Wall clock time and date at job start Wed Apr 1 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 N 1.46503 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00075 * 270.00162 * 4 3 2 6 6 H 1.08001 * 120.00063 * 326.21535 * 5 4 3 7 7 C 1.38809 * 120.00146 * 146.21448 * 5 4 3 8 8 N 1.31620 * 120.00344 * 337.68306 * 7 5 4 9 9 Si 1.86800 * 119.99925 * 157.68193 * 7 5 4 10 10 H 1.48498 * 109.47301 * 90.00131 * 9 7 5 11 11 H 1.48504 * 109.47141 * 209.99890 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00061 * 9 7 5 13 13 C 1.46502 * 120.00102 * 89.99649 * 4 3 2 14 14 C 1.53004 * 109.47055 * 85.79072 * 13 4 3 15 15 N 1.46500 * 109.47330 * 180.02562 * 14 13 4 16 16 C 1.34773 * 119.99933 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99770 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46835 * 179.97438 * 18 16 15 20 20 H 1.09004 * 110.12881 * 306.58389 * 19 18 16 21 21 N 1.46734 * 110.10006 * 68.17420 * 19 18 16 22 22 C 1.34424 * 108.74939 * 119.19527 * 21 19 18 23 23 O 1.21546 * 124.85210 * 179.97438 * 22 21 19 24 24 C 1.47551 * 110.28769 * 359.97438 * 22 21 19 25 25 C 1.39622 * 132.33946 * 180.35469 * 24 22 21 26 26 C 1.37943 * 119.81917 * 180.15584 * 25 24 22 27 27 C 1.38376 * 120.32261 * 359.44999 * 26 25 24 28 28 C 1.38471 * 120.19278 * 0.28210 * 27 26 25 29 29 C 1.37573 * 119.95182 * 359.97438 * 28 27 26 30 30 H 1.09010 * 109.46752 * 300.00170 * 1 2 3 31 31 H 1.08994 * 109.47416 * 59.99798 * 1 2 3 32 32 H 1.08991 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46818 * 240.00486 * 2 1 3 34 34 H 1.08994 * 109.47739 * 119.99764 * 2 1 3 35 35 H 1.08994 * 109.47180 * 60.00413 * 3 2 1 36 36 H 1.09001 * 109.47156 * 299.99951 * 3 2 1 37 37 H 0.96992 * 120.00704 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47315 * 325.79053 * 13 4 3 39 39 H 1.08998 * 109.47254 * 205.78773 * 13 4 3 40 40 H 1.08995 * 109.46854 * 59.99718 * 14 13 4 41 41 H 1.09007 * 109.46997 * 299.99970 * 14 13 4 42 42 H 0.97002 * 119.99699 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47009 * 59.99453 * 18 16 15 44 44 H 1.08998 * 109.46986 * 299.99345 * 18 16 15 45 45 H 0.96998 * 125.62001 * 299.19767 * 21 19 18 46 46 H 1.07996 * 120.09458 * 359.90353 * 25 24 22 47 47 H 1.08002 * 119.83638 * 179.73030 * 26 25 24 48 48 H 1.08006 * 119.90515 * 180.25513 * 27 26 25 49 49 H 1.07996 * 120.02414 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4424 1.1850 6 1 3.7873 1.9623 2.0416 7 6 5.4025 0.7739 1.2859 8 7 5.6915 -0.1958 0.4441 9 14 6.6240 1.2506 2.6163 10 1 6.3633 0.4482 3.8383 11 1 8.0050 0.9885 2.1373 12 1 6.4749 2.6942 2.9310 13 6 4.2370 1.4427 -1.2697 14 6 4.4001 2.8814 -1.7642 15 7 5.1315 2.8815 -3.0335 16 6 5.3943 4.0457 -3.6597 17 8 5.0248 5.0931 -3.1726 18 6 6.1472 4.0459 -4.9652 19 6 6.3102 5.4845 -5.4597 20 1 5.3398 5.9796 -5.4997 21 7 7.2168 6.2229 -4.5731 22 6 8.2784 6.6353 -5.2871 23 8 9.2102 7.2749 -4.8399 24 6 8.1508 6.2004 -6.6913 25 6 8.9745 6.3677 -7.8062 26 6 8.5943 5.8448 -9.0247 27 6 7.4062 5.1456 -9.1447 28 6 6.5867 4.9707 -8.0424 29 6 6.9540 5.4927 -6.8237 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5137 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 6.5387 -0.6627 0.5144 38 1 3.6824 0.8650 -2.0091 39 1 5.2201 0.9956 -1.1221 40 1 4.9546 3.4590 -1.0248 41 1 3.4169 3.3285 -1.9118 42 1 5.4273 2.0438 -3.4229 43 1 5.5924 3.4684 -5.7046 44 1 7.1302 3.5985 -4.8177 45 1 7.0735 6.3864 -3.6278 46 1 9.9049 6.9086 -7.7157 47 1 9.2292 5.9779 -9.8882 48 1 7.1171 4.7355 -10.1011 49 1 5.6599 4.4249 -8.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753148891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:22 Heat of formation + Delta-G solvation = -46.371388 kcal Electronic energy + Delta-G solvation = -29476.191672 eV Core-core repulsion = 25402.645556 eV Total energy + Delta-G solvation = -4073.546116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38602 -40.56466 -39.08347 -38.25914 -37.22281 -35.72841 -34.56380 -32.94312 -32.48937 -31.61051 -31.34173 -29.53755 -27.33147 -26.07321 -24.87049 -24.56762 -23.02270 -22.33100 -21.71008 -21.53292 -21.04976 -18.83807 -18.46311 -17.95390 -17.78414 -17.21341 -16.93527 -16.81554 -16.58339 -16.20967 -15.89809 -15.72571 -15.47219 -15.21440 -14.94904 -14.80681 -14.63676 -14.38742 -14.15358 -13.99219 -13.75265 -13.63651 -13.43572 -13.06850 -12.89545 -12.75860 -12.65198 -12.56112 -12.49344 -12.17138 -12.06115 -12.01223 -11.80168 -11.72042 -11.32304 -11.15530 -10.94654 -10.55841 -10.53027 -10.02179 -9.95475 -9.79190 -8.64252 -7.88547 -5.43045 -0.24290 0.33903 1.40870 1.45970 1.53747 1.63714 1.71531 2.11166 2.19467 2.49642 2.83117 3.07249 3.21073 3.28041 3.64247 3.73253 3.91985 4.01816 4.18108 4.21351 4.27391 4.38188 4.39471 4.42569 4.46625 4.56953 4.60438 4.68859 4.72633 4.78664 4.80827 4.84276 4.97536 5.02492 5.17664 5.19609 5.25543 5.29759 5.39862 5.43021 5.47183 5.48279 5.61106 5.67005 5.72441 5.81336 5.83944 5.92752 6.42603 6.61106 7.02325 7.13125 7.27347 7.83444 8.32338 9.09262 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002321 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.962244 B =12062.006985 C =13349.777325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.598 5.598 5 C -0.265 4.265 6 H 0.053 0.947 7 C -0.031 4.031 8 N -0.908 5.908 9 Si 0.946 3.054 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.143 3.857 14 C 0.120 3.880 15 N -0.711 5.711 16 C 0.506 3.494 17 O -0.587 6.587 18 C -0.133 4.133 19 C 0.186 3.814 20 H 0.115 0.885 21 N -0.710 5.710 22 C 0.546 3.454 23 O -0.585 6.585 24 C -0.187 4.187 25 C -0.063 4.063 26 C -0.122 4.122 27 C -0.075 4.075 28 C -0.094 4.094 29 C -0.076 4.076 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.252 0.748 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.048 0.952 42 H 0.413 0.587 43 H 0.155 0.845 44 H 0.109 0.891 45 H 0.423 0.577 46 H 0.126 0.874 47 H 0.160 0.840 48 H 0.171 0.829 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 4.801 -24.290 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.319 5.319 5 C -0.395 4.395 6 H 0.071 0.929 7 C -0.228 4.228 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.016 3.984 14 C -0.007 4.007 15 N -0.363 5.363 16 C 0.294 3.706 17 O -0.468 6.468 18 C -0.173 4.173 19 C 0.081 3.919 20 H 0.132 0.868 21 N -0.364 5.364 22 C 0.335 3.665 23 O -0.467 6.467 24 C -0.190 4.190 25 C -0.082 4.082 26 C -0.140 4.140 27 C -0.093 4.093 28 C -0.112 4.112 29 C -0.077 4.077 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.249 0.751 43 H 0.173 0.827 44 H 0.127 0.873 45 H 0.264 0.736 46 H 0.144 0.856 47 H 0.178 0.822 48 H 0.189 0.811 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.197 5.728 -23.736 24.446 hybrid contribution 1.077 0.008 1.904 2.187 sum -0.120 5.736 -21.832 22.573 Atomic orbital electron populations 1.21667 0.94267 1.01701 1.01964 1.21908 0.96053 0.99098 0.99952 1.21093 0.83314 0.94579 0.99143 1.43940 1.00940 1.85158 1.01830 1.19222 1.03261 1.25803 0.91232 0.92884 1.25576 1.01778 0.95501 0.99986 1.70050 1.23601 1.21238 1.40366 0.85625 0.79008 0.78062 0.79838 1.20973 1.21633 1.20618 1.20937 0.99849 0.91452 0.86199 1.21803 0.94511 1.00615 0.83788 1.45950 1.57257 1.09575 1.23470 1.21179 0.79171 0.83186 0.87104 1.90682 1.54896 1.32578 1.68596 1.22047 1.03070 0.97332 0.94889 1.19909 0.94163 0.92145 0.85708 0.86788 1.46146 1.21792 1.55515 1.12955 1.18974 0.81425 0.78293 0.87793 1.90751 1.35841 1.42669 1.77488 1.20373 0.99395 1.05571 0.93647 1.21071 0.98423 0.97304 0.91377 1.21516 0.98070 0.97576 0.96840 1.21847 0.92689 0.95096 0.99703 1.20781 1.01714 0.99424 0.89309 1.20414 0.94358 0.98061 0.94903 0.92736 0.91820 0.92484 0.94009 0.95138 0.94197 0.92780 0.93822 0.94079 0.90250 0.95373 0.93371 0.75060 0.82697 0.87286 0.73576 0.85606 0.82216 0.81117 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.13 -4.80 6.26 30.59 0.19 -4.61 16 3 C 0.14 5.70 5.69 86.38 0.49 6.19 16 4 N -0.60 -28.19 2.45 -701.98 -1.72 -29.92 16 5 C -0.26 -14.11 9.49 84.03 0.80 -13.31 16 6 H 0.05 2.88 7.92 -2.91 -0.02 2.85 16 7 C -0.03 -1.65 4.93 84.86 0.42 -1.24 16 8 N -0.91 -49.93 11.32 21.65 0.25 -49.69 16 9 Si 0.95 44.30 29.61 68.60 2.03 46.33 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C 0.14 6.04 5.37 86.38 0.46 6.50 16 14 C 0.12 4.52 6.00 86.38 0.52 5.04 16 15 N -0.71 -20.17 5.56 -463.05 -2.57 -22.74 16 16 C 0.51 13.53 7.72 87.66 0.68 14.21 16 17 O -0.59 -20.40 14.95 -3.03 -0.05 -20.44 16 18 C -0.13 -2.19 5.40 29.85 0.16 -2.03 16 19 C 0.19 3.56 3.06 44.24 0.14 3.70 16 20 H 0.11 2.15 7.92 -2.39 -0.02 2.13 16 21 N -0.71 -18.94 5.73 -449.10 -2.57 -21.51 16 22 C 0.55 16.43 8.34 86.76 0.72 17.15 16 23 O -0.59 -22.56 18.04 -3.86 -0.07 -22.63 16 24 C -0.19 -4.14 6.26 -20.14 -0.13 -4.27 16 25 C -0.06 -1.09 10.10 22.53 0.23 -0.86 16 26 C -0.12 -1.19 10.02 22.23 0.22 -0.96 16 27 C -0.08 -0.49 10.05 22.36 0.22 -0.27 16 28 C -0.09 -0.81 10.03 22.17 0.22 -0.59 16 29 C -0.08 -1.22 5.67 -19.63 -0.11 -1.33 16 30 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 36 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 37 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 39 H 0.08 3.86 5.32 -2.39 -0.01 3.85 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.41 9.39 8.47 -92.71 -0.79 8.61 16 43 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.42 12.47 8.15 -92.71 -0.76 11.72 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 48 H 0.17 -0.09 8.06 -2.91 -0.02 -0.11 16 49 H 0.17 0.36 8.06 -2.91 -0.02 0.33 16 Total: -1.00 -75.63 409.10 0.67 -74.96 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.57 Total: 25.37 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 5.95 Total: 20.28 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.62 Total: -123.86 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.12 Total: -43.07 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -75.63 0.67 -74.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753148891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.591 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds