Wall clock time and date at job start Wed Apr 1 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 N 1.46503 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.34774 * 119.99931 * 274.21934 * 4 3 2 6 6 O 1.21362 * 120.00031 * 185.18442 * 5 4 3 7 7 C 1.49359 * 119.99886 * 5.17672 * 5 4 3 8 8 O 1.21372 * 119.99792 * 5.48808 * 7 5 4 9 9 N 1.34779 * 119.99575 * 185.48248 * 7 5 4 10 10 C 1.39722 * 119.99775 * 174.47423 * 9 7 5 11 11 C 1.38936 * 120.07545 * 327.10200 * 10 9 7 12 12 C 1.38097 * 119.92272 * 179.75026 * 11 10 9 13 13 C 1.38290 * 120.07664 * 0.54408 * 12 11 10 14 14 C 1.38298 * 120.15439 * 359.70527 * 13 12 11 15 15 C 1.38101 * 120.07266 * 0.02562 * 14 13 12 16 16 C 1.46497 * 120.00149 * 94.21993 * 4 3 2 17 17 H 1.09006 * 110.88250 * 356.11801 * 16 4 3 18 18 C 1.55152 * 111.00796 * 119.99898 * 16 4 3 19 19 C 1.54323 * 102.94341 * 153.57641 * 18 16 4 20 20 N 1.47018 * 107.27073 * 337.80610 * 19 18 16 21 21 C 1.36941 * 125.64746 * 178.96061 * 20 19 18 22 22 H 1.07993 * 119.99847 * 179.97438 * 21 20 19 23 23 C 1.38816 * 119.99838 * 359.97438 * 21 20 19 24 24 N 1.31623 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99796 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47132 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46827 * 119.99728 * 25 23 21 28 28 H 1.48491 * 109.47049 * 239.99989 * 25 23 21 29 29 C 1.47418 * 108.70513 * 358.94189 * 20 19 18 30 30 H 1.09006 * 109.46760 * 59.99703 * 1 2 3 31 31 H 1.08996 * 109.47208 * 300.00602 * 1 2 3 32 32 H 1.09000 * 109.47542 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47256 * 119.99916 * 2 1 3 34 34 H 1.08998 * 109.47528 * 240.00105 * 2 1 3 35 35 H 1.08996 * 109.47262 * 299.99885 * 3 2 1 36 36 H 1.08998 * 109.47074 * 59.99940 * 3 2 1 37 37 H 0.97000 * 120.00142 * 354.46997 * 9 7 5 38 38 H 1.08001 * 120.03625 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.96052 * 180.29303 * 12 11 10 40 40 H 1.07999 * 119.92487 * 179.72239 * 13 12 11 41 41 H 1.08001 * 119.96348 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.03247 * 180.02562 * 15 14 13 43 43 H 1.09003 * 110.71823 * 271.93960 * 18 16 4 44 44 H 1.09002 * 110.72099 * 35.03005 * 18 16 4 45 45 H 1.08999 * 109.88310 * 97.22831 * 19 18 16 46 46 H 1.09007 * 109.87986 * 218.23425 * 19 18 16 47 47 H 0.96999 * 119.99813 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.36974 * 265.28846 * 29 20 19 49 49 H 1.09000 * 110.36923 * 142.96472 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.3567 1.1649 6 8 5.3883 1.4512 1.1746 7 6 3.4356 1.1455 2.4434 8 8 2.2376 0.9517 2.4242 9 7 4.0957 1.1702 3.6182 10 6 3.3870 1.0884 4.8195 11 6 2.1170 1.6431 4.9179 12 6 1.4172 1.5559 6.1053 13 6 1.9837 0.9272 7.1990 14 6 3.2498 0.3784 7.1062 15 6 3.9529 0.4572 5.9202 16 6 4.2381 1.5356 -1.2643 17 1 3.5528 1.5288 -2.1120 18 6 5.1434 2.7953 -1.2911 19 6 6.2671 2.3927 -2.2693 20 7 6.3067 0.9235 -2.3077 21 6 7.1540 0.1678 -3.0733 22 1 7.1043 -0.9101 -3.0300 23 6 8.0768 0.7873 -3.9050 24 7 8.1369 2.1010 -3.9582 25 14 9.2331 -0.2437 -4.9488 26 1 8.9648 -1.6844 -4.7089 27 1 9.0144 0.0677 -6.3843 28 1 10.6386 0.0661 -4.5835 29 6 5.2835 0.3987 -1.3853 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 5.0628 1.2447 3.6297 38 1 1.6757 2.1380 4.0654 39 1 0.4281 1.9827 6.1809 40 1 1.4361 0.8643 8.1277 41 1 3.6891 -0.1122 7.9622 42 1 4.9414 0.0281 5.8484 43 1 4.5936 3.6573 -1.6690 44 1 5.5468 3.0014 -0.2997 45 1 6.0510 2.7839 -3.2634 46 1 7.2223 2.7825 -1.9172 47 1 8.7819 2.5339 -4.5391 48 1 5.7245 0.1838 -0.4120 49 1 4.8227 -0.4977 -1.8002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753316844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:06 Heat of formation + Delta-G solvation = -12.340929 kcal Electronic energy + Delta-G solvation = -30934.415451 eV Core-core repulsion = 26862.345007 eV Total energy + Delta-G solvation = -4072.070444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.41654 -40.86164 -39.36784 -38.51075 -37.38665 -35.71999 -34.59420 -33.33919 -31.84490 -31.12075 -30.70844 -29.26220 -27.36915 -26.80776 -25.42018 -23.90751 -23.34021 -22.48975 -22.07115 -22.00375 -20.66467 -19.15798 -18.79623 -18.57910 -17.53271 -17.17612 -17.12838 -16.79100 -16.67580 -16.23886 -15.75304 -15.69463 -15.25338 -15.05175 -14.85477 -14.63631 -14.55803 -14.27659 -14.18057 -13.83075 -13.79223 -13.70933 -13.26410 -13.03666 -12.89861 -12.82467 -12.57192 -12.49321 -12.34901 -12.20452 -12.06595 -11.99652 -11.96879 -11.79651 -11.70549 -11.42053 -11.21627 -10.73067 -10.39796 -9.86017 -9.82254 -9.17451 -8.88623 -7.85821 -5.21902 -0.05693 0.47099 0.62911 1.14476 1.44802 1.46550 1.56865 2.02047 2.27745 2.50319 2.88795 3.13187 3.32703 3.66302 3.84359 3.90588 3.99259 4.03532 4.06436 4.18890 4.21444 4.32132 4.41621 4.47221 4.53503 4.54794 4.57105 4.65939 4.71260 4.81196 4.86313 4.92324 5.00245 5.00935 5.11299 5.20188 5.28224 5.30134 5.32267 5.42315 5.46020 5.55410 5.57456 5.62803 5.64505 5.72954 5.90585 6.07323 6.17574 6.18866 6.59422 6.84228 7.08559 7.74540 8.39718 9.24836 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.002644 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.120878 B =10585.653248 C =11553.611121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.105 3.895 4 N -0.565 5.565 5 C 0.498 3.502 6 O -0.532 6.532 7 C 0.512 3.488 8 O -0.492 6.492 9 N -0.641 5.641 10 C 0.123 3.877 11 C -0.137 4.137 12 C -0.106 4.106 13 C -0.134 4.134 14 C -0.102 4.102 15 C -0.149 4.149 16 C 0.147 3.853 17 H 0.120 0.880 18 C -0.139 4.139 19 C 0.195 3.805 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.981 3.019 26 H -0.266 1.266 27 H -0.288 1.288 28 H -0.293 1.293 29 C 0.125 3.875 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.426 0.574 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.000 1.000 47 H 0.248 0.752 48 H 0.027 0.973 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.381 -0.826 21.003 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C -0.016 4.016 4 N -0.297 5.297 5 C 0.280 3.720 6 O -0.409 6.409 7 C 0.294 3.706 8 O -0.366 6.366 9 N -0.288 5.288 10 C 0.029 3.971 11 C -0.158 4.158 12 C -0.124 4.124 13 C -0.152 4.152 14 C -0.120 4.120 15 C -0.169 4.169 16 C 0.043 3.957 17 H 0.138 0.862 18 C -0.178 4.178 19 C 0.069 3.931 20 N -0.348 5.348 21 C -0.370 4.370 22 H 0.098 0.902 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.809 3.191 26 H -0.191 1.191 27 H -0.215 1.215 28 H -0.220 1.220 29 C -0.001 4.001 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.264 0.736 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.018 0.982 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.444 -0.873 20.772 27.793 hybrid contribution 1.722 -0.313 -0.931 1.982 sum -16.723 -1.186 19.841 25.975 Atomic orbital electron populations 1.21563 0.93478 1.02050 1.02312 1.21811 0.97608 0.96203 1.01210 1.22248 0.75757 0.98603 1.05000 1.47852 1.08561 1.68910 1.04361 1.20214 0.87271 0.79019 0.85457 1.90824 1.14645 1.48683 1.86710 1.20064 0.87511 0.78104 0.84922 1.90722 1.13950 1.45236 1.86704 1.43174 1.12106 1.70124 1.03379 1.17994 0.93988 0.99692 0.85388 1.21231 0.94416 1.00660 0.99449 1.21323 1.00468 0.98672 0.91962 1.21546 0.95811 0.98365 0.99505 1.21330 0.94728 0.98697 0.97282 1.21201 1.02104 1.00601 0.93026 1.22297 0.93120 0.95549 0.84751 0.86188 1.23068 0.97006 0.97478 1.00261 1.20783 0.93912 0.83328 0.95043 1.44608 1.39603 1.02488 1.48079 1.19466 1.10958 0.90317 1.16307 0.90189 1.25682 1.01409 0.97098 1.01740 1.70197 1.38889 1.08376 1.42548 0.84969 0.77992 0.78175 0.77934 1.19066 1.21452 1.22012 1.21900 0.89590 0.95217 0.93380 0.91669 0.92280 0.92533 0.92881 0.92914 0.88547 0.87919 0.73590 0.85795 0.83786 0.83259 0.83027 0.84365 0.89482 0.91461 0.96145 0.98195 0.94316 0.95485 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.13 -2.85 5.68 30.59 0.17 -2.67 16 3 C 0.10 2.31 4.95 86.38 0.43 2.74 16 4 N -0.57 -16.44 2.57 -791.80 -2.03 -18.47 16 5 C 0.50 15.53 6.97 87.24 0.61 16.13 16 6 O -0.53 -20.21 12.55 -3.28 -0.04 -20.25 16 7 C 0.51 13.36 7.38 87.24 0.64 14.01 16 8 O -0.49 -12.60 9.07 -3.32 -0.03 -12.63 16 9 N -0.64 -14.58 5.33 -304.83 -1.62 -16.20 16 10 C 0.12 2.54 6.28 38.22 0.24 2.78 16 11 C -0.14 -2.76 8.66 22.40 0.19 -2.56 16 12 C -0.11 -1.60 10.04 22.25 0.22 -1.38 16 13 C -0.13 -1.67 10.04 22.30 0.22 -1.45 16 14 C -0.10 -1.33 10.04 22.25 0.22 -1.11 16 15 C -0.15 -2.49 9.96 22.40 0.22 -2.26 16 16 C 0.15 5.15 3.54 46.38 0.16 5.31 16 17 H 0.12 3.76 7.86 -2.38 -0.02 3.74 16 18 C -0.14 -5.50 6.32 31.78 0.20 -5.29 16 19 C 0.19 10.16 5.37 86.73 0.47 10.63 16 20 N -0.62 -33.77 3.39 -691.99 -2.35 -36.12 16 21 C -0.24 -14.15 10.28 84.03 0.86 -13.28 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 24 N -0.95 -58.89 10.31 21.65 0.22 -58.67 16 25 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 C 0.13 5.55 6.58 86.86 0.57 6.12 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 1.36 6.45 -2.39 -0.02 1.34 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.76 7.90 -2.39 -0.02 1.74 16 36 H 0.10 2.21 5.84 -2.39 -0.01 2.19 16 37 H 0.43 9.07 8.29 -92.71 -0.77 8.30 16 38 H 0.12 2.68 6.39 -2.91 -0.02 2.67 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.07 2.79 6.08 -2.39 -0.01 2.78 16 45 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 46 H 0.00 -0.01 7.51 -2.38 -0.02 -0.03 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.03 1.30 5.72 -2.39 -0.01 1.29 16 49 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -73.31 388.24 3.00 -70.31 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.20 Total: 20.27 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 6.63 Total: 22.66 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -5.78 Total: -129.47 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.07 Total: -32.88 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -73.31 3.00 -70.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753316844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.974 kcal (2) G-P(sol) polarization free energy of solvation -73.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds