Wall clock time and date at job start Wed Apr 1 2020 04:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47413 * 2 1 4 4 N 1.27947 * 119.99646 * 24.99912 * 3 2 1 5 5 Si 1.86803 * 120.00440 * 205.00209 * 3 2 1 6 6 H 1.48502 * 109.46917 * 89.99548 * 5 3 2 7 7 H 1.48498 * 109.46924 * 209.99945 * 5 3 2 8 8 H 1.48500 * 109.46764 * 330.00148 * 5 3 2 9 9 C 1.50700 * 109.47213 * 120.00380 * 2 1 3 10 10 O 1.21293 * 119.99881 * 257.04863 * 9 2 1 11 11 N 1.34772 * 120.00107 * 77.05293 * 9 2 1 12 12 C 1.48428 * 127.82021 * 175.84328 * 11 9 2 13 13 C 1.54386 * 104.48196 * 219.56701 * 12 11 9 14 14 H 1.09000 * 110.33875 * 217.18652 * 13 12 11 15 15 N 1.46501 * 110.34668 * 95.03380 * 13 12 11 16 16 C 1.34775 * 120.00016 * 87.86804 * 15 13 12 17 17 O 1.21779 * 120.00032 * 0.02562 * 16 15 13 18 18 C 1.41521 * 119.99966 * 180.02562 * 16 15 13 19 19 C 1.35617 * 119.99891 * 187.72641 * 18 16 15 20 20 C 1.41673 * 119.99959 * 32.78089 * 19 18 16 21 21 C 1.38284 * 126.25672 * 187.24394 * 20 19 18 22 22 C 1.39789 * 107.07555 * 180.25154 * 21 20 19 23 23 C 1.35503 * 107.91356 * 359.73617 * 22 21 20 24 24 N 1.35761 * 108.90667 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.68590 * 179.97438 * 24 23 22 26 26 C 1.54285 * 105.05606 * 336.10687 * 13 12 11 27 27 C 1.52995 * 110.34428 * 118.92410 * 26 13 12 28 28 C 1.53002 * 110.34407 * 241.08118 * 26 13 12 29 29 C 1.48144 * 127.84232 * 355.79646 * 11 9 2 30 30 H 1.08993 * 109.47113 * 64.15198 * 1 2 3 31 31 H 1.09001 * 109.47048 * 184.15545 * 1 2 3 32 32 H 1.09006 * 109.46704 * 304.14964 * 1 2 3 33 33 H 1.09005 * 109.47119 * 239.99808 * 2 1 3 34 34 H 0.96996 * 120.00114 * 179.97438 * 4 3 2 35 35 H 1.09003 * 110.44594 * 100.83565 * 12 11 9 36 36 H 1.08992 * 110.49516 * 338.31892 * 12 11 9 37 37 H 0.96998 * 120.00000 * 267.87935 * 15 13 12 38 38 H 1.07998 * 119.99560 * 7.72556 * 18 16 15 39 39 H 1.08001 * 119.99646 * 212.77253 * 19 18 16 40 40 H 1.07999 * 126.46059 * 359.95998 * 21 20 19 41 41 H 1.07996 * 126.04380 * 179.71331 * 22 21 20 42 42 H 1.07990 * 125.54497 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47255 * 60.00311 * 27 26 13 44 44 H 1.08996 * 109.47433 * 180.02562 * 27 26 13 45 45 H 1.09005 * 109.47354 * 300.00460 * 27 26 13 46 46 H 1.09002 * 109.47494 * 60.00098 * 28 26 13 47 47 H 1.09002 * 109.47219 * 179.97438 * 28 26 13 48 48 H 1.09003 * 109.47014 * 299.99648 * 28 26 13 49 49 H 1.09001 * 110.39995 * 21.64398 * 29 11 9 50 50 H 1.09001 * 110.40802 * 259.21430 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2988 2.3587 0.4683 5 14 3.7260 1.8127 -0.6837 6 1 3.6169 2.1137 -2.1338 7 1 4.2857 2.9911 0.0258 8 1 4.6217 0.6447 -0.4867 9 6 2.0323 -0.7105 1.2304 10 8 2.4565 -0.0706 2.1695 11 7 2.0104 -2.0568 1.2873 12 6 2.5348 -2.9308 2.3663 13 6 3.1769 -4.1209 1.6213 14 1 3.0053 -5.0477 2.1688 15 7 4.6132 -3.8948 1.4422 16 6 5.4803 -4.2778 2.4002 17 8 5.0699 -4.8123 3.4146 18 6 6.8677 -4.0588 2.2274 19 6 7.7521 -4.5812 3.1130 20 6 7.4761 -5.8199 3.7428 21 6 8.2092 -6.4008 4.7613 22 6 7.5877 -7.6131 5.0745 23 6 6.5078 -7.7487 4.2672 24 7 6.4262 -6.6633 3.4558 25 1 5.7450 -6.5101 2.7825 26 6 2.4664 -4.1673 0.2525 27 6 3.4766 -3.9629 -0.8782 28 6 1.7358 -5.5001 0.0773 29 6 1.4568 -2.9998 0.2878 30 1 -0.3633 0.4480 -0.9248 31 1 -0.3633 -1.0250 0.0745 32 1 -0.3633 0.5769 0.8505 33 1 1.8933 -0.5139 -0.8900 34 1 1.6223 3.2731 0.4687 35 1 1.7221 -3.2762 3.0053 36 1 3.2842 -2.4022 2.9552 37 1 4.9401 -3.4692 0.6342 38 1 7.2222 -3.4757 1.3904 39 1 8.6668 -4.0529 3.3380 40 1 9.0974 -5.9965 5.2239 41 1 7.9112 -8.3174 5.8266 42 1 5.8236 -8.5841 4.2690 43 1 4.2282 -4.7515 -0.8410 44 1 2.9602 -3.9978 -1.8375 45 1 3.9611 -2.9935 -0.7618 46 1 0.9933 -5.6141 0.8672 47 1 1.2392 -5.5175 -0.8928 48 1 2.4539 -6.3182 0.1329 49 1 1.3931 -2.5228 -0.6902 50 1 0.4757 -3.3551 0.6031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509567642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:29 Heat of formation + Delta-G solvation = 48.382426 kcal Electronic energy + Delta-G solvation = -31798.062687 eV Core-core repulsion = 27714.969666 eV Total energy + Delta-G solvation = -4083.093021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31641 -41.75147 -40.47317 -39.31193 -37.02720 -35.41999 -34.68473 -34.35834 -33.09889 -31.76217 -30.40323 -29.13764 -28.37841 -27.57088 -26.36597 -25.31674 -23.71634 -22.04654 -21.58253 -21.19450 -20.76694 -20.32157 -19.78268 -18.94979 -18.41407 -17.79853 -17.61519 -17.07056 -16.75143 -16.49240 -15.71702 -15.44155 -15.30216 -15.18169 -15.03277 -14.98110 -14.85828 -14.69923 -14.49719 -14.16464 -14.01867 -13.93593 -13.69689 -13.53980 -13.24125 -13.18285 -13.12641 -13.10046 -12.98354 -12.85442 -12.83379 -12.40450 -12.29225 -12.22433 -12.17173 -11.94384 -11.59718 -10.99662 -10.71034 -10.67781 -10.32221 -9.90476 -9.72395 -9.61784 -8.42194 -0.45567 0.74181 1.00453 1.32884 1.53444 1.60646 1.72458 1.80502 1.95965 2.08520 2.20613 2.48593 2.62022 3.04842 3.24788 3.37838 3.53581 3.65397 3.87823 3.90473 3.94312 4.07582 4.09307 4.16801 4.21334 4.24219 4.33135 4.38398 4.44298 4.49452 4.52180 4.54569 4.58743 4.60481 4.62814 4.66277 4.71849 4.80817 4.86796 4.95003 4.95429 4.98945 5.01157 5.10044 5.13958 5.33376 5.41179 5.43870 5.46868 6.07317 6.24912 6.43686 6.47559 6.73678 6.85564 7.12919 7.22974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C 0.009 3.991 4 N -0.610 5.610 5 Si 0.931 3.069 6 H -0.237 1.237 7 H -0.242 1.242 8 H -0.236 1.236 9 C 0.547 3.453 10 O -0.525 6.525 11 N -0.624 5.624 12 C 0.096 3.904 13 C 0.140 3.860 14 H 0.108 0.892 15 N -0.723 5.723 16 C 0.548 3.452 17 O -0.551 6.551 18 C -0.307 4.307 19 C 0.065 3.935 20 C -0.005 4.005 21 C -0.135 4.135 22 C -0.217 4.217 23 C 0.027 3.973 24 N -0.510 5.510 25 H 0.416 0.584 26 C -0.086 4.086 27 C -0.147 4.147 28 C -0.139 4.139 29 C 0.105 3.895 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.341 0.659 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.403 0.597 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.165 0.835 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -3.764 -7.539 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 C -0.241 4.241 4 N -0.222 5.222 5 Si 0.746 3.254 6 H -0.160 1.160 7 H -0.165 1.165 8 H -0.158 1.158 9 C 0.335 3.665 10 O -0.400 6.400 11 N -0.359 5.359 12 C -0.027 4.027 13 C 0.033 3.967 14 H 0.126 0.874 15 N -0.376 5.376 16 C 0.342 3.658 17 O -0.433 6.433 18 C -0.329 4.329 19 C 0.044 3.956 20 C -0.115 4.115 21 C -0.161 4.161 22 C -0.241 4.241 23 C -0.111 4.111 24 N -0.106 5.106 25 H 0.259 0.741 26 C -0.087 4.087 27 C -0.204 4.204 28 C -0.196 4.196 29 C -0.019 4.019 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.158 0.842 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.241 0.759 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.183 0.817 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.307 -3.324 -6.379 7.200 hybrid contribution 0.201 0.730 -0.720 1.044 sum -0.105 -2.594 -7.099 7.559 Atomic orbital electron populations 1.21615 0.90697 1.02196 1.04390 1.20541 0.99468 0.92927 0.97045 1.29696 1.03700 0.95575 0.95124 1.68046 1.38081 1.05428 1.10667 0.85746 0.75652 0.82997 0.80986 1.16050 1.16472 1.15797 1.19944 0.78012 0.79950 0.88611 1.90753 1.46379 1.64598 1.38278 1.49004 1.60080 1.04417 1.22408 1.22840 0.99191 0.90430 0.90284 1.21941 0.80282 0.98841 0.95588 0.87435 1.46313 1.06319 1.63095 1.21883 1.17235 0.87303 0.78104 0.83186 1.90880 1.80507 1.44096 1.27842 1.21722 0.92740 1.13925 1.04540 1.20878 0.98232 0.88848 0.87631 1.18236 0.93812 0.94667 1.04816 1.21580 1.01051 0.96344 0.97118 1.20884 0.98718 0.99985 1.04476 1.22158 1.00975 0.92950 0.95037 1.42584 1.22078 1.15866 1.30070 0.74115 1.21784 0.95922 0.96312 0.94682 1.21887 0.99023 1.01898 0.97625 1.21865 1.00328 0.94676 1.02773 1.22674 0.96720 0.89021 0.93441 0.91136 0.92280 0.90470 0.87436 0.84214 0.90054 0.89294 0.75893 0.84872 0.83523 0.83988 0.84286 0.81723 0.91442 0.91155 0.92277 0.91740 0.91456 0.91846 0.89355 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.09 8.72 37.16 0.32 0.42 16 2 C -0.08 0.02 1.96 -92.93 -0.18 -0.17 16 3 C 0.01 0.01 4.15 -13.90 -0.06 -0.05 16 4 N -0.61 -1.37 12.60 56.23 0.71 -0.66 16 5 Si 0.93 -0.12 29.45 -169.99 -5.01 -5.13 16 6 H -0.24 0.17 7.11 56.52 0.40 0.57 16 7 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 8 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 9 C 0.55 1.31 6.99 -10.99 -0.08 1.23 16 10 O -0.53 -3.60 16.45 5.55 0.09 -3.51 16 11 N -0.62 0.07 3.32 -169.08 -0.56 -0.49 16 12 C 0.10 0.06 6.77 -2.25 -0.02 0.05 16 13 C 0.14 -0.22 3.01 -66.53 -0.20 -0.42 16 14 H 0.11 -0.09 7.17 -51.93 -0.37 -0.47 16 15 N -0.72 0.86 4.55 -55.36 -0.25 0.61 16 16 C 0.55 0.73 6.34 -15.01 -0.10 0.63 16 17 O -0.55 -2.40 12.40 5.12 0.06 -2.34 16 18 C -0.31 -0.04 9.72 -39.27 -0.38 -0.43 16 19 C 0.06 0.04 9.76 -39.21 -0.38 -0.34 16 20 C 0.00 -0.01 5.95 -83.90 -0.50 -0.51 16 21 C -0.14 -0.32 10.86 -38.98 -0.42 -0.74 16 22 C -0.22 -0.47 10.81 -39.98 -0.43 -0.90 16 23 C 0.03 0.04 11.90 -16.79 -0.20 -0.16 16 24 N -0.51 -1.12 4.51 -10.56 -0.05 -1.16 16 25 H 0.42 0.63 6.15 -40.82 -0.25 0.38 16 26 C -0.09 0.34 1.03 -153.11 -0.16 0.18 16 27 C -0.15 0.69 7.09 37.15 0.26 0.96 16 28 C -0.14 0.64 8.26 37.16 0.31 0.94 16 29 C 0.10 -0.37 5.14 -2.41 -0.01 -0.38 16 30 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.06 -0.13 7.25 -51.93 -0.38 -0.51 16 32 H 0.08 0.15 7.63 -51.93 -0.40 -0.25 16 33 H 0.11 -0.39 6.96 -51.93 -0.36 -0.75 16 34 H 0.34 0.23 8.23 -40.82 -0.34 -0.11 16 35 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 36 H 0.09 0.34 7.84 -51.93 -0.41 -0.07 16 37 H 0.40 -1.08 5.81 -40.82 -0.24 -1.31 16 38 H 0.13 -0.29 8.06 -52.49 -0.42 -0.71 16 39 H 0.15 -0.30 8.06 -52.49 -0.42 -0.73 16 40 H 0.14 0.05 8.06 -52.49 -0.42 -0.38 16 41 H 0.14 0.08 8.06 -52.49 -0.42 -0.35 16 42 H 0.17 -0.20 8.06 -52.49 -0.42 -0.62 16 43 H 0.07 -0.30 7.74 -51.93 -0.40 -0.70 16 44 H 0.07 -0.38 8.14 -51.93 -0.42 -0.80 16 45 H 0.06 -0.26 6.99 -51.93 -0.36 -0.62 16 46 H 0.06 -0.28 8.10 -51.93 -0.42 -0.70 16 47 H 0.07 -0.35 8.14 -51.93 -0.42 -0.77 16 48 H 0.06 -0.26 8.14 -51.93 -0.42 -0.68 16 49 H 0.09 -0.45 6.56 -51.93 -0.34 -0.80 16 50 H 0.08 -0.34 7.84 -51.93 -0.41 -0.75 16 LS Contribution 398.32 15.07 6.00 6.00 Total: 0.00 -9.04 398.32 -8.92 -17.95 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: -7.70 Total: -11.57 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.22 Total: 0.31 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -0.15 Total: -1.71 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: 0.15 Total: -5.85 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: -5.01 Total: -5.13 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -9.04 -8.92 -17.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509567642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.337 kcal (2) G-P(sol) polarization free energy of solvation -9.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds