Wall clock time and date at job start Wed Apr 1 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47410 * 2 1 4 4 N 1.46498 * 109.47285 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99691 * 269.99996 * 4 3 2 6 6 H 1.08002 * 120.00240 * 38.13421 * 5 4 3 7 7 C 1.38822 * 119.99794 * 218.12927 * 5 4 3 8 8 N 1.31620 * 119.99689 * 21.28433 * 7 5 4 9 9 Si 1.86795 * 119.99918 * 201.27925 * 7 5 4 10 10 H 1.48505 * 109.46894 * 60.00456 * 9 7 5 11 11 H 1.48500 * 109.46907 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47505 * 300.00285 * 9 7 5 13 13 C 1.46499 * 120.00063 * 90.00027 * 4 3 2 14 14 C 1.53000 * 109.46925 * 264.50155 * 13 4 3 15 15 N 1.46499 * 109.46925 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99882 * 179.97438 * 15 14 13 17 17 O 1.21660 * 120.00539 * 0.02562 * 16 15 14 18 18 C 1.46923 * 119.99968 * 179.97438 * 16 15 14 19 19 C 1.35929 * 125.45699 * 180.02562 * 18 16 15 20 20 C 1.41428 * 107.75191 * 179.73619 * 19 18 16 21 21 C 1.40839 * 107.03640 * 0.36821 * 20 19 18 22 22 C 1.39162 * 119.55981 * 179.82696 * 21 20 19 23 23 C 1.37768 * 120.08256 * 359.76916 * 22 21 20 24 24 C 1.38748 * 120.72435 * 359.95636 * 23 22 21 25 25 C 1.38083 * 120.39780 * 0.04347 * 24 23 22 26 26 O 1.35770 * 120.19787 * 179.97438 * 25 24 23 27 27 C 1.42899 * 117.00267 * 0.02562 * 26 25 24 28 28 N 1.37525 * 107.37289 * 359.63615 * 21 20 19 29 29 H 0.97008 * 125.62739 * 180.20890 * 28 21 20 30 30 H 1.09004 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47219 * 299.99931 * 1 2 3 32 32 H 1.09001 * 109.46973 * 60.00194 * 1 2 3 33 33 H 1.09004 * 109.47427 * 239.99288 * 2 1 3 34 34 H 1.09001 * 109.46973 * 119.99806 * 2 1 3 35 35 H 1.09004 * 109.46764 * 59.99671 * 3 2 1 36 36 H 1.09001 * 109.46894 * 299.99854 * 3 2 1 37 37 H 0.96999 * 119.99659 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.46832 * 144.49994 * 13 4 3 39 39 H 1.08995 * 109.47266 * 24.50136 * 13 4 3 40 40 H 1.09001 * 109.47498 * 60.00246 * 14 13 4 41 41 H 1.09006 * 109.47467 * 299.99684 * 14 13 4 42 42 H 0.97002 * 120.00195 * 0.02562 * 15 14 13 43 43 H 1.08001 * 126.12644 * 359.96646 * 19 18 16 44 44 H 1.07996 * 119.95814 * 179.75115 * 22 21 20 45 45 H 1.08000 * 119.64211 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.80272 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46840 * 299.99603 * 27 26 25 48 48 H 1.09005 * 109.46788 * 180.02562 * 27 26 25 49 49 H 1.09000 * 109.46736 * 60.00067 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1891 1.4426 1.1868 6 1 3.8216 0.8652 2.0223 7 6 5.3551 2.1849 1.3155 8 7 5.5888 3.1900 0.4985 9 14 6.5922 1.7573 2.6482 10 1 7.0727 0.3662 2.4497 11 1 7.7423 2.6939 2.5748 12 1 5.9450 1.8722 3.9798 13 6 4.2381 1.4422 -1.2678 14 6 4.6129 0.0063 -1.6399 15 7 5.3454 0.0060 -2.9086 16 6 5.7797 -1.1559 -3.4357 17 8 5.5631 -2.2045 -2.8583 18 6 6.5139 -1.1562 -4.7084 19 6 7.0000 -2.2584 -5.3379 20 6 7.6321 -1.8312 -6.5288 21 6 7.5109 -0.4290 -6.5802 22 6 8.0527 0.2680 -7.6559 23 6 8.7069 -0.4116 -8.6601 24 6 8.8357 -1.7923 -8.6143 25 6 8.3076 -2.5087 -7.5586 26 8 8.4355 -3.8598 -7.5182 27 6 9.1303 -4.4784 -8.6029 28 7 6.8203 -0.0352 -5.4580 29 1 6.5868 0.8783 -5.2297 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.4034 3.7089 0.5886 38 1 5.1442 2.0390 -1.1638 39 1 3.6103 1.8683 -2.0503 40 1 3.7067 -0.5905 -1.7440 41 1 5.2408 -0.4198 -0.8574 42 1 5.5184 0.8422 -3.3690 43 1 6.9153 -3.2783 -4.9927 44 1 7.9600 1.3429 -7.7038 45 1 9.1243 0.1364 -9.4918 46 1 9.3518 -2.3099 -9.4094 47 1 8.6125 -4.2611 -9.5371 48 1 9.1606 -5.5568 -8.4470 49 1 10.1473 -4.0893 -8.6520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753150022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:41 Heat of formation + Delta-G solvation = -22.399773 kcal Electronic energy + Delta-G solvation = -29453.665802 eV Core-core repulsion = 25381.159174 eV Total energy + Delta-G solvation = -4072.506629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70000 -40.72808 -39.85180 -38.26979 -36.96512 -35.92143 -34.62679 -32.92471 -32.64099 -31.00959 -29.75751 -29.58758 -28.04573 -27.35719 -25.72641 -24.26871 -22.99481 -22.68586 -22.32761 -21.84324 -21.20109 -19.90841 -18.92536 -18.40042 -17.40133 -17.10190 -16.83691 -16.76435 -16.67725 -16.48401 -16.25237 -15.95898 -15.72818 -15.34706 -15.18033 -14.83484 -14.62157 -14.39155 -14.28607 -14.24141 -13.92459 -13.37785 -13.26716 -13.08289 -12.93062 -12.84069 -12.66733 -12.53383 -12.44645 -12.27128 -12.05121 -11.98328 -11.88936 -11.82325 -11.73552 -11.47462 -11.27187 -10.58939 -10.56440 -10.21865 -9.37079 -8.61008 -8.47824 -7.86620 -5.51883 -0.25739 0.55997 1.01923 1.42161 1.46170 1.51896 1.77721 2.00614 2.20957 2.38418 2.47909 2.83348 3.19432 3.55025 3.76032 3.83438 4.02518 4.05277 4.19679 4.22478 4.30119 4.35373 4.37863 4.44987 4.46598 4.49994 4.57324 4.66090 4.69616 4.74342 4.79073 4.84608 4.91777 4.98631 5.10946 5.20035 5.23373 5.27153 5.31685 5.39547 5.42734 5.50787 5.56513 5.61193 5.62603 5.72315 5.82918 6.31745 6.42780 6.46816 6.50048 6.99155 7.13419 7.80117 8.32282 9.07039 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.002323 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.685389 B =12048.566615 C =12855.481757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.595 5.595 5 C -0.270 4.270 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.142 3.858 14 C 0.120 3.880 15 N -0.705 5.705 16 C 0.579 3.421 17 O -0.571 6.571 18 C -0.001 4.001 19 C -0.100 4.100 20 C -0.174 4.174 21 C 0.146 3.854 22 C -0.178 4.178 23 C -0.038 4.038 24 C -0.247 4.247 25 C 0.170 3.830 26 O -0.336 6.336 27 C 0.018 3.982 28 N -0.564 5.564 29 H 0.433 0.567 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.032 0.968 42 H 0.408 0.592 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.167 0.833 46 H 0.157 0.843 47 H 0.071 0.929 48 H 0.114 0.886 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 -6.192 -23.178 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.316 5.316 5 C -0.401 4.401 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.015 3.985 14 C -0.006 4.006 15 N -0.356 5.356 16 C 0.366 3.634 17 O -0.451 6.451 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.179 4.179 21 C 0.034 3.966 22 C -0.199 4.199 23 C -0.058 4.058 24 C -0.267 4.267 25 C 0.123 3.877 26 O -0.249 6.249 27 C -0.076 4.076 28 N -0.171 5.171 29 H 0.274 0.726 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.244 0.756 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.184 0.816 46 H 0.174 0.826 47 H 0.090 0.910 48 H 0.132 0.868 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.938 -6.776 -22.449 23.964 hybrid contribution 0.764 0.374 0.966 1.287 sum 5.702 -6.402 -21.484 23.131 Atomic orbital electron populations 1.21653 0.94246 1.01771 1.02026 1.22037 0.96469 0.98789 1.00273 1.21068 0.83202 0.94456 0.99222 1.43813 1.00878 1.85302 1.01597 1.19102 1.06707 1.22174 0.92074 0.93143 1.25727 1.02050 0.94750 0.99887 1.70044 1.26284 1.17691 1.41074 0.85664 0.79243 0.77221 0.80282 1.21452 1.21378 1.19944 1.20954 0.98848 0.91830 0.86862 1.22017 0.94309 1.01415 0.82840 1.45807 1.56684 1.08601 1.24482 1.17469 0.78492 0.83981 0.83461 1.90809 1.59076 1.32721 1.62451 1.19788 1.08224 0.87951 0.95035 1.20843 0.99535 0.98104 0.94227 1.17615 1.09179 0.93307 0.97774 1.18352 0.96327 0.92381 0.89528 1.20325 1.05082 1.00938 0.93549 1.21071 0.94275 0.93066 0.97374 1.21258 1.09374 0.95840 1.00206 1.18705 0.93388 0.82633 0.92956 1.86033 1.73121 1.17584 1.48183 1.23398 0.96599 0.99166 0.88479 1.41855 1.48367 1.08564 1.18287 0.72595 0.92317 0.92577 0.92051 0.93579 0.94316 0.94224 0.93427 0.93686 0.90771 0.93116 0.92923 0.94915 0.75614 0.83817 0.83224 0.81601 0.82576 0.91045 0.86804 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.14 -4.85 6.26 30.59 0.19 -4.66 16 3 C 0.15 5.92 5.71 86.38 0.49 6.41 16 4 N -0.60 -28.58 2.43 -702.00 -1.71 -30.29 16 5 C -0.27 -14.56 9.42 84.04 0.79 -13.76 16 6 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 7 C -0.03 -1.40 5.00 84.86 0.42 -0.97 16 8 N -0.91 -50.31 11.43 21.65 0.25 -50.06 16 9 Si 0.95 44.50 29.60 68.60 2.03 46.53 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 C 0.14 6.20 5.50 86.38 0.47 6.67 16 14 C 0.12 4.96 5.97 86.38 0.52 5.48 16 15 N -0.71 -23.95 5.55 -466.85 -2.59 -26.54 16 16 C 0.58 21.10 7.79 86.52 0.67 21.78 16 17 O -0.57 -25.49 16.84 -4.22 -0.07 -25.56 16 18 C 0.00 -0.03 6.97 39.86 0.28 0.25 16 19 C -0.10 -3.11 10.52 22.52 0.24 -2.87 16 20 C -0.17 -4.71 6.11 -21.29 -0.13 -4.84 16 21 C 0.15 3.35 7.25 39.11 0.28 3.64 16 22 C -0.18 -2.92 10.06 22.38 0.23 -2.69 16 23 C -0.04 -0.51 10.01 22.28 0.22 -0.29 16 24 C -0.25 -3.88 9.03 22.35 0.20 -3.68 16 25 C 0.17 3.86 6.73 22.80 0.15 4.01 16 26 O -0.34 -7.37 10.50 -90.98 -0.95 -8.33 16 27 C 0.02 0.19 9.81 113.37 1.11 1.31 16 28 N -0.56 -13.07 6.08 -177.18 -1.08 -14.15 16 29 H 0.43 7.44 8.12 -92.70 -0.75 6.69 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.69 6.66 -2.38 -0.02 1.67 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.67 8.04 -2.38 -0.02 1.65 16 36 H 0.05 1.77 7.86 -2.39 -0.02 1.75 16 37 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 38 H 0.07 3.65 5.53 -2.39 -0.01 3.64 16 39 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 40 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 41 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.41 11.07 7.53 -92.71 -0.70 10.38 16 43 H 0.14 4.64 8.06 -2.91 -0.02 4.61 16 44 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.16 1.48 6.28 -2.91 -0.02 1.47 16 47 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 48 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.07 0.57 7.66 -2.39 -0.02 0.56 16 Total: -1.00 -71.87 404.87 2.27 -69.60 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.47 Total: 26.14 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.86 Total: 12.68 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -5.13 Total: -121.05 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.03 Total: -33.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -71.87 2.27 -69.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753150022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.196 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds