Wall clock time and date at job start Wed Apr 1 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 N 1.46503 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00075 * 270.00162 * 4 3 2 6 6 H 1.08001 * 120.00063 * 326.21535 * 5 4 3 7 7 C 1.38809 * 120.00146 * 146.21448 * 5 4 3 8 8 N 1.31620 * 120.00344 * 337.68306 * 7 5 4 9 9 Si 1.86800 * 119.99925 * 157.68193 * 7 5 4 10 10 H 1.48498 * 109.47301 * 90.00131 * 9 7 5 11 11 H 1.48504 * 109.47141 * 209.99890 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00061 * 9 7 5 13 13 C 1.46502 * 120.00102 * 89.99649 * 4 3 2 14 14 C 1.53004 * 109.47055 * 85.79072 * 13 4 3 15 15 N 1.46500 * 109.47330 * 180.02562 * 14 13 4 16 16 C 1.34773 * 119.99933 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99770 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46835 * 179.97438 * 18 16 15 20 20 H 1.09004 * 110.12881 * 306.58389 * 19 18 16 21 21 N 1.46734 * 110.10006 * 68.17420 * 19 18 16 22 22 C 1.34424 * 108.74939 * 119.19527 * 21 19 18 23 23 O 1.21546 * 124.85210 * 179.97438 * 22 21 19 24 24 C 1.47551 * 110.28769 * 359.97438 * 22 21 19 25 25 C 1.39622 * 132.33946 * 180.35469 * 24 22 21 26 26 C 1.37943 * 119.81917 * 180.15584 * 25 24 22 27 27 C 1.38376 * 120.32261 * 359.44999 * 26 25 24 28 28 C 1.38471 * 120.19278 * 0.28210 * 27 26 25 29 29 C 1.37573 * 119.95182 * 359.97438 * 28 27 26 30 30 H 1.09010 * 109.46752 * 300.00170 * 1 2 3 31 31 H 1.08994 * 109.47416 * 59.99798 * 1 2 3 32 32 H 1.08991 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46818 * 240.00486 * 2 1 3 34 34 H 1.08994 * 109.47739 * 119.99764 * 2 1 3 35 35 H 1.08994 * 109.47180 * 60.00413 * 3 2 1 36 36 H 1.09001 * 109.47156 * 299.99951 * 3 2 1 37 37 H 0.96992 * 120.00704 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47315 * 325.79053 * 13 4 3 39 39 H 1.08998 * 109.47254 * 205.78773 * 13 4 3 40 40 H 1.08995 * 109.46854 * 59.99718 * 14 13 4 41 41 H 1.09007 * 109.46997 * 299.99970 * 14 13 4 42 42 H 0.97002 * 119.99699 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47009 * 59.99453 * 18 16 15 44 44 H 1.08998 * 109.46986 * 299.99345 * 18 16 15 45 45 H 0.96998 * 125.62001 * 299.19767 * 21 19 18 46 46 H 1.07996 * 120.09458 * 359.90353 * 25 24 22 47 47 H 1.08002 * 119.83638 * 179.73030 * 26 25 24 48 48 H 1.08006 * 119.90515 * 180.25513 * 27 26 25 49 49 H 1.07996 * 120.02414 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4424 1.1850 6 1 3.7873 1.9623 2.0416 7 6 5.4025 0.7739 1.2859 8 7 5.6915 -0.1958 0.4441 9 14 6.6240 1.2506 2.6163 10 1 6.3633 0.4482 3.8383 11 1 8.0050 0.9885 2.1373 12 1 6.4749 2.6942 2.9310 13 6 4.2370 1.4427 -1.2697 14 6 4.4001 2.8814 -1.7642 15 7 5.1315 2.8815 -3.0335 16 6 5.3943 4.0457 -3.6597 17 8 5.0248 5.0931 -3.1726 18 6 6.1472 4.0459 -4.9652 19 6 6.3102 5.4845 -5.4597 20 1 5.3398 5.9796 -5.4997 21 7 7.2168 6.2229 -4.5731 22 6 8.2784 6.6353 -5.2871 23 8 9.2102 7.2749 -4.8399 24 6 8.1508 6.2004 -6.6913 25 6 8.9745 6.3677 -7.8062 26 6 8.5943 5.8448 -9.0247 27 6 7.4062 5.1456 -9.1447 28 6 6.5867 4.9707 -8.0424 29 6 6.9540 5.4927 -6.8237 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5137 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 6.5387 -0.6627 0.5144 38 1 3.6824 0.8650 -2.0091 39 1 5.2201 0.9956 -1.1221 40 1 4.9546 3.4590 -1.0248 41 1 3.4169 3.3285 -1.9118 42 1 5.4273 2.0438 -3.4229 43 1 5.5924 3.4684 -5.7046 44 1 7.1302 3.5985 -4.8177 45 1 7.0735 6.3864 -3.6278 46 1 9.9049 6.9086 -7.7157 47 1 9.2292 5.9779 -9.8882 48 1 7.1171 4.7355 -10.1011 49 1 5.6599 4.4249 -8.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753148891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:23 Heat of formation + Delta-G solvation = -24.793653 kcal Electronic energy + Delta-G solvation = -29475.255991 eV Core-core repulsion = 25402.645556 eV Total energy + Delta-G solvation = -4072.610435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.53993 -39.38534 -38.23479 -36.65128 -36.18686 -34.35495 -32.88345 -31.95728 -31.02247 -30.91033 -30.41191 -28.08576 -25.60718 -25.02856 -24.15245 -23.12793 -21.66423 -21.39494 -20.72010 -20.16974 -19.76679 -17.56654 -17.26404 -16.97729 -16.56575 -16.27448 -15.90135 -15.46798 -15.12568 -14.88963 -14.79836 -14.45488 -14.31735 -14.04990 -13.82631 -13.75365 -13.31138 -13.12763 -12.99860 -12.85048 -12.70890 -12.59935 -12.19833 -11.98613 -11.89369 -11.38878 -11.30881 -11.06674 -10.93327 -10.78126 -10.54893 -10.32934 -10.12475 -10.03761 -10.00161 -9.76899 -9.69000 -9.57937 -9.33793 -9.10892 -8.69177 -8.54554 -6.73589 -5.89854 -3.42140 0.44657 0.89691 2.57451 2.75922 3.04515 3.29625 3.35711 3.40341 3.44871 3.52193 3.80501 4.11478 4.42457 4.44083 4.56223 4.61136 4.84810 4.91340 5.03639 5.07255 5.23155 5.23651 5.28811 5.42564 5.52902 5.56745 5.70447 5.78438 5.85392 5.91690 5.99744 6.01510 6.08921 6.12103 6.23674 6.41210 6.43479 6.47353 6.57989 6.61807 6.64465 6.74887 6.89530 6.95608 7.00466 7.20119 7.51129 7.73795 7.77453 8.08068 8.38209 8.41805 9.08066 9.71565 10.26680 11.11802 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002321 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.962244 B =12062.006985 C =13349.777325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.135 3.865 14 C 0.097 3.903 15 N -0.716 5.716 16 C 0.507 3.493 17 O -0.550 6.550 18 C -0.149 4.149 19 C 0.188 3.812 20 H 0.113 0.887 21 N -0.705 5.705 22 C 0.557 3.443 23 O -0.531 6.531 24 C -0.154 4.154 25 C -0.048 4.048 26 C -0.127 4.127 27 C -0.089 4.089 28 C -0.100 4.100 29 C -0.078 4.078 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.255 0.745 38 H 0.026 0.974 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.399 0.601 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.432 0.568 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 5.888 -20.750 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.007 3.993 14 C -0.028 4.028 15 N -0.365 5.365 16 C 0.292 3.708 17 O -0.429 6.429 18 C -0.190 4.190 19 C 0.082 3.918 20 H 0.130 0.870 21 N -0.362 5.362 22 C 0.344 3.656 23 O -0.408 6.408 24 C -0.157 4.157 25 C -0.067 4.067 26 C -0.145 4.145 27 C -0.108 4.108 28 C -0.118 4.118 29 C -0.079 4.079 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.233 0.767 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.276 0.724 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.151 0.849 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.290 6.846 -20.157 21.290 hybrid contribution 0.689 -0.354 0.884 1.175 sum 0.979 6.492 -19.273 20.361 Atomic orbital electron populations 1.21758 0.97742 1.00341 1.00725 1.22070 0.93073 1.00766 1.02056 1.20971 0.85037 0.93536 0.98360 1.43704 0.99487 1.84883 1.01937 1.19089 1.02723 1.26441 0.90398 0.91844 1.25072 1.00608 0.95211 0.98159 1.69960 1.23516 1.20510 1.39160 0.86412 0.80790 0.78735 0.81582 1.21229 1.21466 1.20275 1.21079 1.01267 0.90328 0.86586 1.22401 0.94758 1.02963 0.82712 1.46118 1.57358 1.08273 1.24789 1.20408 0.79902 0.84353 0.86087 1.90689 1.53492 1.31321 1.67394 1.22059 1.02999 0.97152 0.96770 1.19761 0.94628 0.92142 0.85285 0.86970 1.45974 1.21519 1.55660 1.13080 1.18320 0.82025 0.79085 0.86150 1.90809 1.33807 1.40017 1.76185 1.20498 0.97205 1.02987 0.95007 1.20897 0.98532 0.96567 0.90695 1.21157 0.97310 0.98709 0.97338 1.21341 0.93915 0.96991 0.98503 1.20349 1.00565 1.00336 0.90577 1.20447 0.95398 0.97479 0.94619 0.93375 0.93675 0.93862 0.93119 0.91863 0.93815 0.94856 0.93535 0.95528 0.87662 0.91686 0.93192 0.76749 0.87206 0.87975 0.72414 0.84995 0.84986 0.84893 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.62 6.26 -26.73 -0.17 -2.79 16 3 C 0.15 2.95 5.69 -4.04 -0.02 2.93 16 4 N -0.58 -13.53 2.45 -173.23 -0.43 -13.96 16 5 C -0.26 -6.70 9.49 -15.06 -0.14 -6.84 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.24 4.93 -17.43 -0.09 0.16 16 8 N -0.89 -24.03 11.32 55.49 0.63 -23.41 16 9 Si 0.90 21.11 29.61 -169.99 -5.03 16.08 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.13 2.85 5.37 -4.04 -0.02 2.83 16 14 C 0.10 1.82 6.00 -4.04 -0.02 1.80 16 15 N -0.72 -10.48 5.56 -60.29 -0.33 -10.82 16 16 C 0.51 7.04 7.72 -10.98 -0.08 6.96 16 17 O -0.55 -9.50 14.95 5.56 0.08 -9.42 16 18 C -0.15 -1.41 5.40 -27.88 -0.15 -1.56 16 19 C 0.19 1.92 3.06 -68.89 -0.21 1.71 16 20 H 0.11 1.13 7.92 -51.93 -0.41 0.72 16 21 N -0.71 -9.00 5.73 -55.85 -0.32 -9.32 16 22 C 0.56 7.89 8.34 -12.62 -0.11 7.79 16 23 O -0.53 -9.40 18.04 5.33 0.10 -9.31 16 24 C -0.15 -1.72 6.26 -105.05 -0.66 -2.38 16 25 C -0.05 -0.44 10.10 -39.17 -0.40 -0.83 16 26 C -0.13 -0.84 10.02 -39.64 -0.40 -1.23 16 27 C -0.09 -0.52 10.05 -39.44 -0.40 -0.92 16 28 C -0.10 -0.67 10.03 -39.74 -0.40 -1.07 16 29 C -0.08 -0.71 5.67 -104.27 -0.59 -1.31 16 30 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.04 0.87 8.04 -51.93 -0.42 0.46 16 36 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.11 2.52 5.32 -51.93 -0.28 2.25 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.40 4.88 8.47 -40.82 -0.35 4.53 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.43 5.91 8.15 -40.82 -0.33 5.58 16 46 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 48 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 49 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -32.41 409.10 -10.30 -42.71 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.67 Total: 7.86 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -3.48 Total: 3.42 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.45 Total: -57.50 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.41 -10.30 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753148891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.911 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds