Wall clock time and date at job start Wed Apr 1 2020 03:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46778 * 2 1 4 4 N 1.46505 * 109.46783 * 173.79953 * 3 2 1 5 5 C 1.34784 * 119.99962 * 254.67938 * 4 3 2 6 6 O 1.21521 * 120.00229 * 182.33487 * 5 4 3 7 7 C 1.48035 * 119.99539 * 2.33930 * 5 4 3 8 8 C 1.39547 * 120.00521 * 38.47782 * 7 5 4 9 9 C 1.37820 * 120.00376 * 179.71909 * 8 7 5 10 10 C 1.39560 * 119.99508 * 0.55157 * 9 8 7 11 11 C 1.48037 * 119.99698 * 179.74471 * 10 9 8 12 12 N 1.34775 * 120.00316 * 359.97438 * 11 10 9 13 13 O 1.21533 * 119.99859 * 179.97438 * 11 10 9 14 14 C 1.39559 * 120.00165 * 359.72290 * 10 9 8 15 15 C 1.37818 * 119.99705 * 359.97438 * 14 10 9 16 16 C 1.46496 * 120.00213 * 74.68325 * 4 3 2 17 17 H 1.08996 * 110.88463 * 2.42638 * 16 4 3 18 18 C 1.55160 * 111.00619 * 126.35011 * 16 4 3 19 19 C 1.54319 * 102.94203 * 153.57516 * 18 16 4 20 20 N 1.47022 * 107.27339 * 337.80988 * 19 18 16 21 21 C 1.36936 * 125.64825 * 178.90781 * 20 19 18 22 22 H 1.08002 * 119.99788 * 174.97894 * 21 20 19 23 23 C 1.38813 * 120.00213 * 354.97946 * 21 20 19 24 24 N 1.31616 * 119.99945 * 5.62438 * 23 21 20 25 25 Si 1.86797 * 119.99947 * 185.62840 * 23 21 20 26 26 H 1.48507 * 109.47410 * 94.99620 * 25 23 21 27 27 H 1.48505 * 109.47106 * 214.99185 * 25 23 21 28 28 H 1.48502 * 109.47352 * 334.99353 * 25 23 21 29 29 C 1.47429 * 108.70164 * 358.93550 * 20 19 18 30 30 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46937 * 300.00125 * 1 2 3 32 32 H 1.08999 * 109.47031 * 60.00439 * 1 2 3 33 33 H 1.08995 * 109.46937 * 239.99875 * 2 1 3 34 34 H 1.08997 * 109.46826 * 120.00312 * 2 1 3 35 35 H 1.09002 * 109.47745 * 53.80226 * 3 2 1 36 36 H 1.08996 * 109.47497 * 293.79417 * 3 2 1 37 37 H 1.08005 * 119.99923 * 359.97438 * 8 7 5 38 38 H 1.08005 * 120.00261 * 180.30101 * 9 8 7 39 39 H 0.97006 * 119.99971 * 359.97438 * 12 11 10 40 40 H 0.96996 * 120.00253 * 180.02562 * 12 11 10 41 41 H 1.07994 * 119.99898 * 179.97438 * 14 10 9 42 42 H 1.07994 * 119.99831 * 180.02562 * 15 14 10 43 43 H 1.08997 * 110.71554 * 35.21184 * 18 16 4 44 44 H 1.09004 * 110.71819 * 271.94011 * 18 16 4 45 45 H 1.08998 * 109.88374 * 218.38498 * 19 18 16 46 46 H 1.09003 * 109.88444 * 97.22695 * 19 18 16 47 47 H 0.96995 * 120.00259 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.36107 * 142.96942 * 29 20 19 49 49 H 1.08995 * 110.36665 * 265.18236 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4974 1.4451 0.1492 5 6 4.0537 1.7951 1.3259 6 8 5.2630 1.8384 1.4373 7 6 3.1915 2.1267 2.4827 8 6 2.0224 1.4001 2.7126 9 6 1.2227 1.7050 3.7928 10 6 1.5761 2.7480 4.6502 11 6 0.7142 3.0792 5.8073 12 7 -0.4121 2.3739 6.0324 13 8 1.0221 3.9871 6.5542 14 6 2.7422 3.4783 4.4170 15 6 3.5451 3.1693 3.3403 16 6 4.3501 1.0675 -0.9806 17 1 3.7507 0.8550 -1.8658 18 6 5.4050 2.1671 -1.2732 19 6 6.5548 1.3765 -1.9321 20 7 6.4130 -0.0270 -1.5177 21 6 7.2253 -1.0593 -1.9047 22 1 7.0872 -2.0431 -1.4809 23 6 8.2261 -0.8414 -2.8415 24 7 8.4672 0.3776 -3.2755 25 14 9.2307 -2.2781 -3.4865 26 1 8.6372 -2.7663 -4.7573 27 1 10.6272 -1.8359 -3.7302 28 1 9.2263 -3.3745 -2.4848 29 6 5.2511 -0.1390 -0.6172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.5889 1.9874 0.8293 36 1 1.7702 1.9232 -0.9403 37 1 1.7465 0.5961 2.0463 38 1 0.3205 1.1395 3.9735 39 1 -0.6581 1.6495 5.4361 40 1 -0.9770 2.5912 6.7904 41 1 3.0154 4.2856 5.0802 42 1 4.4477 3.7342 3.1601 43 1 5.7399 2.6360 -0.3479 44 1 5.0050 2.9119 -1.9614 45 1 7.5146 1.7675 -1.5946 46 1 6.4824 1.4518 -3.0171 47 1 9.1663 0.5299 -3.9304 48 1 4.7219 -1.0750 -0.7955 49 1 5.5701 -0.0766 0.4232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753322294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:56 Heat of formation + Delta-G solvation = -28.102628 kcal Electronic energy + Delta-G solvation = -30777.220333 eV Core-core repulsion = 26704.466411 eV Total energy + Delta-G solvation = -4072.753923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96422 -40.87928 -39.26840 -38.26524 -37.31275 -34.93842 -34.64351 -33.37912 -32.38833 -31.94932 -30.93640 -29.09255 -27.17326 -26.73091 -25.45763 -23.86593 -22.90186 -22.45561 -22.00289 -21.83453 -20.30927 -19.23062 -18.95928 -18.28716 -17.87757 -17.26698 -16.79775 -16.49196 -16.37138 -16.21195 -15.84805 -15.79363 -15.59612 -15.21111 -14.87344 -14.56552 -14.47603 -14.26792 -14.15787 -13.78472 -13.69294 -13.64548 -13.52286 -12.95719 -12.94017 -12.78724 -12.67519 -12.38903 -12.19241 -12.08538 -12.02062 -11.94882 -11.85866 -11.64857 -11.53129 -11.26184 -10.74567 -10.72443 -10.61529 -10.11729 -9.99297 -9.67168 -8.89222 -7.86420 -5.22559 -0.57187 0.25770 1.39499 1.44036 1.46982 1.55974 1.81993 1.99153 2.46620 2.49470 2.75940 3.27784 3.34489 3.67579 3.71563 3.80092 3.87246 3.88140 3.98979 4.05547 4.18738 4.21809 4.23515 4.30605 4.41683 4.55037 4.60770 4.67805 4.73473 4.75075 4.88560 4.90113 4.98918 5.04124 5.05230 5.08014 5.19203 5.25142 5.28735 5.36084 5.42128 5.57515 5.61620 5.64405 5.68629 5.74942 5.87090 6.17525 6.39374 6.40481 7.07300 7.11889 7.26870 7.74635 8.40936 9.24483 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002517 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.908429 B =11123.763532 C =11818.476906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.088 3.912 4 N -0.589 5.589 5 C 0.543 3.457 6 O -0.562 6.562 7 C -0.108 4.108 8 C -0.104 4.104 9 C -0.071 4.071 10 C -0.125 4.125 11 C 0.562 3.438 12 N -0.824 5.824 13 O -0.586 6.586 14 C -0.072 4.072 15 C -0.087 4.087 16 C 0.154 3.846 17 H 0.116 0.884 18 C -0.147 4.147 19 C 0.195 3.805 20 N -0.623 5.623 21 C -0.244 4.244 22 H 0.081 0.919 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.983 3.017 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.269 1.269 29 C 0.131 3.869 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.419 0.581 40 H 0.415 0.585 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.068 0.932 44 H 0.081 0.919 45 H -0.010 1.010 46 H 0.022 0.978 47 H 0.247 0.753 48 H 0.046 0.954 49 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.077 1.792 13.263 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C -0.033 4.033 4 N -0.319 5.319 5 C 0.333 3.667 6 O -0.442 6.442 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.089 4.089 10 C -0.129 4.129 11 C 0.348 3.652 12 N -0.389 5.389 13 O -0.467 6.467 14 C -0.091 4.091 15 C -0.105 4.105 16 C 0.049 3.951 17 H 0.134 0.866 18 C -0.186 4.186 19 C 0.070 3.930 20 N -0.349 5.349 21 C -0.373 4.373 22 H 0.099 0.901 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.811 3.189 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.193 1.193 29 C 0.005 3.995 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.252 0.748 40 H 0.247 0.753 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.009 0.991 46 H 0.040 0.960 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -26.984 2.351 13.544 30.284 hybrid contribution 1.385 -0.595 -0.537 1.600 sum -25.599 1.756 13.006 28.767 Atomic orbital electron populations 1.21721 0.92446 1.02904 1.03328 1.22072 0.98233 0.95709 1.02638 1.22410 0.76903 0.98759 1.05219 1.47879 1.08144 1.65706 1.10155 1.18969 0.87503 0.76808 0.83462 1.90828 1.16400 1.53143 1.83779 1.20106 0.96452 0.98839 0.95751 1.22060 0.91830 0.99758 0.98479 1.21605 1.00464 0.94924 0.91893 1.20144 0.96613 0.99093 0.97036 1.18386 0.81667 0.81157 0.83963 1.43552 1.24262 1.37317 1.33747 1.90818 1.73670 1.32652 1.49594 1.21225 0.93018 0.98914 0.95924 1.21159 0.99375 0.96406 0.93610 1.22028 0.90726 0.93800 0.88512 0.86623 1.23121 0.96445 0.97986 1.01030 1.20772 0.93445 0.83081 0.95742 1.44649 1.31049 1.04817 1.54397 1.19455 1.09974 0.89731 1.18125 0.90110 1.25737 1.00781 0.99461 1.00041 1.70217 1.34703 1.20312 1.34838 0.84999 0.77139 0.78325 0.78485 1.20690 1.22238 1.19342 1.21854 0.88055 0.96497 0.93122 0.91793 0.90399 0.92014 0.92187 0.91309 0.87104 0.89112 0.81486 0.80120 0.74761 0.75258 0.84527 0.85678 0.91302 0.90091 0.99126 0.95966 0.94328 0.93601 0.96800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.88 71.98 0.71 -0.26 16 2 C -0.15 -1.91 5.19 30.59 0.16 -1.76 16 3 C 0.09 1.38 4.82 86.38 0.42 1.80 16 4 N -0.59 -15.82 2.60 -793.31 -2.06 -17.88 16 5 C 0.54 16.97 6.62 86.84 0.57 17.55 16 6 O -0.56 -23.91 12.94 -3.78 -0.05 -23.96 16 7 C -0.11 -2.47 5.18 -20.04 -0.10 -2.58 16 8 C -0.10 -1.44 7.36 22.49 0.17 -1.28 16 9 C -0.07 -0.64 9.53 22.49 0.21 -0.43 16 10 C -0.13 -1.91 5.88 -20.04 -0.12 -2.02 16 11 C 0.56 8.81 8.05 86.84 0.70 9.51 16 12 N -0.82 -4.27 8.82 -175.47 -1.55 -5.81 16 13 O -0.59 -14.90 17.17 -3.82 -0.07 -14.96 16 14 C -0.07 -1.44 9.58 22.49 0.22 -1.23 16 15 C -0.09 -2.01 9.61 22.49 0.22 -1.79 16 16 C 0.15 5.39 3.43 46.38 0.16 5.54 16 17 H 0.12 3.58 7.99 -2.39 -0.02 3.56 16 18 C -0.15 -6.12 6.28 31.78 0.20 -5.92 16 19 C 0.20 10.57 5.38 86.73 0.47 11.04 16 20 N -0.62 -34.55 3.39 -692.00 -2.35 -36.90 16 21 C -0.24 -14.47 10.27 84.03 0.86 -13.61 16 22 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 23 C -0.07 -4.01 5.48 84.86 0.47 -3.55 16 24 N -0.95 -60.04 10.35 21.65 0.22 -59.82 16 25 Si 0.98 47.38 29.56 68.60 2.03 49.41 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 C 0.13 5.83 6.62 86.85 0.58 6.41 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.92 6.40 -2.39 -0.02 0.91 16 35 H 0.11 1.32 4.81 -2.39 -0.01 1.31 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.17 1.77 3.54 -2.91 -0.01 1.76 16 38 H 0.18 -0.21 6.39 -2.91 -0.02 -0.23 16 39 H 0.42 -0.89 6.85 -92.70 -0.64 -1.52 16 40 H 0.41 1.33 8.93 -92.71 -0.83 0.51 16 41 H 0.14 2.82 7.64 -2.91 -0.02 2.80 16 42 H 0.13 3.18 8.04 -2.91 -0.02 3.16 16 43 H 0.07 3.11 5.62 -2.39 -0.01 3.10 16 44 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 45 H -0.01 -0.60 7.64 -2.39 -0.02 -0.62 16 46 H 0.02 1.29 7.26 -2.39 -0.02 1.27 16 47 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 48 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.01 0.70 6.16 -2.39 -0.01 0.68 16 Total: -1.00 -88.17 385.71 1.60 -86.57 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -0.46 Total: 5.92 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.88 Total: 17.43 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -5.74 Total: -120.41 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.11 Total: -38.92 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -88.17 1.60 -86.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753322294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.465 kcal (2) G-P(sol) polarization free energy of solvation -88.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds