Wall clock time and date at job start Wed Apr 1 2020 04:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47313 * 2 1 4 4 N 1.27940 * 120.00045 * 94.99873 * 3 2 1 5 5 Si 1.86795 * 119.99852 * 275.00039 * 3 2 1 6 6 H 1.48507 * 109.47341 * 359.97438 * 5 3 2 7 7 H 1.48496 * 109.47437 * 119.99913 * 5 3 2 8 8 H 1.48499 * 109.47327 * 239.99898 * 5 3 2 9 9 C 1.50710 * 109.47289 * 119.99757 * 2 1 3 10 10 O 1.21275 * 119.99824 * 240.00606 * 9 2 1 11 11 N 1.34773 * 119.99515 * 59.99740 * 9 2 1 12 12 C 1.46500 * 119.99713 * 180.02562 * 11 9 2 13 13 C 1.53001 * 109.47472 * 204.99948 * 12 11 9 14 14 C 1.53000 * 109.47522 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46799 * 60.00046 * 14 13 12 16 16 N 1.46504 * 109.46932 * 60.00449 * 15 14 13 17 17 C 1.34777 * 119.99850 * 155.00163 * 16 15 14 18 18 O 1.21778 * 120.00126 * 359.97438 * 17 16 15 19 19 C 1.41516 * 119.99652 * 179.97438 * 17 16 15 20 20 C 1.35620 * 119.99826 * 188.37369 * 19 17 16 21 21 C 1.41674 * 119.99973 * 32.28434 * 20 19 17 22 22 C 1.38287 * 126.25966 * 187.25642 * 21 20 19 23 23 C 1.39784 * 107.07799 * 179.97438 * 22 21 20 24 24 C 1.35505 * 107.90991 * 359.73197 * 23 22 21 25 25 N 1.35761 * 108.91084 * 0.43657 * 24 23 22 26 26 H 0.96999 * 125.69097 * 179.82593 * 25 24 23 27 27 C 1.53000 * 109.47408 * 300.00346 * 15 14 13 28 28 C 1.52993 * 109.47147 * 59.99975 * 27 15 14 29 29 H 1.09001 * 109.46995 * 300.00140 * 1 2 3 30 30 H 1.09004 * 109.47287 * 60.00128 * 1 2 3 31 31 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47390 * 239.99766 * 2 1 3 33 33 H 0.97008 * 119.99804 * 180.02562 * 4 3 2 34 34 H 0.96999 * 120.00446 * 0.02562 * 11 9 2 35 35 H 1.09003 * 109.47502 * 325.00257 * 12 11 9 36 36 H 1.09007 * 109.46653 * 59.99828 * 13 12 11 37 37 H 1.09003 * 109.47009 * 300.00611 * 13 12 11 38 38 H 1.08995 * 109.46934 * 300.00508 * 14 13 12 39 39 H 1.08997 * 109.47247 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.47153 * 179.97438 * 15 14 13 41 41 H 0.97000 * 119.99965 * 334.99419 * 16 15 14 42 42 H 1.08000 * 120.00264 * 8.37469 * 19 17 16 43 43 H 1.07998 * 119.99799 * 212.28024 * 20 19 17 44 44 H 1.07998 * 126.45524 * 359.95627 * 22 21 20 45 45 H 1.08000 * 126.04486 * 180.02562 * 23 22 21 46 46 H 1.08000 * 125.54492 * 180.25968 * 24 23 22 47 47 H 1.09007 * 109.47014 * 180.02562 * 27 15 14 48 48 H 1.09003 * 109.46746 * 299.99547 * 27 15 14 49 49 H 1.09006 * 109.47168 * 179.97438 * 28 27 15 50 50 H 1.08995 * 109.47390 * 60.00388 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3366 1.9917 1.1038 5 14 2.2107 2.3483 -1.6116 6 1 1.7969 1.4711 -2.7361 7 1 1.3501 3.5582 -1.5843 8 1 3.6277 2.7529 -1.7957 9 6 2.0324 -0.7104 1.2306 10 8 2.7295 -0.1209 2.0288 11 7 1.7067 -2.0007 1.4438 12 6 2.1946 -2.6911 2.6403 13 6 2.2462 -4.1970 2.3748 14 6 2.7564 -4.9180 3.6241 15 6 1.8123 -4.6387 4.7953 16 7 0.4694 -5.1230 4.4661 17 6 -0.3869 -5.4569 5.4519 18 8 -0.0442 -5.3566 6.6161 19 6 -1.6843 -5.9242 5.1339 20 6 -2.6022 -6.0984 6.1170 21 6 -2.5917 -5.2529 7.2538 22 6 -3.3677 -5.3991 8.3890 23 6 -3.0354 -4.3502 9.2513 24 6 -2.0811 -3.6011 8.6478 25 7 -1.8066 -4.1356 7.4304 26 1 -1.1620 -3.7904 6.7931 27 6 1.7606 -3.1328 5.0608 28 6 1.2505 -2.4119 3.8115 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 2.6597 2.9064 1.1038 34 1 1.1493 -2.4722 0.8052 35 1 3.1937 -2.3310 2.8857 36 1 2.9192 -4.3960 1.5406 37 1 1.2471 -4.5572 2.1294 38 1 3.7555 -4.5578 3.8690 39 1 2.7936 -5.9908 3.4348 40 1 2.1755 -5.1528 5.6853 41 1 0.1965 -5.2032 3.5388 42 1 -1.9436 -6.1421 4.1084 43 1 -3.3410 -6.8816 6.0333 44 1 -4.0937 -6.1769 8.5743 45 1 -3.4605 -4.1715 10.2279 46 1 -1.6166 -2.7203 9.0660 47 1 1.0883 -2.9340 5.8955 48 1 2.7598 -2.7726 5.3057 49 1 1.2132 -1.3391 4.0008 50 1 0.2513 -2.7721 3.5666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704002142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:25 Heat of formation + Delta-G solvation = 32.548923 kcal Electronic energy + Delta-G solvation = -31051.628587 eV Core-core repulsion = 26967.848974 eV Total energy + Delta-G solvation = -4083.779614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31348 -41.40825 -40.68015 -39.14132 -36.83105 -35.75699 -34.69094 -34.02460 -32.84005 -31.91501 -31.84803 -30.06379 -28.84749 -25.97852 -25.07745 -23.91914 -23.61747 -22.11914 -22.02431 -21.28634 -20.86832 -20.58677 -19.94787 -19.12846 -18.64577 -17.49403 -17.35437 -16.87882 -16.54107 -16.35280 -15.95376 -15.62389 -15.40135 -15.10047 -15.07040 -15.05257 -14.82087 -14.55035 -14.36296 -14.21901 -14.07636 -13.86254 -13.75173 -13.52393 -13.26306 -13.20383 -13.15317 -13.02270 -12.85966 -12.68466 -12.34094 -12.21902 -12.12391 -11.99849 -11.55281 -11.42637 -11.36630 -11.07122 -10.72314 -10.72284 -10.13384 -9.91164 -9.76266 -9.51936 -8.48361 -0.44477 0.91897 1.10051 1.48932 1.63345 1.76807 1.83913 1.88855 2.00062 2.29588 2.38646 2.43327 2.59427 3.42246 3.63674 3.64008 3.87077 4.00442 4.05238 4.11544 4.13574 4.14403 4.21303 4.29218 4.30731 4.38056 4.40946 4.44711 4.48493 4.51942 4.59434 4.66574 4.76125 4.80067 4.92325 4.95204 5.01488 5.03440 5.08407 5.09079 5.10548 5.15157 5.25984 5.28546 5.33350 5.37175 5.40233 5.54133 5.64721 6.00180 6.15982 6.61214 6.63732 6.71449 7.03350 7.28882 7.49342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.023 4.023 4 N -0.623 5.623 5 Si 0.980 3.020 6 H -0.207 1.207 7 H -0.258 1.258 8 H -0.269 1.269 9 C 0.508 3.492 10 O -0.550 6.550 11 N -0.719 5.719 12 C 0.151 3.849 13 C -0.116 4.116 14 C -0.118 4.118 15 C 0.149 3.851 16 N -0.705 5.705 17 C 0.538 3.462 18 O -0.592 6.592 19 C -0.297 4.297 20 C 0.048 3.952 21 C -0.019 4.019 22 C -0.157 4.157 23 C -0.232 4.232 24 C 0.006 3.994 25 N -0.516 5.516 26 H 0.415 0.585 27 C -0.121 4.121 28 C -0.114 4.114 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.331 0.669 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.413 0.587 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.180 0.820 47 H 0.047 0.953 48 H 0.067 0.933 49 H 0.036 0.964 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 -3.644 -10.133 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.271 4.271 4 N -0.235 5.235 5 Si 0.795 3.205 6 H -0.127 1.127 7 H -0.182 1.182 8 H -0.194 1.194 9 C 0.294 3.706 10 O -0.426 6.426 11 N -0.372 5.372 12 C 0.045 3.955 13 C -0.154 4.154 14 C -0.157 4.157 15 C 0.044 3.956 16 N -0.357 5.357 17 C 0.332 3.668 18 O -0.477 6.477 19 C -0.318 4.318 20 C 0.027 3.973 21 C -0.130 4.130 22 C -0.182 4.182 23 C -0.256 4.256 24 C -0.132 4.132 25 N -0.112 5.112 26 H 0.257 0.743 27 C -0.161 4.161 28 C -0.153 4.153 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.251 0.749 42 H 0.185 0.815 43 H 0.193 0.807 44 H 0.177 0.823 45 H 0.167 0.833 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.835 -2.940 -8.702 9.613 hybrid contribution 0.506 0.872 -0.394 1.082 sum -2.330 -2.068 -9.096 9.615 Atomic orbital electron populations 1.21730 0.89779 1.04639 1.03317 1.20918 0.99356 0.92373 0.98117 1.30497 0.93927 0.99644 1.02992 1.68527 1.07564 1.14629 1.32823 0.85029 0.80261 0.79735 0.75458 1.12721 1.18156 1.19351 1.20940 0.79896 0.81950 0.87818 1.90773 1.38283 1.65895 1.47651 1.45966 1.54369 1.11602 1.25294 1.20828 0.97126 0.92916 0.84581 1.21755 1.03641 0.91530 0.98496 1.21744 0.98736 1.01989 0.93199 1.20827 0.82809 0.93141 0.98809 1.45969 1.14177 1.65583 1.09922 1.17603 0.87305 0.76694 0.85150 1.90869 1.79799 1.56406 1.20672 1.22046 0.93568 1.14365 1.01863 1.21259 0.96756 0.91272 0.87980 1.18747 1.00295 0.93900 1.00029 1.21886 1.02429 1.00794 0.93122 1.21155 1.03097 0.99095 1.02227 1.22539 1.01558 1.02219 0.86888 1.42698 1.31104 1.21694 1.15694 0.74271 1.21790 1.01559 0.95365 0.97353 1.21733 0.99862 0.99004 0.94682 0.93947 0.89091 0.88839 0.83384 0.85200 0.74771 0.92172 0.89369 0.89196 0.90193 0.89283 0.91345 0.74882 0.81483 0.80719 0.82342 0.83293 0.80277 0.93452 0.91416 0.94511 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 1.09 9.02 71.98 0.65 1.74 16 2 C -0.09 0.34 2.65 -12.28 -0.03 0.31 16 3 C -0.02 -0.02 4.75 88.68 0.42 0.41 16 4 N -0.62 -4.81 11.22 24.11 0.27 -4.54 16 5 Si 0.98 -3.73 29.29 68.60 2.01 -1.72 16 6 H -0.21 1.62 7.11 99.48 0.71 2.33 16 7 H -0.26 0.38 7.11 99.48 0.71 1.08 16 8 H -0.27 -0.06 7.11 99.48 0.71 0.65 16 9 C 0.51 1.35 7.07 87.66 0.62 1.97 16 10 O -0.55 -7.57 13.99 -3.01 -0.04 -7.61 16 11 N -0.72 3.28 4.97 -442.52 -2.20 1.08 16 12 C 0.15 -0.39 2.45 44.99 0.11 -0.28 16 13 C -0.12 1.07 5.22 30.59 0.16 1.23 16 14 C -0.12 0.76 5.61 30.59 0.17 0.93 16 15 C 0.15 -0.23 2.78 44.99 0.13 -0.10 16 16 N -0.70 2.64 4.22 -451.56 -1.91 0.73 16 17 C 0.54 1.33 6.28 85.05 0.53 1.86 16 18 O -0.59 -6.53 12.39 -4.60 -0.06 -6.58 16 19 C -0.30 0.53 9.72 22.47 0.22 0.75 16 20 C 0.05 0.01 9.76 22.51 0.22 0.23 16 21 C -0.02 -0.12 5.95 39.08 0.23 0.11 16 22 C -0.16 -0.95 10.86 22.66 0.25 -0.71 16 23 C -0.23 -1.56 10.81 22.01 0.24 -1.33 16 24 C 0.01 0.04 11.90 83.45 0.99 1.03 16 25 N -0.52 -3.89 4.51 -187.32 -0.84 -4.73 16 26 H 0.42 2.97 6.14 -92.71 -0.57 2.40 16 27 C -0.12 -0.17 5.60 30.59 0.17 0.00 16 28 C -0.11 -0.01 5.34 30.59 0.16 0.15 16 29 H 0.04 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.09 -1.03 7.95 -2.38 -0.02 -1.05 16 31 H 0.09 -1.21 7.56 -2.39 -0.02 -1.23 16 32 H 0.15 -1.70 7.85 -2.39 -0.02 -1.72 16 33 H 0.33 1.64 8.23 -92.70 -0.76 0.88 16 34 H 0.41 -5.03 8.02 -92.71 -0.74 -5.77 16 35 H 0.06 0.24 7.58 -2.39 -0.02 0.22 16 36 H 0.09 -0.91 8.14 -2.38 -0.02 -0.93 16 37 H 0.09 -1.22 6.51 -2.39 -0.02 -1.23 16 38 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.07 0.26 7.57 -2.38 -0.02 0.24 16 41 H 0.41 -4.04 6.82 -92.71 -0.63 -4.67 16 42 H 0.17 -1.52 8.06 -2.91 -0.02 -1.54 16 43 H 0.18 -1.13 8.06 -2.91 -0.02 -1.15 16 44 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 45 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 46 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 47 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 48 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 50 H 0.07 -0.19 7.60 -2.39 -0.02 -0.21 16 Total: 0.00 -28.01 396.80 1.50 -26.50 By element: Atomic # 1 Polarization: -10.46 SS G_CDS: -0.97 Total: -11.42 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.24 Total: 8.31 kcal Atomic # 7 Polarization: -2.78 SS G_CDS: -4.68 Total: -7.46 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.10 Total: -14.20 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: 2.01 Total: -1.72 kcal Total: -28.01 1.50 -26.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704002142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.051 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds