Wall clock time and date at job start Wed Apr 1 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47235 * 2 1 4 4 N 1.27949 * 120.00013 * 94.99380 * 3 2 1 5 5 Si 1.86793 * 120.00031 * 274.99566 * 3 2 1 6 6 H 1.48496 * 109.47318 * 89.99892 * 5 3 2 7 7 H 1.48505 * 109.47407 * 210.00086 * 5 3 2 8 8 H 1.48500 * 109.47297 * 329.99794 * 5 3 2 9 9 C 1.50704 * 109.46915 * 119.99680 * 2 1 3 10 10 O 1.21277 * 119.99949 * 275.99443 * 9 2 1 11 11 N 1.34778 * 120.00020 * 95.98716 * 9 2 1 12 12 C 1.47428 * 125.64689 * 175.51345 * 11 9 2 13 13 C 1.54907 * 104.82893 * 204.16840 * 12 11 9 14 14 H 1.09001 * 111.00634 * 81.06652 * 13 12 11 15 15 N 1.46505 * 111.00221 * 204.91887 * 13 12 11 16 16 C 1.34775 * 120.00006 * 273.54543 * 15 13 12 17 17 O 1.21791 * 119.99812 * 359.97438 * 16 15 13 18 18 C 1.41518 * 120.00237 * 180.02562 * 16 15 13 19 19 C 1.35610 * 119.99824 * 188.09046 * 18 16 15 20 20 C 1.41679 * 120.00277 * 33.37057 * 19 18 16 21 21 C 1.38279 * 126.26071 * 184.87366 * 20 19 18 22 22 C 1.39784 * 107.07791 * 179.88095 * 21 20 19 23 23 C 1.35507 * 107.90873 * 0.38191 * 22 21 20 24 24 N 1.35743 * 108.90807 * 359.76419 * 23 22 21 25 25 H 0.97008 * 125.68748 * 179.97438 * 24 23 22 26 26 C 1.55405 * 101.66933 * 323.07656 * 13 12 11 27 27 C 1.53005 * 110.69350 * 277.05266 * 26 13 12 28 28 C 1.52995 * 110.85544 * 153.70129 * 26 13 12 29 29 C 1.47022 * 125.64673 * 355.56258 * 11 9 2 30 30 H 1.08995 * 109.47642 * 302.00753 * 1 2 3 31 31 H 1.09001 * 109.46654 * 62.00730 * 1 2 3 32 32 H 1.09003 * 109.47126 * 181.99876 * 1 2 3 33 33 H 1.09003 * 109.47645 * 239.99524 * 2 1 3 34 34 H 0.97000 * 119.99696 * 179.97438 * 4 3 2 35 35 H 1.08996 * 110.36845 * 323.00668 * 12 11 9 36 36 H 1.08999 * 110.36487 * 85.22285 * 12 11 9 37 37 H 0.96995 * 120.00020 * 93.55400 * 15 13 12 38 38 H 1.07996 * 120.00134 * 8.08983 * 18 16 15 39 39 H 1.07997 * 120.00155 * 213.36133 * 19 18 16 40 40 H 1.08007 * 126.46110 * 0.02562 * 21 20 19 41 41 H 1.07998 * 126.04460 * 180.11126 * 22 21 20 42 42 H 1.08003 * 125.53888 * 179.76269 * 23 22 21 43 43 H 1.08998 * 109.46898 * 174.82331 * 27 26 13 44 44 H 1.09001 * 109.46736 * 294.81923 * 27 26 13 45 45 H 1.08994 * 109.46983 * 54.81799 * 27 26 13 46 46 H 1.08997 * 109.47152 * 305.08694 * 28 26 13 47 47 H 1.09001 * 109.47140 * 65.08745 * 28 26 13 48 48 H 1.08999 * 109.47499 * 185.08218 * 28 26 13 49 49 H 1.08995 * 109.87894 * 298.31483 * 29 11 9 50 50 H 1.08994 * 109.88774 * 59.33035 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3365 1.9918 1.1039 5 14 2.2109 2.3483 -1.6115 6 1 0.9433 3.0590 -1.9167 7 1 3.3155 3.3340 -1.4957 8 1 2.5159 1.3893 -2.7035 9 6 2.0323 -0.7104 1.2305 10 8 2.1310 -0.1098 2.2796 11 7 2.3717 -2.0131 1.1653 12 6 2.9619 -2.8031 2.2612 13 6 3.7134 -3.9597 1.5560 14 1 4.6885 -3.6306 1.1971 15 7 3.8462 -5.1177 2.4435 16 6 4.8858 -5.1964 3.2977 17 8 5.7149 -4.3049 3.3314 18 6 5.0145 -6.3152 4.1546 19 6 5.9618 -6.3207 5.1250 20 6 6.3233 -5.1115 5.7688 21 6 7.3315 -4.9514 6.7016 22 6 7.3409 -3.6026 7.0685 23 6 6.3574 -2.9762 6.3782 24 7 5.7312 -3.8822 5.5846 25 1 4.9900 -3.6948 4.9876 26 6 2.7626 -4.2738 0.3676 27 6 1.6278 -5.1986 0.8129 28 6 3.5360 -4.8875 -0.8012 29 6 2.2155 -2.8813 -0.0109 30 1 -0.3634 0.5446 0.8714 31 1 -0.3633 0.4824 -0.9075 32 1 -0.3633 -1.0271 0.0358 33 1 1.8934 -0.5139 -0.8899 34 1 2.6602 2.9062 1.1038 35 1 3.6585 -2.1930 2.8362 36 1 2.1790 -3.1967 2.9094 37 1 3.1862 -5.8279 2.4162 38 1 4.3583 -7.1647 4.0358 39 1 6.4405 -7.2467 5.4071 40 1 7.9893 -5.7226 7.0745 41 1 8.0105 -3.1422 7.7798 42 1 6.1117 -1.9268 6.4481 43 1 0.9241 -5.3318 -0.0088 44 1 2.0392 -6.1664 1.0995 45 1 1.1120 -4.7563 1.6651 46 1 4.3572 -4.2273 -1.0800 47 1 3.9345 -5.8575 -0.5038 48 1 2.8672 -5.0151 -1.6524 49 1 1.1616 -2.9572 -0.2782 50 1 2.7821 -2.4757 -0.8490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509567614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:06 Heat of formation + Delta-G solvation = 51.480375 kcal Electronic energy + Delta-G solvation = -31627.649843 eV Core-core repulsion = 27544.691159 eV Total energy + Delta-G solvation = -4082.958684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.38785 -41.72140 -40.59622 -39.34685 -36.83190 -35.56200 -34.74817 -34.21524 -33.29878 -31.90102 -30.44788 -28.96174 -28.37035 -27.37991 -26.17322 -25.27536 -23.61135 -22.09434 -21.77015 -21.32322 -20.84218 -20.33499 -19.75155 -18.99634 -18.76145 -17.84444 -17.15085 -17.04369 -16.51655 -16.18707 -15.75944 -15.50606 -15.38543 -15.20872 -15.09745 -14.95103 -14.81993 -14.62713 -14.42607 -14.37356 -14.14829 -13.91923 -13.75163 -13.54841 -13.32355 -13.22837 -13.04524 -12.92441 -12.87009 -12.79112 -12.68436 -12.38467 -12.15758 -12.06888 -11.95213 -11.64686 -11.46551 -11.19799 -10.86462 -10.76340 -10.27524 -9.82581 -9.73403 -9.57361 -8.52579 -0.51090 0.83051 1.02807 1.44814 1.56330 1.63386 1.75382 1.79774 1.89591 1.95003 2.32223 2.38586 2.55803 3.14831 3.29377 3.44028 3.73425 3.85705 3.93019 4.02859 4.08397 4.10251 4.11599 4.18078 4.21487 4.25076 4.40315 4.45983 4.54026 4.58032 4.62772 4.68282 4.73295 4.76209 4.80014 4.82961 4.95662 4.97453 4.99240 4.99518 5.05335 5.07564 5.18539 5.25373 5.32574 5.33038 5.35232 5.38078 5.42752 5.96444 6.12361 6.45595 6.49416 6.57834 6.94789 7.17193 7.23582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.024 4.024 4 N -0.633 5.633 5 Si 0.984 3.016 6 H -0.237 1.237 7 H -0.269 1.269 8 H -0.211 1.211 9 C 0.523 3.477 10 O -0.549 6.549 11 N -0.622 5.622 12 C 0.103 3.897 13 C 0.148 3.852 14 H 0.080 0.920 15 N -0.703 5.703 16 C 0.540 3.460 17 O -0.590 6.590 18 C -0.302 4.302 19 C 0.055 3.945 20 C -0.021 4.021 21 C -0.152 4.152 22 C -0.230 4.230 23 C 0.005 3.995 24 N -0.518 5.518 25 H 0.414 0.586 26 C -0.070 4.070 27 C -0.145 4.145 28 C -0.136 4.136 29 C 0.099 3.901 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.336 0.664 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 -7.063 -7.914 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 C -0.271 4.271 4 N -0.245 5.245 5 Si 0.798 3.202 6 H -0.161 1.161 7 H -0.194 1.194 8 H -0.132 1.132 9 C 0.311 3.689 10 O -0.425 6.425 11 N -0.358 5.358 12 C -0.022 4.022 13 C 0.041 3.959 14 H 0.099 0.901 15 N -0.356 5.356 16 C 0.335 3.665 17 O -0.475 6.475 18 C -0.323 4.323 19 C 0.035 3.965 20 C -0.132 4.132 21 C -0.177 4.177 22 C -0.254 4.254 23 C -0.134 4.134 24 N -0.114 5.114 25 H 0.256 0.744 26 C -0.071 4.071 27 C -0.202 4.202 28 C -0.193 4.193 29 C -0.023 4.023 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.258 0.742 38 H 0.187 0.813 39 H 0.197 0.803 40 H 0.180 0.820 41 H 0.169 0.831 42 H 0.193 0.807 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.120 0.880 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.485 -5.883 -7.229 10.343 hybrid contribution -0.034 0.806 0.121 0.816 sum -4.519 -5.077 -7.107 9.834 Atomic orbital electron populations 1.21664 0.89469 1.04172 1.03743 1.20886 0.99611 0.92549 0.97097 1.30717 0.93567 0.99223 1.03586 1.68549 1.07813 1.15422 1.32764 0.85038 0.81302 0.79526 0.74377 1.16055 1.19373 1.13176 1.20798 0.77225 0.79934 0.90914 1.90763 1.53543 1.65445 1.32708 1.48514 1.63143 1.09237 1.14867 1.22384 0.96450 0.92644 0.90751 1.21973 0.98708 0.85165 0.90024 0.90149 1.45829 1.26895 1.23446 1.39381 1.17680 0.80820 0.86199 0.81795 1.90881 1.43074 1.42089 1.71461 1.21985 1.05568 1.02267 1.02500 1.21297 0.89183 0.96035 0.89989 1.18802 1.02166 0.87340 1.04882 1.21908 0.98581 0.97653 0.99599 1.21168 1.02880 0.94998 1.06333 1.22522 0.97484 0.96360 0.96998 1.42769 1.28288 1.07691 1.32663 0.74376 1.21882 0.95481 0.95172 0.94516 1.21892 0.96929 0.98674 1.02701 1.21794 0.99940 1.00798 0.96768 1.22556 1.03481 0.88412 0.87893 0.93941 0.88162 0.89716 0.84076 0.84736 0.94176 0.91368 0.74241 0.81292 0.80335 0.81970 0.83149 0.80744 0.89522 0.90809 0.92619 0.92734 0.91922 0.89654 0.88018 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.52 9.09 71.98 0.65 1.17 16 2 C -0.08 0.04 2.30 -12.29 -0.03 0.02 16 3 C -0.02 -0.06 4.83 88.67 0.43 0.37 16 4 N -0.63 -6.07 11.40 24.11 0.27 -5.79 16 5 Si 0.98 -3.57 29.33 68.60 2.01 -1.56 16 6 H -0.24 0.80 7.11 99.48 0.71 1.51 16 7 H -0.27 -0.06 7.11 99.48 0.71 0.65 16 8 H -0.21 1.48 7.11 99.48 0.71 2.18 16 9 C 0.52 4.03 6.80 87.66 0.60 4.62 16 10 O -0.55 -10.26 15.09 -3.02 -0.05 -10.30 16 11 N -0.62 -1.39 3.33 -811.80 -2.70 -4.09 16 12 C 0.10 0.45 6.27 86.85 0.54 1.00 16 13 C 0.15 -0.10 2.56 46.47 0.12 0.02 16 14 H 0.08 0.39 7.63 -2.39 -0.02 0.38 16 15 N -0.70 1.78 5.11 -444.53 -2.27 -0.50 16 16 C 0.54 1.93 6.33 85.05 0.54 2.47 16 17 O -0.59 -7.25 12.46 -4.64 -0.06 -7.30 16 18 C -0.30 0.28 9.72 22.47 0.22 0.50 16 19 C 0.06 0.05 9.75 22.51 0.22 0.27 16 20 C -0.02 -0.15 5.99 39.08 0.23 0.08 16 21 C -0.15 -1.02 10.86 22.65 0.25 -0.78 16 22 C -0.23 -1.84 10.81 22.01 0.24 -1.60 16 23 C 0.00 0.04 11.90 83.46 0.99 1.03 16 24 N -0.52 -4.94 4.55 -187.33 -0.85 -5.79 16 25 H 0.41 4.06 6.03 -92.70 -0.56 3.50 16 26 C -0.07 0.53 0.86 -50.91 -0.04 0.49 16 27 C -0.14 1.55 7.60 71.98 0.55 2.10 16 28 C -0.14 1.22 8.50 71.98 0.61 1.83 16 29 C 0.10 -0.68 5.35 86.73 0.46 -0.22 16 30 H 0.04 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.10 -0.93 7.99 -2.39 -0.02 -0.95 16 32 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.14 -1.21 6.57 -2.39 -0.02 -1.23 16 34 H 0.34 2.07 8.23 -92.71 -0.76 1.30 16 35 H 0.04 0.49 8.08 -2.39 -0.02 0.48 16 36 H 0.07 0.27 7.73 -2.39 -0.02 0.25 16 37 H 0.42 -3.45 6.14 -92.71 -0.57 -4.02 16 38 H 0.17 -1.38 8.06 -2.91 -0.02 -1.41 16 39 H 0.18 -1.12 8.06 -2.91 -0.02 -1.14 16 40 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.15 0.66 8.06 -2.91 -0.02 0.63 16 42 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.09 -1.12 8.14 -2.39 -0.02 -1.13 16 44 H 0.07 -0.92 6.66 -2.39 -0.02 -0.94 16 45 H 0.05 -0.46 7.46 -2.39 -0.02 -0.48 16 46 H 0.05 -0.37 8.13 -2.39 -0.02 -0.38 16 47 H 0.06 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H 0.08 -1.03 8.14 -2.39 -0.02 -1.05 16 49 H 0.10 -1.14 7.84 -2.39 -0.02 -1.16 16 50 H 0.09 -0.88 7.31 -2.39 -0.02 -0.90 16 Total: 0.00 -28.68 398.91 2.77 -25.90 By element: Atomic # 1 Polarization: -3.78 SS G_CDS: -0.17 Total: -3.95 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.58 Total: 13.37 kcal Atomic # 7 Polarization: -10.62 SS G_CDS: -5.55 Total: -16.17 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.10 Total: -17.61 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.01 Total: -1.56 kcal Total: -28.68 2.77 -25.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509567614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.384 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds