Wall clock time and date at job start Wed Apr 1 2020 03:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46778 * 2 1 4 4 N 1.46505 * 109.46783 * 173.79953 * 3 2 1 5 5 C 1.34784 * 119.99962 * 254.67938 * 4 3 2 6 6 O 1.21521 * 120.00229 * 182.33487 * 5 4 3 7 7 C 1.48035 * 119.99539 * 2.33930 * 5 4 3 8 8 C 1.39547 * 120.00521 * 38.47782 * 7 5 4 9 9 C 1.37820 * 120.00376 * 179.71909 * 8 7 5 10 10 C 1.39560 * 119.99508 * 0.55157 * 9 8 7 11 11 C 1.48037 * 119.99698 * 179.74471 * 10 9 8 12 12 N 1.34775 * 120.00316 * 359.97438 * 11 10 9 13 13 O 1.21533 * 119.99859 * 179.97438 * 11 10 9 14 14 C 1.39559 * 120.00165 * 359.72290 * 10 9 8 15 15 C 1.37818 * 119.99705 * 359.97438 * 14 10 9 16 16 C 1.46496 * 120.00213 * 74.68325 * 4 3 2 17 17 H 1.08996 * 110.88463 * 2.42638 * 16 4 3 18 18 C 1.55160 * 111.00619 * 126.35011 * 16 4 3 19 19 C 1.54319 * 102.94203 * 153.57516 * 18 16 4 20 20 N 1.47022 * 107.27339 * 337.80988 * 19 18 16 21 21 C 1.36936 * 125.64825 * 178.90781 * 20 19 18 22 22 H 1.08002 * 119.99788 * 174.97894 * 21 20 19 23 23 C 1.38813 * 120.00213 * 354.97946 * 21 20 19 24 24 N 1.31616 * 119.99945 * 5.62438 * 23 21 20 25 25 Si 1.86797 * 119.99947 * 185.62840 * 23 21 20 26 26 H 1.48507 * 109.47410 * 94.99620 * 25 23 21 27 27 H 1.48505 * 109.47106 * 214.99185 * 25 23 21 28 28 H 1.48502 * 109.47352 * 334.99353 * 25 23 21 29 29 C 1.47429 * 108.70164 * 358.93550 * 20 19 18 30 30 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46937 * 300.00125 * 1 2 3 32 32 H 1.08999 * 109.47031 * 60.00439 * 1 2 3 33 33 H 1.08995 * 109.46937 * 239.99875 * 2 1 3 34 34 H 1.08997 * 109.46826 * 120.00312 * 2 1 3 35 35 H 1.09002 * 109.47745 * 53.80226 * 3 2 1 36 36 H 1.08996 * 109.47497 * 293.79417 * 3 2 1 37 37 H 1.08005 * 119.99923 * 359.97438 * 8 7 5 38 38 H 1.08005 * 120.00261 * 180.30101 * 9 8 7 39 39 H 0.97006 * 119.99971 * 359.97438 * 12 11 10 40 40 H 0.96996 * 120.00253 * 180.02562 * 12 11 10 41 41 H 1.07994 * 119.99898 * 179.97438 * 14 10 9 42 42 H 1.07994 * 119.99831 * 180.02562 * 15 14 10 43 43 H 1.08997 * 110.71554 * 35.21184 * 18 16 4 44 44 H 1.09004 * 110.71819 * 271.94011 * 18 16 4 45 45 H 1.08998 * 109.88374 * 218.38498 * 19 18 16 46 46 H 1.09003 * 109.88444 * 97.22695 * 19 18 16 47 47 H 0.96995 * 120.00259 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.36107 * 142.96942 * 29 20 19 49 49 H 1.08995 * 110.36665 * 265.18236 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4974 1.4451 0.1492 5 6 4.0537 1.7951 1.3259 6 8 5.2630 1.8384 1.4373 7 6 3.1915 2.1267 2.4827 8 6 2.0224 1.4001 2.7126 9 6 1.2227 1.7050 3.7928 10 6 1.5761 2.7480 4.6502 11 6 0.7142 3.0792 5.8073 12 7 -0.4121 2.3739 6.0324 13 8 1.0221 3.9871 6.5542 14 6 2.7422 3.4783 4.4170 15 6 3.5451 3.1693 3.3403 16 6 4.3501 1.0675 -0.9806 17 1 3.7507 0.8550 -1.8658 18 6 5.4050 2.1671 -1.2732 19 6 6.5548 1.3765 -1.9321 20 7 6.4130 -0.0270 -1.5177 21 6 7.2253 -1.0593 -1.9047 22 1 7.0872 -2.0431 -1.4809 23 6 8.2261 -0.8414 -2.8415 24 7 8.4672 0.3776 -3.2755 25 14 9.2307 -2.2781 -3.4865 26 1 8.6372 -2.7663 -4.7573 27 1 10.6272 -1.8359 -3.7302 28 1 9.2263 -3.3745 -2.4848 29 6 5.2511 -0.1390 -0.6172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.5889 1.9874 0.8293 36 1 1.7702 1.9232 -0.9403 37 1 1.7465 0.5961 2.0463 38 1 0.3205 1.1395 3.9735 39 1 -0.6581 1.6495 5.4361 40 1 -0.9770 2.5912 6.7904 41 1 3.0154 4.2856 5.0802 42 1 4.4477 3.7342 3.1601 43 1 5.7399 2.6360 -0.3479 44 1 5.0050 2.9119 -1.9614 45 1 7.5146 1.7675 -1.5946 46 1 6.4824 1.4518 -3.0171 47 1 9.1663 0.5299 -3.9304 48 1 4.7219 -1.0750 -0.7955 49 1 5.5701 -0.0766 0.4232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753322294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:57 Heat of formation + Delta-G solvation = -1.501928 kcal Electronic energy + Delta-G solvation = -30776.066841 eV Core-core repulsion = 26704.466411 eV Total energy + Delta-G solvation = -4071.600430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94958 -39.98424 -38.23604 -36.77936 -36.15289 -34.29250 -33.13520 -32.10729 -31.29672 -31.20464 -29.06213 -27.42985 -26.38440 -25.13780 -24.12658 -23.04709 -21.99399 -21.50114 -20.89985 -20.01412 -19.19075 -18.54665 -17.39186 -17.17712 -16.82966 -16.25908 -15.50922 -15.33797 -15.18538 -15.01693 -14.98612 -14.55675 -14.31468 -14.01192 -13.85056 -13.61701 -13.38987 -13.16250 -12.82591 -12.76144 -12.37665 -12.25267 -12.22610 -11.87302 -11.67963 -11.55098 -11.35820 -10.97432 -10.88164 -10.81839 -10.65390 -10.52317 -10.32955 -10.17242 -10.04357 -9.91789 -9.64978 -9.39860 -9.29610 -9.08375 -8.54958 -8.37257 -6.72721 -5.64870 -2.97182 0.23169 0.98062 2.27248 2.91933 3.00350 3.04227 3.43782 3.48700 3.51224 3.54612 4.20710 4.35117 4.44481 4.54363 4.58197 4.66340 4.76472 4.91806 5.00940 5.07675 5.18786 5.30367 5.39293 5.41835 5.47024 5.55139 5.59876 5.60830 5.76542 5.78349 5.81528 5.82807 5.89742 5.91015 5.99500 6.12767 6.24040 6.30503 6.43124 6.51973 6.60359 6.66209 6.76689 6.85297 7.16866 7.52414 7.64359 7.75313 7.79699 7.90737 8.28749 8.33996 9.28847 9.89313 10.56557 11.46959 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002517 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.908429 B =11123.763532 C =11818.476906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.094 3.906 4 N -0.595 5.595 5 C 0.547 3.453 6 O -0.503 6.503 7 C -0.092 4.092 8 C -0.113 4.113 9 C -0.094 4.094 10 C -0.127 4.127 11 C 0.564 3.436 12 N -0.851 5.851 13 O -0.538 6.538 14 C -0.064 4.064 15 C -0.075 4.075 16 C 0.132 3.868 17 H 0.093 0.907 18 C -0.159 4.159 19 C 0.184 3.816 20 N -0.601 5.601 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.401 0.599 40 H 0.405 0.595 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.047 0.953 47 H 0.251 0.749 48 H 0.033 0.967 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.683 3.488 12.630 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C -0.029 4.029 4 N -0.327 5.327 5 C 0.334 3.666 6 O -0.378 6.378 7 C -0.095 4.095 8 C -0.131 4.131 9 C -0.113 4.113 10 C -0.130 4.130 11 C 0.350 3.650 12 N -0.415 5.415 13 O -0.415 6.415 14 C -0.082 4.082 15 C -0.094 4.094 16 C 0.029 3.971 17 H 0.111 0.889 18 C -0.198 4.198 19 C 0.059 3.941 20 N -0.328 5.328 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.168 0.832 38 H 0.148 0.852 39 H 0.231 0.769 40 H 0.236 0.764 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -22.472 4.093 12.901 26.233 hybrid contribution 0.080 -1.114 -0.439 1.200 sum -22.391 2.979 12.462 25.799 Atomic orbital electron populations 1.21736 0.94974 1.02145 1.02015 1.22102 0.96155 0.97214 1.03447 1.22028 0.80188 0.97190 1.03507 1.47878 1.06440 1.66640 1.11710 1.18351 0.87801 0.78051 0.82397 1.90854 1.13650 1.50616 1.82684 1.20349 0.95262 0.97312 0.96615 1.21892 0.93197 1.00271 0.97738 1.21180 0.99714 0.96313 0.94105 1.20002 0.97309 0.98962 0.96748 1.18350 0.80838 0.81365 0.84455 1.43754 1.26018 1.38129 1.33599 1.90826 1.72321 1.30341 1.48013 1.21247 0.92240 0.98428 0.96332 1.21276 0.99349 0.95908 0.92829 1.22430 0.90979 0.97168 0.86562 0.88898 1.23326 0.97385 0.97442 1.01666 1.21068 0.93487 0.82514 0.97005 1.44329 1.29688 1.04877 1.53915 1.19043 1.09318 0.88943 1.17992 0.90565 1.24813 0.99387 0.96707 0.99586 1.69981 1.34190 1.18203 1.34422 0.86115 0.79393 0.81492 0.78890 1.21698 1.21781 1.20689 1.21786 0.88651 0.93903 0.95249 0.92241 0.92658 0.92307 0.90553 0.91151 0.89199 0.90517 0.83205 0.85197 0.76880 0.76353 0.83997 0.84090 0.89894 0.92744 0.94199 0.93516 0.93824 0.94889 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.88 37.16 0.37 -0.49 16 2 C -0.15 -1.24 5.19 -26.73 -0.14 -1.38 16 3 C 0.09 0.89 4.82 -4.04 -0.02 0.87 16 4 N -0.59 -8.33 2.60 -164.71 -0.43 -8.76 16 5 C 0.55 8.48 6.62 -12.24 -0.08 8.40 16 6 O -0.50 -10.10 12.94 5.35 0.07 -10.03 16 7 C -0.09 -1.09 5.18 -104.90 -0.54 -1.64 16 8 C -0.11 -0.99 7.36 -39.25 -0.29 -1.28 16 9 C -0.09 -0.66 9.53 -39.24 -0.37 -1.03 16 10 C -0.13 -1.14 5.88 -104.89 -0.62 -1.75 16 11 C 0.56 5.17 8.05 -12.24 -0.10 5.08 16 12 N -0.85 -4.00 8.82 30.57 0.27 -3.73 16 13 O -0.54 -7.10 17.17 5.34 0.09 -7.00 16 14 C -0.06 -0.65 9.58 -39.24 -0.38 -1.03 16 15 C -0.07 -0.85 9.61 -39.24 -0.38 -1.23 16 16 C 0.13 2.33 3.43 -65.78 -0.23 2.11 16 17 H 0.09 1.53 7.99 -51.93 -0.41 1.11 16 18 C -0.16 -3.22 6.28 -24.90 -0.16 -3.38 16 19 C 0.18 4.72 5.38 -3.07 -0.02 4.70 16 20 N -0.60 -16.07 3.39 -170.08 -0.58 -16.64 16 21 C -0.22 -6.48 10.27 -15.06 -0.15 -6.63 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 24 N -0.92 -27.81 10.35 55.49 0.57 -27.24 16 25 Si 0.91 22.60 29.56 -169.99 -5.02 17.58 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 29 C 0.13 2.87 6.62 -2.53 -0.02 2.85 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.60 6.40 -51.93 -0.33 0.27 16 35 H 0.09 0.72 4.81 -51.93 -0.25 0.47 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.15 1.14 3.54 -52.48 -0.19 0.96 16 38 H 0.13 0.41 6.39 -52.48 -0.34 0.07 16 39 H 0.40 0.74 6.85 -40.82 -0.28 0.46 16 40 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 41 H 0.14 1.40 7.64 -52.49 -0.40 1.00 16 42 H 0.14 1.61 8.04 -52.49 -0.42 1.19 16 43 H 0.08 1.78 5.62 -51.93 -0.29 1.49 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.04 1.15 7.64 -51.93 -0.40 0.76 16 46 H 0.05 1.29 7.26 -51.93 -0.38 0.91 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.04 0.84 6.16 -51.93 -0.32 0.52 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -36.94 385.71 -9.30 -46.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.88 Total: -0.03 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.21 Total: 3.82 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.16 Total: -56.38 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.16 Total: -17.04 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.94 -9.30 -46.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753322294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.736 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds