431 25 6 8.9632 -3.6997 -10.3384 26 6 7.7598 -3.6352 -9.6680 27 6 7.7442 -3.4895 -8.2891 28 8 6.7610 -3.3974 -7.3670 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.8766 0.8547 3.3124 37 1 5.1903 1.8368 -1.1838 38 1 3.6492 1.7454 -2.0698 39 1 3.5407 -0.6924 -1.6296 40 1 5.0818 -0.6011 -0.7437 41 1 5.4683 0.4944 -3.3183 42 1 5.7242 -1.2249 -5.3823 43 1 7.2660 -1.1239 -4.4986 44 1 7.1695 -3.5610 -4.0517 45 1 5.6277 -3.6620 -4.9354 46 1 11.0994 -3.4142 -7.7374 47 1 11.0971 -3.6726 -10.1793 48 1 8.9732 -3.8130 -11.4124 49 1 6.8313 -3.6981 -10.2160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731874175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:54 Heat of formation + Delta-G solvation = -2.802006 kcal Electronic energy + Delta-G solvation = -28720.877333 eV Core-core repulsion = 24649.220527 eV Total energy + Delta-G solvation = -4071.656806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.32843 -40.77270 -38.99145 -38.34761 -36.14616 -35.84051 -34.54991 -33.73456 -33.14747 -31.64737 -30.64188 -29.46424 -27.35524 -26.77253 -24.89646 -24.14204 -23.18385 -22.57355 -22.34308 -21.85971 -21.21800 -19.08173 -18.79825 -18.45260 -18.08932 -17.71780 -16.96337 -16.86184 -16.67908 -16.39380 -15.86346 -15.50685 -15.23048 -15.07656 -14.91274 -14.72661 -14.71019 -14.14787 -14.09282 -13.92848 -13.59209 -13.43141 -13.40645 -13.14268 -13.00650 -12.79666 -12.63729 -12.55183 -12.38926 -12.35647 -12.24888 -12.17301 -11.80132 -11.68290 -11.53647 -11.53385 -11.11630 -10.96856 -10.31364 -10.00604 -9.83203 -9.48931 -8.84371 -7.78859 -5.10865 -0.36424 0.20488 1.28809 1.39057 1.49618 1.52697 1.58586 1.64383 2.19511 2.57219 2.64288 2.76167 3.29386 3.47101 3.60872 3.76080 3.86615 3.92247 4.05426 4.16363 4.21867 4.25498 4.29486 4.36176 4.43887 4.47280 4.54655 4.66257 4.72192 4.73666 4.80352 4.86486 4.93268 4.97472 5.05191 5.09239 5.16326 5.18394 5.30333 5.32641 5.37805 5.46561 5.49608 5.55065 5.66859 5.71131 5.89135 6.21075 6.37863 6.52089 6.60620 7.23255 7.30012 7.93963 8.32770 9.22069 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.001658 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.088077 B =16884.299806 C =17620.926773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.175 3.825 4 N -0.607 5.607 5 C -0.262 4.262 6 H 0.073 0.927 7 C -0.048 4.048 8 N -0.909 5.909 9 Si 0.953 3.047 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.278 1.278 13 C 0.144 3.856 14 C 0.110 3.890 15 N -0.711 5.711 16 C 0.510 3.490 17 O -0.589 6.589 18 C -0.121 4.121 19 C -0.010 4.010 20 C 0.254 3.746 21 N -0.503 5.503 22 C -0.013 4.013 23 C -0.080 4.080 24 C -0.110 4.110 25 C -0.083 4.083 26 C -0.102 4.102 27 C -0.020 4.020 28 O -0.222 6.222 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.245 0.755 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.417 0.583 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.143 0.857 47 H 0.172 0.828 48 H 0.179 0.821 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.266 -5.649 -28.859 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.328 5.328 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.243 4.243 8 N -0.555 5.555 9 Si 0.783 3.217 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.017 3.983 14 C -0.017 4.017 15 N -0.363 5.363 16 C 0.298 3.702 17 O -0.470 6.470 18 C -0.162 4.162 19 C -0.049 4.049 20 C 0.043 3.957 21 N -0.233 5.233 22 C -0.124 4.124 23 C -0.098 4.098 24 C -0.129 4.129 25 C -0.100 4.100 26 C -0.121 4.121 27 C -0.069 4.069 28 O -0.114 6.114 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.254 0.746 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.161 0.839 47 H 0.190 0.810 48 H 0.197 0.803 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.380 -6.256 -27.768 30.654 hybrid contribution -0.268 0.271 0.947 1.020 sum 11.112 -5.985 -26.821 29.642 Atomic orbital electron populations 1.21530 0.96170 1.00341 1.00622 1.22024 0.95033 0.99626 0.99390 1.20807 0.81629 0.94671 0.97892 1.44412 1.02318 1.83905 1.02194 1.19483 0.92356 1.42694 0.84677 0.90947 1.25347 0.98402 1.01043 0.99554 1.70332 1.18159 1.42107 1.24889 0.85491 0.77851 0.78676 0.79665 1.21506 1.22854 1.20303 1.21087 0.96968 0.91834 0.88397 1.22138 0.94609 1.00760 0.84156 1.45926 1.57452 1.08745 1.24219 1.20988 0.78964 0.82911 0.87385 1.90725 1.56728 1.38682 1.60820 1.21549 1.02993 0.96546 0.95082 1.19944 1.00627 0.98115 0.86196 1.26551 0.87637 0.94637 0.86902 1.70630 1.12634 1.21073 1.18941 1.20374 0.96269 1.06858 0.88871 1.20684 0.95047 0.99275 0.94836 1.21539 1.00523 0.98437 0.92359 1.21572 0.89963 0.96407 1.02097 1.20366 1.01678 1.02950 0.87067 1.20877 0.86214 1.06592 0.93261 1.84485 1.36515 1.73976 1.16394 0.92667 0.93630 0.94055 0.95808 0.92439 0.92210 0.95589 0.94493 0.92020 0.91066 0.93737 0.95306 0.74603 0.85657 0.86286 0.87095 0.87308 0.83930 0.81036 0.80323 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.91 71.98 0.71 -4.14 16 2 C -0.12 -5.46 5.60 30.60 0.17 -5.29 16 3 C 0.18 8.08 4.92 86.38 0.43 8.51 16 4 N -0.61 -28.54 2.54 -702.01 -1.78 -30.32 16 5 C -0.26 -13.83 9.70 84.03 0.81 -13.02 16 6 H 0.07 3.76 7.94 -2.91 -0.02 3.74 16 7 C -0.05 -2.59 4.89 84.86 0.41 -2.17 16 8 N -0.91 -50.83 8.62 21.65 0.19 -50.64 16 9 Si 0.95 44.45 29.62 68.60 2.03 46.48 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.14 5.24 5.82 86.38 0.50 5.74 16 14 C 0.11 4.05 5.88 86.38 0.51 4.56 16 15 N -0.71 -18.84 5.56 -463.07 -2.57 -21.41 16 16 C 0.51 14.05 7.83 87.66 0.69 14.74 16 17 O -0.59 -22.18 15.98 -3.03 -0.05 -22.23 16 18 C -0.12 -2.18 5.68 29.85 0.17 -2.01 16 19 C -0.01 -0.21 5.13 29.85 0.15 -0.06 16 20 C 0.25 5.86 7.49 88.39 0.66 6.52 16 21 N -0.50 -12.98 11.34 -296.27 -3.36 -16.34 16 22 C -0.01 -0.29 7.24 39.32 0.28 -0.01 16 23 C -0.08 -1.27 10.10 22.47 0.23 -1.04 16 24 C -0.11 -0.99 10.02 22.25 0.22 -0.76 16 25 C -0.08 -0.66 10.03 22.31 0.22 -0.43 16 26 C -0.10 -1.36 10.06 22.29 0.22 -1.14 16 27 C -0.02 -0.42 7.43 22.87 0.17 -0.25 16 28 O -0.22 -5.15 10.77 -9.92 -0.11 -5.25 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 1.03 5.98 -2.39 -0.01 1.02 16 33 H 0.06 3.09 6.33 -2.39 -0.02 3.08 16 34 H 0.06 3.14 5.85 -2.39 -0.01 3.12 16 35 H 0.03 1.07 7.98 -2.39 -0.02 1.05 16 36 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 37 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 38 H 0.07 2.20 7.95 -2.39 -0.02 2.18 16 39 H 0.04 1.84 5.92 -2.39 -0.01 1.83 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.42 7.61 8.47 -92.70 -0.79 6.82 16 42 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 45 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 46 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 48 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 49 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -73.69 403.50 1.10 -72.58 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.18 Total: 17.37 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.57 Total: 9.76 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -7.53 Total: -118.71 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.16 Total: -27.48 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -73.69 1.10 -72.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731874175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.783 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds