Wall clock time and date at job start Wed Apr 1 2020 04:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47413 * 2 1 4 4 N 1.27947 * 119.99646 * 24.99912 * 3 2 1 5 5 Si 1.86803 * 120.00440 * 205.00209 * 3 2 1 6 6 H 1.48502 * 109.46917 * 89.99548 * 5 3 2 7 7 H 1.48498 * 109.46924 * 209.99945 * 5 3 2 8 8 H 1.48500 * 109.46764 * 330.00148 * 5 3 2 9 9 C 1.50700 * 109.47213 * 120.00380 * 2 1 3 10 10 O 1.21293 * 119.99881 * 257.04863 * 9 2 1 11 11 N 1.34772 * 120.00107 * 77.05293 * 9 2 1 12 12 C 1.48428 * 127.82021 * 175.84328 * 11 9 2 13 13 C 1.54386 * 104.48196 * 219.56701 * 12 11 9 14 14 H 1.09000 * 110.33875 * 217.18652 * 13 12 11 15 15 N 1.46501 * 110.34668 * 95.03380 * 13 12 11 16 16 C 1.34775 * 120.00016 * 87.86804 * 15 13 12 17 17 O 1.21779 * 120.00032 * 0.02562 * 16 15 13 18 18 C 1.41521 * 119.99966 * 180.02562 * 16 15 13 19 19 C 1.35617 * 119.99891 * 187.72641 * 18 16 15 20 20 C 1.41673 * 119.99959 * 32.78089 * 19 18 16 21 21 C 1.38284 * 126.25672 * 187.24394 * 20 19 18 22 22 C 1.39789 * 107.07555 * 180.25154 * 21 20 19 23 23 C 1.35503 * 107.91356 * 359.73617 * 22 21 20 24 24 N 1.35761 * 108.90667 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.68590 * 179.97438 * 24 23 22 26 26 C 1.54285 * 105.05606 * 336.10687 * 13 12 11 27 27 C 1.52995 * 110.34428 * 118.92410 * 26 13 12 28 28 C 1.53002 * 110.34407 * 241.08118 * 26 13 12 29 29 C 1.48144 * 127.84232 * 355.79646 * 11 9 2 30 30 H 1.08993 * 109.47113 * 64.15198 * 1 2 3 31 31 H 1.09001 * 109.47048 * 184.15545 * 1 2 3 32 32 H 1.09006 * 109.46704 * 304.14964 * 1 2 3 33 33 H 1.09005 * 109.47119 * 239.99808 * 2 1 3 34 34 H 0.96996 * 120.00114 * 179.97438 * 4 3 2 35 35 H 1.09003 * 110.44594 * 100.83565 * 12 11 9 36 36 H 1.08992 * 110.49516 * 338.31892 * 12 11 9 37 37 H 0.96998 * 120.00000 * 267.87935 * 15 13 12 38 38 H 1.07998 * 119.99560 * 7.72556 * 18 16 15 39 39 H 1.08001 * 119.99646 * 212.77253 * 19 18 16 40 40 H 1.07999 * 126.46059 * 359.95998 * 21 20 19 41 41 H 1.07996 * 126.04380 * 179.71331 * 22 21 20 42 42 H 1.07990 * 125.54497 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47255 * 60.00311 * 27 26 13 44 44 H 1.08996 * 109.47433 * 180.02562 * 27 26 13 45 45 H 1.09005 * 109.47354 * 300.00460 * 27 26 13 46 46 H 1.09002 * 109.47494 * 60.00098 * 28 26 13 47 47 H 1.09002 * 109.47219 * 179.97438 * 28 26 13 48 48 H 1.09003 * 109.47014 * 299.99648 * 28 26 13 49 49 H 1.09001 * 110.39995 * 21.64398 * 29 11 9 50 50 H 1.09001 * 110.40802 * 259.21430 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2988 2.3587 0.4683 5 14 3.7260 1.8127 -0.6837 6 1 3.6169 2.1137 -2.1338 7 1 4.2857 2.9911 0.0258 8 1 4.6217 0.6447 -0.4867 9 6 2.0323 -0.7105 1.2304 10 8 2.4565 -0.0706 2.1695 11 7 2.0104 -2.0568 1.2873 12 6 2.5348 -2.9308 2.3663 13 6 3.1769 -4.1209 1.6213 14 1 3.0053 -5.0477 2.1688 15 7 4.6132 -3.8948 1.4422 16 6 5.4803 -4.2778 2.4002 17 8 5.0699 -4.8123 3.4146 18 6 6.8677 -4.0588 2.2274 19 6 7.7521 -4.5812 3.1130 20 6 7.4761 -5.8199 3.7428 21 6 8.2092 -6.4008 4.7613 22 6 7.5877 -7.6131 5.0745 23 6 6.5078 -7.7487 4.2672 24 7 6.4262 -6.6633 3.4558 25 1 5.7450 -6.5101 2.7825 26 6 2.4664 -4.1673 0.2525 27 6 3.4766 -3.9629 -0.8782 28 6 1.7358 -5.5001 0.0773 29 6 1.4568 -2.9998 0.2878 30 1 -0.3633 0.4480 -0.9248 31 1 -0.3633 -1.0250 0.0745 32 1 -0.3633 0.5769 0.8505 33 1 1.8933 -0.5139 -0.8900 34 1 1.6223 3.2731 0.4687 35 1 1.7221 -3.2762 3.0053 36 1 3.2842 -2.4022 2.9552 37 1 4.9401 -3.4692 0.6342 38 1 7.2222 -3.4757 1.3904 39 1 8.6668 -4.0529 3.3380 40 1 9.0974 -5.9965 5.2239 41 1 7.9112 -8.3174 5.8266 42 1 5.8236 -8.5841 4.2690 43 1 4.2282 -4.7515 -0.8410 44 1 2.9602 -3.9978 -1.8375 45 1 3.9611 -2.9935 -0.7618 46 1 0.9933 -5.6141 0.8672 47 1 1.2392 -5.5175 -0.8928 48 1 2.4539 -6.3182 0.1329 49 1 1.3931 -2.5228 -0.6902 50 1 0.4757 -3.3551 0.6031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509567642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:27 Heat of formation + Delta-G solvation = 50.337147 kcal Electronic energy + Delta-G solvation = -31797.977924 eV Core-core repulsion = 27714.969666 eV Total energy + Delta-G solvation = -4083.008258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.36629 -41.76020 -40.58172 -39.33359 -37.11187 -35.46683 -34.73072 -34.25525 -33.11623 -31.86629 -30.39524 -29.09149 -28.12253 -27.41106 -26.31476 -25.34858 -23.70238 -22.10109 -21.60669 -21.28669 -20.81257 -20.20366 -19.80785 -18.94213 -18.43945 -17.82464 -17.66513 -17.06551 -16.78722 -16.46973 -15.80343 -15.46850 -15.24443 -15.15066 -15.03384 -14.98361 -14.84496 -14.70097 -14.39255 -14.13197 -13.97477 -13.86408 -13.64506 -13.39467 -13.25247 -13.18231 -13.10303 -12.96842 -12.89465 -12.87122 -12.65607 -12.35521 -12.26211 -12.05668 -11.93469 -11.68212 -11.63355 -11.11692 -10.84469 -10.74038 -10.34924 -9.95111 -9.80906 -9.69154 -8.49893 -0.49422 0.70973 1.00159 1.33432 1.47603 1.53942 1.62620 1.81170 1.95571 1.98845 2.22479 2.42169 2.57435 3.23892 3.35396 3.40526 3.70482 3.87797 3.97939 4.03885 4.07382 4.09329 4.22168 4.23027 4.29327 4.33296 4.44085 4.47247 4.50701 4.54708 4.61897 4.66796 4.68303 4.77453 4.84252 4.86451 4.94105 4.98889 5.00936 5.01509 5.08048 5.12749 5.14251 5.34209 5.35814 5.37272 5.37764 5.39535 5.50532 5.98829 6.15274 6.41396 6.50289 6.65958 6.83411 7.01497 7.19428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C 0.001 3.999 4 N -0.638 5.638 5 Si 0.962 3.038 6 H -0.219 1.219 7 H -0.269 1.269 8 H -0.238 1.238 9 C 0.542 3.458 10 O -0.583 6.583 11 N -0.618 5.618 12 C 0.095 3.905 13 C 0.144 3.856 14 H 0.100 0.900 15 N -0.710 5.710 16 C 0.541 3.459 17 O -0.587 6.587 18 C -0.307 4.307 19 C 0.054 3.946 20 C -0.022 4.022 21 C -0.155 4.155 22 C -0.235 4.235 23 C 0.016 3.984 24 N -0.513 5.513 25 H 0.417 0.583 26 C -0.074 4.074 27 C -0.148 4.148 28 C -0.136 4.136 29 C 0.099 3.901 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.150 0.850 34 H 0.343 0.657 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.412 0.588 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.188 0.812 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.116 0.884 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -4.562 -10.305 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.101 4.101 3 C -0.248 4.248 4 N -0.251 5.251 5 Si 0.778 3.222 6 H -0.141 1.141 7 H -0.194 1.194 8 H -0.160 1.160 9 C 0.331 3.669 10 O -0.462 6.462 11 N -0.351 5.351 12 C -0.030 4.030 13 C 0.037 3.963 14 H 0.118 0.882 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.472 6.472 18 C -0.328 4.328 19 C 0.033 3.967 20 C -0.132 4.132 21 C -0.181 4.181 22 C -0.259 4.259 23 C -0.122 4.122 24 N -0.109 5.109 25 H 0.260 0.740 26 C -0.075 4.075 27 C -0.205 4.205 28 C -0.194 4.194 29 C -0.023 4.023 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.252 0.748 38 H 0.176 0.824 39 H 0.188 0.812 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.205 0.795 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.078 0.922 49 H 0.134 0.866 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.656 -4.155 -9.209 10.125 hybrid contribution 0.268 0.972 0.192 1.027 sum -0.388 -3.183 -9.018 9.571 Atomic orbital electron populations 1.21581 0.90244 1.02941 1.03655 1.20728 0.99806 0.92297 0.97230 1.30146 1.04375 0.96018 0.94235 1.68098 1.39218 1.06025 1.11788 0.85326 0.74114 0.81548 0.81254 1.14139 1.19380 1.16001 1.20463 0.77269 0.80460 0.88749 1.90726 1.49133 1.65968 1.40385 1.49045 1.59150 1.04139 1.22785 1.22774 0.98426 0.91003 0.90750 1.21924 0.80083 0.97209 0.97048 0.88227 1.46243 1.06311 1.62200 1.21561 1.17524 0.88128 0.77779 0.83011 1.90861 1.81116 1.45831 1.29347 1.21965 0.92039 1.13850 1.04972 1.21225 0.99474 0.88511 0.87454 1.18640 0.93936 0.95516 1.05149 1.21893 1.01852 0.96750 0.97579 1.21173 0.99195 1.00415 1.05102 1.22606 1.01338 0.93478 0.94802 1.42658 1.22049 1.16024 1.30175 0.74032 1.21741 0.95796 0.96716 0.93261 1.21922 0.98880 1.01837 0.97902 1.21856 1.00155 0.93843 1.03544 1.23007 0.97072 0.88408 0.93783 0.89805 0.90381 0.93616 0.83241 0.83937 0.90235 0.93032 0.74781 0.82401 0.81153 0.82698 0.83250 0.79503 0.91523 0.89315 0.92324 0.91942 0.89933 0.92240 0.86579 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.29 8.72 71.98 0.63 0.92 16 2 C -0.08 0.11 1.96 -12.29 -0.02 0.09 16 3 C 0.00 0.00 4.15 88.67 0.37 0.37 16 4 N -0.64 -3.60 12.60 24.11 0.30 -3.29 16 5 Si 0.96 -0.65 29.45 68.60 2.02 1.37 16 6 H -0.22 0.77 7.11 99.48 0.71 1.48 16 7 H -0.27 -0.98 7.11 99.48 0.71 -0.27 16 8 H -0.24 0.13 7.11 99.48 0.71 0.84 16 9 C 0.54 2.85 6.99 87.66 0.61 3.46 16 10 O -0.58 -9.33 16.45 -3.07 -0.05 -9.38 16 11 N -0.62 0.19 3.32 -807.23 -2.68 -2.49 16 12 C 0.09 0.26 6.77 86.48 0.59 0.85 16 13 C 0.14 -0.41 3.01 45.90 0.14 -0.27 16 14 H 0.10 -0.08 7.17 -2.39 -0.02 -0.09 16 15 N -0.71 1.52 4.55 -447.25 -2.03 -0.51 16 16 C 0.54 1.91 6.34 85.05 0.54 2.45 16 17 O -0.59 -6.15 12.40 -4.60 -0.06 -6.21 16 18 C -0.31 -0.12 9.72 22.47 0.22 0.10 16 19 C 0.05 0.09 9.76 22.51 0.22 0.30 16 20 C -0.02 -0.13 5.95 39.08 0.23 0.10 16 21 C -0.16 -0.90 10.86 22.66 0.25 -0.66 16 22 C -0.24 -1.28 10.81 22.01 0.24 -1.04 16 23 C 0.02 0.07 11.90 83.45 0.99 1.06 16 24 N -0.51 -2.86 4.51 -187.33 -0.84 -3.70 16 25 H 0.42 1.79 6.15 -92.71 -0.57 1.22 16 26 C -0.07 0.70 1.03 -51.28 -0.05 0.65 16 27 C -0.15 1.76 7.09 71.98 0.51 2.27 16 28 C -0.14 1.50 8.26 71.98 0.59 2.09 16 29 C 0.10 -0.91 5.14 86.53 0.45 -0.46 16 30 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.08 -0.50 7.25 -2.39 -0.02 -0.52 16 32 H 0.04 0.21 7.63 -2.38 -0.02 0.20 16 33 H 0.15 -1.55 6.96 -2.38 -0.02 -1.57 16 34 H 0.34 1.00 8.23 -92.71 -0.76 0.24 16 35 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.05 0.55 7.84 -2.39 -0.02 0.53 16 37 H 0.41 -2.49 5.81 -92.71 -0.54 -3.02 16 38 H 0.16 -0.85 8.06 -2.91 -0.02 -0.87 16 39 H 0.17 -0.74 8.06 -2.91 -0.02 -0.76 16 40 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.15 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.19 -0.37 8.06 -2.92 -0.02 -0.39 16 43 H 0.07 -0.73 7.74 -2.39 -0.02 -0.75 16 44 H 0.09 -1.30 8.14 -2.39 -0.02 -1.32 16 45 H 0.06 -0.66 6.99 -2.38 -0.02 -0.67 16 46 H 0.06 -0.63 8.10 -2.39 -0.02 -0.65 16 47 H 0.08 -1.10 8.14 -2.39 -0.02 -1.12 16 48 H 0.06 -0.56 8.14 -2.39 -0.02 -0.58 16 49 H 0.12 -1.66 6.56 -2.39 -0.02 -1.67 16 50 H 0.09 -1.01 7.84 -2.39 -0.02 -1.03 16 Total: 0.00 -25.45 398.32 3.00 -22.44 By element: Atomic # 1 Polarization: -10.37 SS G_CDS: -0.14 Total: -10.51 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.49 Total: 12.29 kcal Atomic # 7 Polarization: -4.74 SS G_CDS: -5.26 Total: -10.00 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.11 Total: -15.59 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.02 Total: 1.37 kcal Total: -25.45 3.00 -22.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509567642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.781 kcal (2) G-P(sol) polarization free energy of solvation -25.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds