Wall clock time and date at job start Wed Apr 1 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 N 1.46503 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.34774 * 119.99931 * 274.21934 * 4 3 2 6 6 O 1.21362 * 120.00031 * 185.18442 * 5 4 3 7 7 C 1.49359 * 119.99886 * 5.17672 * 5 4 3 8 8 O 1.21372 * 119.99792 * 5.48808 * 7 5 4 9 9 N 1.34779 * 119.99575 * 185.48248 * 7 5 4 10 10 C 1.39722 * 119.99775 * 174.47423 * 9 7 5 11 11 C 1.38936 * 120.07545 * 327.10200 * 10 9 7 12 12 C 1.38097 * 119.92272 * 179.75026 * 11 10 9 13 13 C 1.38290 * 120.07664 * 0.54408 * 12 11 10 14 14 C 1.38298 * 120.15439 * 359.70527 * 13 12 11 15 15 C 1.38101 * 120.07266 * 0.02562 * 14 13 12 16 16 C 1.46497 * 120.00149 * 94.21993 * 4 3 2 17 17 H 1.09006 * 110.88250 * 356.11801 * 16 4 3 18 18 C 1.55152 * 111.00796 * 119.99898 * 16 4 3 19 19 C 1.54323 * 102.94341 * 153.57641 * 18 16 4 20 20 N 1.47018 * 107.27073 * 337.80610 * 19 18 16 21 21 C 1.36941 * 125.64746 * 178.96061 * 20 19 18 22 22 H 1.07993 * 119.99847 * 179.97438 * 21 20 19 23 23 C 1.38816 * 119.99838 * 359.97438 * 21 20 19 24 24 N 1.31623 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99796 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47132 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46827 * 119.99728 * 25 23 21 28 28 H 1.48491 * 109.47049 * 239.99989 * 25 23 21 29 29 C 1.47418 * 108.70513 * 358.94189 * 20 19 18 30 30 H 1.09006 * 109.46760 * 59.99703 * 1 2 3 31 31 H 1.08996 * 109.47208 * 300.00602 * 1 2 3 32 32 H 1.09000 * 109.47542 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47256 * 119.99916 * 2 1 3 34 34 H 1.08998 * 109.47528 * 240.00105 * 2 1 3 35 35 H 1.08996 * 109.47262 * 299.99885 * 3 2 1 36 36 H 1.08998 * 109.47074 * 59.99940 * 3 2 1 37 37 H 0.97000 * 120.00142 * 354.46997 * 9 7 5 38 38 H 1.08001 * 120.03625 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.96052 * 180.29303 * 12 11 10 40 40 H 1.07999 * 119.92487 * 179.72239 * 13 12 11 41 41 H 1.08001 * 119.96348 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.03247 * 180.02562 * 15 14 13 43 43 H 1.09003 * 110.71823 * 271.93960 * 18 16 4 44 44 H 1.09002 * 110.72099 * 35.03005 * 18 16 4 45 45 H 1.08999 * 109.88310 * 97.22831 * 19 18 16 46 46 H 1.09007 * 109.87986 * 218.23425 * 19 18 16 47 47 H 0.96999 * 119.99813 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.36974 * 265.28846 * 29 20 19 49 49 H 1.09000 * 110.36923 * 142.96472 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.3567 1.1649 6 8 5.3883 1.4512 1.1746 7 6 3.4356 1.1455 2.4434 8 8 2.2376 0.9517 2.4242 9 7 4.0957 1.1702 3.6182 10 6 3.3870 1.0884 4.8195 11 6 2.1170 1.6431 4.9179 12 6 1.4172 1.5559 6.1053 13 6 1.9837 0.9272 7.1990 14 6 3.2498 0.3784 7.1062 15 6 3.9529 0.4572 5.9202 16 6 4.2381 1.5356 -1.2643 17 1 3.5528 1.5288 -2.1120 18 6 5.1434 2.7953 -1.2911 19 6 6.2671 2.3927 -2.2693 20 7 6.3067 0.9235 -2.3077 21 6 7.1540 0.1678 -3.0733 22 1 7.1043 -0.9101 -3.0300 23 6 8.0768 0.7873 -3.9050 24 7 8.1369 2.1010 -3.9582 25 14 9.2331 -0.2437 -4.9488 26 1 8.9648 -1.6844 -4.7089 27 1 9.0144 0.0677 -6.3843 28 1 10.6386 0.0661 -4.5835 29 6 5.2835 0.3987 -1.3853 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 5.0628 1.2447 3.6297 38 1 1.6757 2.1380 4.0654 39 1 0.4281 1.9827 6.1809 40 1 1.4361 0.8643 8.1277 41 1 3.6891 -0.1122 7.9622 42 1 4.9414 0.0281 5.8484 43 1 4.5936 3.6573 -1.6690 44 1 5.5468 3.0014 -0.2997 45 1 6.0510 2.7839 -3.2634 46 1 7.2223 2.7825 -1.9172 47 1 8.7819 2.5339 -4.5391 48 1 5.7245 0.1838 -0.4120 49 1 4.8227 -0.4977 -1.8002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753316844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:07 Heat of formation + Delta-G solvation = 7.002845 kcal Electronic energy + Delta-G solvation = -30933.576642 eV Core-core repulsion = 26862.345007 eV Total energy + Delta-G solvation = -4071.231635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33595 -39.80335 -38.39459 -37.00355 -36.08388 -34.77965 -33.02070 -31.77636 -31.18948 -29.99291 -29.15012 -27.57397 -26.36198 -25.08886 -24.06160 -23.11990 -22.34426 -21.53098 -20.87541 -20.05525 -19.50975 -18.02518 -17.60390 -16.94790 -16.58099 -16.04489 -15.97075 -15.67637 -15.09698 -14.84455 -14.55292 -14.39543 -14.14172 -13.99416 -13.83120 -13.59536 -13.38683 -13.08788 -13.01043 -12.38531 -12.32937 -12.26060 -12.01984 -11.84479 -11.76281 -11.56084 -11.36632 -11.13932 -10.88924 -10.88185 -10.80118 -10.67576 -10.38274 -10.21543 -10.03275 -9.83287 -9.64299 -9.25459 -9.09002 -8.62483 -8.46552 -8.38294 -6.75225 -5.66302 -2.99206 0.83111 1.13201 1.56449 2.23594 3.13992 3.36119 3.42998 3.48446 3.50865 3.58069 4.18145 4.54897 4.63063 4.68192 4.88667 4.95336 5.04767 5.12891 5.23979 5.27384 5.32882 5.37970 5.40316 5.47751 5.59792 5.70612 5.73738 5.76028 5.78774 5.85832 5.97893 6.00364 6.02859 6.10064 6.17312 6.24796 6.27314 6.38857 6.45053 6.52674 6.56859 6.68238 6.72314 6.90771 7.09766 7.33204 7.60506 7.61957 7.69901 7.87808 8.02498 8.30648 9.26919 9.86985 10.53263 11.45499 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.002644 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.120878 B =10585.653248 C =11553.611121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.106 3.894 4 N -0.569 5.569 5 C 0.501 3.499 6 O -0.496 6.496 7 C 0.506 3.494 8 O -0.491 6.491 9 N -0.649 5.649 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.101 4.101 13 C -0.137 4.137 14 C -0.100 4.100 15 C -0.143 4.143 16 C 0.127 3.873 17 H 0.099 0.901 18 C -0.155 4.155 19 C 0.185 3.815 20 N -0.601 5.601 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.127 3.873 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.424 0.576 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.251 0.749 48 H 0.042 0.958 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 -0.093 19.511 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.017 4.017 4 N -0.302 5.302 5 C 0.282 3.718 6 O -0.370 6.370 7 C 0.289 3.711 8 O -0.365 6.365 9 N -0.296 5.296 10 C 0.054 3.946 11 C -0.141 4.141 12 C -0.119 4.119 13 C -0.156 4.156 14 C -0.119 4.119 15 C -0.163 4.163 16 C 0.024 3.976 17 H 0.117 0.883 18 C -0.194 4.194 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.743 3.257 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.000 4.000 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.262 0.738 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.272 -0.122 19.233 25.193 hybrid contribution 1.083 -0.512 -0.612 1.346 sum -15.189 -0.635 18.620 24.038 Atomic orbital electron populations 1.21611 0.95317 1.01515 1.01572 1.21868 0.96090 0.96815 1.02476 1.22025 0.77999 0.98045 1.03616 1.47854 1.07398 1.69351 1.05551 1.19729 0.87550 0.80058 0.84462 1.90839 1.13009 1.47165 1.86031 1.20629 0.87725 0.77400 0.85307 1.90726 1.14230 1.44731 1.86809 1.43256 1.11987 1.70877 1.03491 1.17770 0.93448 0.97974 0.85388 1.21176 0.94171 0.99965 0.98815 1.21042 0.99712 0.98760 0.92403 1.21161 0.95823 0.99786 0.98826 1.20955 0.94685 0.99206 0.97064 1.20965 1.01444 1.00895 0.93046 1.22637 0.93607 0.98744 0.82590 0.88324 1.23276 0.98274 0.95603 1.02219 1.21062 0.93956 0.83788 0.95218 1.44320 1.38779 1.01881 1.47782 1.19090 1.10287 0.89767 1.16021 0.90465 1.24797 0.99676 0.95865 1.00242 1.69977 1.38315 1.06802 1.41909 0.86037 0.80689 0.79087 0.79922 1.20553 1.21810 1.21784 1.21834 0.89486 0.93516 0.95136 0.93018 0.92456 0.92909 0.91112 0.92155 0.90667 0.88593 0.73827 0.84711 0.85678 0.85986 0.85601 0.85427 0.92421 0.90670 0.93630 0.93807 0.93857 0.94053 0.94704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.91 37.15 0.37 -1.01 16 2 C -0.13 -1.58 5.68 -26.73 -0.15 -1.73 16 3 C 0.11 1.27 4.95 -4.04 -0.02 1.25 16 4 N -0.57 -8.54 2.57 -164.21 -0.42 -8.96 16 5 C 0.50 7.79 6.97 -11.63 -0.08 7.71 16 6 O -0.50 -9.17 12.55 5.49 0.07 -9.10 16 7 C 0.51 6.65 7.38 -11.63 -0.09 6.56 16 8 O -0.49 -6.45 9.07 5.48 0.05 -6.41 16 9 N -0.65 -7.36 5.33 -10.29 -0.05 -7.42 16 10 C 0.15 1.58 6.28 -83.75 -0.53 1.06 16 11 C -0.12 -1.27 8.66 -39.37 -0.34 -1.61 16 12 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 13 C -0.14 -1.05 10.04 -39.54 -0.40 -1.45 16 14 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 15 C -0.14 -1.29 9.96 -39.38 -0.39 -1.68 16 16 C 0.13 2.28 3.54 -65.78 -0.23 2.05 16 17 H 0.10 1.65 7.86 -51.93 -0.41 1.25 16 18 C -0.15 -3.05 6.32 -24.90 -0.16 -3.21 16 19 C 0.18 4.65 5.37 -3.07 -0.02 4.63 16 20 N -0.60 -15.90 3.39 -170.07 -0.58 -16.47 16 21 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.62 10.31 55.49 0.57 -27.04 16 25 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 C 0.13 2.79 6.58 -2.53 -0.02 2.77 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.94 6.45 -51.93 -0.34 0.60 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 36 H 0.10 1.12 5.84 -51.93 -0.30 0.82 16 37 H 0.42 4.40 8.29 -40.82 -0.34 4.06 16 38 H 0.14 1.48 6.39 -52.49 -0.34 1.15 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.54 6.08 -51.93 -0.32 1.22 16 45 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 46 H 0.04 1.24 7.51 -51.93 -0.39 0.85 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.04 0.97 5.72 -51.93 -0.30 0.67 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -32.67 388.24 -9.92 -42.59 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.29 Total: 3.48 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -3.10 Total: 5.96 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.48 Total: -59.90 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.12 Total: -15.51 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.67 -9.92 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753316844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.596 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds