Wall clock time and date at job start Wed Apr 1 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47235 * 2 1 4 4 N 1.27949 * 120.00013 * 94.99380 * 3 2 1 5 5 Si 1.86793 * 120.00031 * 274.99566 * 3 2 1 6 6 H 1.48496 * 109.47318 * 89.99892 * 5 3 2 7 7 H 1.48505 * 109.47407 * 210.00086 * 5 3 2 8 8 H 1.48500 * 109.47297 * 329.99794 * 5 3 2 9 9 C 1.50704 * 109.46915 * 119.99680 * 2 1 3 10 10 O 1.21277 * 119.99949 * 275.99443 * 9 2 1 11 11 N 1.34778 * 120.00020 * 95.98716 * 9 2 1 12 12 C 1.47428 * 125.64689 * 175.51345 * 11 9 2 13 13 C 1.54907 * 104.82893 * 204.16840 * 12 11 9 14 14 H 1.09001 * 111.00634 * 81.06652 * 13 12 11 15 15 N 1.46505 * 111.00221 * 204.91887 * 13 12 11 16 16 C 1.34775 * 120.00006 * 273.54543 * 15 13 12 17 17 O 1.21791 * 119.99812 * 359.97438 * 16 15 13 18 18 C 1.41518 * 120.00237 * 180.02562 * 16 15 13 19 19 C 1.35610 * 119.99824 * 188.09046 * 18 16 15 20 20 C 1.41679 * 120.00277 * 33.37057 * 19 18 16 21 21 C 1.38279 * 126.26071 * 184.87366 * 20 19 18 22 22 C 1.39784 * 107.07791 * 179.88095 * 21 20 19 23 23 C 1.35507 * 107.90873 * 0.38191 * 22 21 20 24 24 N 1.35743 * 108.90807 * 359.76419 * 23 22 21 25 25 H 0.97008 * 125.68748 * 179.97438 * 24 23 22 26 26 C 1.55405 * 101.66933 * 323.07656 * 13 12 11 27 27 C 1.53005 * 110.69350 * 277.05266 * 26 13 12 28 28 C 1.52995 * 110.85544 * 153.70129 * 26 13 12 29 29 C 1.47022 * 125.64673 * 355.56258 * 11 9 2 30 30 H 1.08995 * 109.47642 * 302.00753 * 1 2 3 31 31 H 1.09001 * 109.46654 * 62.00730 * 1 2 3 32 32 H 1.09003 * 109.47126 * 181.99876 * 1 2 3 33 33 H 1.09003 * 109.47645 * 239.99524 * 2 1 3 34 34 H 0.97000 * 119.99696 * 179.97438 * 4 3 2 35 35 H 1.08996 * 110.36845 * 323.00668 * 12 11 9 36 36 H 1.08999 * 110.36487 * 85.22285 * 12 11 9 37 37 H 0.96995 * 120.00020 * 93.55400 * 15 13 12 38 38 H 1.07996 * 120.00134 * 8.08983 * 18 16 15 39 39 H 1.07997 * 120.00155 * 213.36133 * 19 18 16 40 40 H 1.08007 * 126.46110 * 0.02562 * 21 20 19 41 41 H 1.07998 * 126.04460 * 180.11126 * 22 21 20 42 42 H 1.08003 * 125.53888 * 179.76269 * 23 22 21 43 43 H 1.08998 * 109.46898 * 174.82331 * 27 26 13 44 44 H 1.09001 * 109.46736 * 294.81923 * 27 26 13 45 45 H 1.08994 * 109.46983 * 54.81799 * 27 26 13 46 46 H 1.08997 * 109.47152 * 305.08694 * 28 26 13 47 47 H 1.09001 * 109.47140 * 65.08745 * 28 26 13 48 48 H 1.08999 * 109.47499 * 185.08218 * 28 26 13 49 49 H 1.08995 * 109.87894 * 298.31483 * 29 11 9 50 50 H 1.08994 * 109.88774 * 59.33035 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3365 1.9918 1.1039 5 14 2.2109 2.3483 -1.6115 6 1 0.9433 3.0590 -1.9167 7 1 3.3155 3.3340 -1.4957 8 1 2.5159 1.3893 -2.7035 9 6 2.0323 -0.7104 1.2305 10 8 2.1310 -0.1098 2.2796 11 7 2.3717 -2.0131 1.1653 12 6 2.9619 -2.8031 2.2612 13 6 3.7134 -3.9597 1.5560 14 1 4.6885 -3.6306 1.1971 15 7 3.8462 -5.1177 2.4435 16 6 4.8858 -5.1964 3.2977 17 8 5.7149 -4.3049 3.3314 18 6 5.0145 -6.3152 4.1546 19 6 5.9618 -6.3207 5.1250 20 6 6.3233 -5.1115 5.7688 21 6 7.3315 -4.9514 6.7016 22 6 7.3409 -3.6026 7.0685 23 6 6.3574 -2.9762 6.3782 24 7 5.7312 -3.8822 5.5846 25 1 4.9900 -3.6948 4.9876 26 6 2.7626 -4.2738 0.3676 27 6 1.6278 -5.1986 0.8129 28 6 3.5360 -4.8875 -0.8012 29 6 2.2155 -2.8813 -0.0109 30 1 -0.3634 0.5446 0.8714 31 1 -0.3633 0.4824 -0.9075 32 1 -0.3633 -1.0271 0.0358 33 1 1.8934 -0.5139 -0.8899 34 1 2.6602 2.9062 1.1038 35 1 3.6585 -2.1930 2.8362 36 1 2.1790 -3.1967 2.9094 37 1 3.1862 -5.8279 2.4162 38 1 4.3583 -7.1647 4.0358 39 1 6.4405 -7.2467 5.4071 40 1 7.9893 -5.7226 7.0745 41 1 8.0105 -3.1422 7.7798 42 1 6.1117 -1.9268 6.4481 43 1 0.9241 -5.3318 -0.0088 44 1 2.0392 -6.1664 1.0995 45 1 1.1120 -4.7563 1.6651 46 1 4.3572 -4.2273 -1.0800 47 1 3.9345 -5.8575 -0.5038 48 1 2.8672 -5.0151 -1.6524 49 1 1.1616 -2.9572 -0.2782 50 1 2.7821 -2.4757 -0.8490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509567614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:07 Heat of formation + Delta-G solvation = 50.529433 kcal Electronic energy + Delta-G solvation = -31627.691079 eV Core-core repulsion = 27544.691159 eV Total energy + Delta-G solvation = -4082.999920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.26958 -41.66250 -40.45132 -39.28129 -36.72555 -35.45677 -34.67525 -34.25442 -33.28107 -31.72107 -30.38633 -28.85416 -28.68263 -27.50369 -26.19766 -25.21148 -23.56301 -21.99777 -21.68321 -21.16304 -20.75898 -20.39202 -19.69076 -18.94486 -18.69664 -17.78035 -17.10684 -16.95966 -16.46912 -16.09425 -15.71954 -15.48207 -15.34382 -15.26935 -15.00546 -14.92889 -14.90255 -14.62667 -14.45312 -14.40950 -14.06883 -13.98794 -13.75176 -13.60120 -13.24185 -13.19210 -13.08181 -13.03033 -12.89878 -12.82147 -12.80868 -12.45076 -12.27557 -12.26019 -12.15790 -11.76903 -11.41858 -11.04307 -10.70480 -10.65931 -10.21213 -9.64562 -9.62951 -9.49668 -8.39330 -0.45507 0.82215 0.97641 1.32386 1.62759 1.71971 1.75591 1.85756 1.89521 2.09879 2.35849 2.50634 2.66087 3.03985 3.24929 3.40244 3.54404 3.74971 3.89260 3.96987 4.01112 4.04113 4.10688 4.11431 4.14884 4.31885 4.39175 4.43927 4.48082 4.51949 4.54519 4.55845 4.63921 4.65266 4.67968 4.69899 4.75304 4.79195 4.81282 4.95222 4.99742 5.05524 5.10676 5.11021 5.14250 5.19600 5.41559 5.46186 5.48197 6.10507 6.28834 6.45861 6.53797 6.77750 6.95945 7.21956 7.38980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.017 4.017 4 N -0.581 5.581 5 Si 0.933 3.067 6 H -0.236 1.236 7 H -0.245 1.245 8 H -0.233 1.233 9 C 0.533 3.467 10 O -0.491 6.491 11 N -0.624 5.624 12 C 0.100 3.900 13 C 0.142 3.858 14 H 0.105 0.895 15 N -0.719 5.719 16 C 0.549 3.451 17 O -0.550 6.550 18 C -0.312 4.312 19 C 0.069 3.931 20 C -0.009 4.009 21 C -0.134 4.134 22 C -0.218 4.218 23 C 0.031 3.969 24 N -0.510 5.510 25 H 0.417 0.583 26 C -0.082 4.082 27 C -0.145 4.145 28 C -0.138 4.138 29 C 0.107 3.893 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.334 0.666 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.404 0.596 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.166 0.834 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -4.682 -5.126 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.267 4.267 4 N -0.193 5.193 5 Si 0.748 3.252 6 H -0.159 1.159 7 H -0.168 1.168 8 H -0.155 1.155 9 C 0.320 3.680 10 O -0.361 6.361 11 N -0.362 5.362 12 C -0.024 4.024 13 C 0.036 3.964 14 H 0.123 0.877 15 N -0.372 5.372 16 C 0.343 3.657 17 O -0.431 6.431 18 C -0.334 4.334 19 C 0.048 3.952 20 C -0.120 4.120 21 C -0.159 4.159 22 C -0.241 4.241 23 C -0.108 4.108 24 N -0.107 5.107 25 H 0.260 0.740 26 C -0.083 4.083 27 C -0.202 4.202 28 C -0.196 4.196 29 C -0.016 4.016 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.183 0.817 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.090 -3.432 -4.411 6.386 hybrid contribution -0.438 0.098 -0.730 0.857 sum -3.528 -3.334 -5.140 7.070 Atomic orbital electron populations 1.21637 0.90761 1.03200 1.03736 1.20606 0.98572 0.93118 0.97512 1.29949 0.95592 0.98678 1.02495 1.68447 1.05427 1.14755 1.30631 0.85729 0.82504 0.80592 0.76345 1.15943 1.16813 1.15517 1.20079 0.77921 0.79521 0.90522 1.90794 1.50920 1.64007 1.30423 1.48430 1.64358 1.09407 1.13957 1.22499 0.97072 0.92481 0.90362 1.22140 0.99515 0.85615 0.89175 0.87705 1.45967 1.27435 1.23467 1.40346 1.17273 0.80847 0.86260 0.81329 1.90889 1.41361 1.40566 1.70319 1.21679 1.05924 1.02136 1.03627 1.20884 0.88843 0.95849 0.89588 1.18260 1.02276 0.86770 1.04679 1.21577 0.97951 0.97252 0.99168 1.20889 1.02732 0.94455 1.06068 1.22212 0.96737 0.95593 0.96283 1.42676 1.28164 1.07173 1.32645 0.73959 1.21906 0.95821 0.94921 0.95677 1.21865 0.97286 0.98690 1.02403 1.21804 0.99921 1.01255 0.96594 1.22206 1.01536 0.88927 0.88950 0.91133 0.90833 0.91355 0.87784 0.84863 0.90219 0.91387 0.75897 0.84642 0.83450 0.83937 0.84250 0.81693 0.91102 0.91898 0.91810 0.91910 0.91746 0.91532 0.90536 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.21 9.09 37.16 0.34 0.55 16 2 C -0.08 0.01 2.30 -92.92 -0.21 -0.20 16 3 C -0.02 -0.01 4.83 -13.90 -0.07 -0.08 16 4 N -0.58 -1.98 11.40 56.23 0.64 -1.34 16 5 Si 0.93 -1.21 29.33 -169.99 -4.99 -6.20 16 6 H -0.24 0.22 7.11 56.52 0.40 0.62 16 7 H -0.25 0.03 7.11 56.52 0.40 0.43 16 8 H -0.23 0.42 7.11 56.52 0.40 0.82 16 9 C 0.53 1.60 6.80 -10.98 -0.07 1.52 16 10 O -0.49 -3.65 15.09 5.56 0.08 -3.57 16 11 N -0.62 -0.40 3.33 -170.52 -0.57 -0.97 16 12 C 0.10 0.10 6.27 -2.53 -0.02 0.09 16 13 C 0.14 -0.11 2.56 -65.65 -0.17 -0.28 16 14 H 0.11 0.15 7.63 -51.93 -0.40 -0.25 16 15 N -0.72 0.99 5.11 -54.50 -0.28 0.71 16 16 C 0.55 0.74 6.33 -15.01 -0.09 0.65 16 17 O -0.55 -2.71 12.46 5.11 0.06 -2.64 16 18 C -0.31 0.05 9.72 -39.27 -0.38 -0.33 16 19 C 0.07 0.04 9.75 -39.21 -0.38 -0.35 16 20 C -0.01 -0.03 5.99 -83.91 -0.50 -0.53 16 21 C -0.13 -0.36 10.86 -38.99 -0.42 -0.79 16 22 C -0.22 -0.64 10.81 -39.98 -0.43 -1.07 16 23 C 0.03 0.09 11.90 -16.80 -0.20 -0.11 16 24 N -0.51 -1.74 4.55 -10.56 -0.05 -1.79 16 25 H 0.42 1.35 6.03 -40.82 -0.25 1.10 16 26 C -0.08 0.26 0.86 -152.54 -0.13 0.13 16 27 C -0.15 0.62 7.60 37.16 0.28 0.90 16 28 C -0.14 0.49 8.50 37.16 0.32 0.81 16 29 C 0.11 -0.29 5.35 -3.06 -0.02 -0.30 16 30 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 31 H 0.07 -0.25 7.99 -51.93 -0.42 -0.67 16 32 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 33 H 0.10 -0.32 6.57 -51.93 -0.34 -0.66 16 34 H 0.33 0.50 8.23 -40.82 -0.34 0.16 16 35 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.07 0.06 7.73 -51.93 -0.40 -0.34 16 37 H 0.40 -1.43 6.14 -40.82 -0.25 -1.69 16 38 H 0.14 -0.39 8.06 -52.49 -0.42 -0.81 16 39 H 0.15 -0.36 8.06 -52.49 -0.42 -0.78 16 40 H 0.14 0.06 8.06 -52.48 -0.42 -0.36 16 41 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 42 H 0.17 0.12 8.06 -52.48 -0.42 -0.30 16 43 H 0.07 -0.33 8.14 -51.93 -0.42 -0.76 16 44 H 0.06 -0.31 6.66 -51.93 -0.35 -0.66 16 45 H 0.06 -0.22 7.46 -51.93 -0.39 -0.60 16 46 H 0.06 -0.18 8.13 -51.93 -0.42 -0.60 16 47 H 0.06 -0.20 8.14 -51.93 -0.42 -0.62 16 48 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 49 H 0.08 -0.31 7.84 -51.93 -0.41 -0.71 16 50 H 0.07 -0.27 7.31 -51.93 -0.38 -0.65 16 LS Contribution 398.91 15.07 6.01 6.01 Total: 0.00 -9.57 398.91 -9.02 -18.59 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -7.77 Total: -9.40 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.17 Total: 0.59 kcal Atomic # 7 Polarization: -3.14 SS G_CDS: -0.25 Total: -3.39 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.15 Total: -6.21 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -4.99 Total: -6.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -9.57 -9.02 -18.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509567614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.121 kcal (2) G-P(sol) polarization free energy of solvation -9.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds