Wall clock time and date at job start Wed Apr 1 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46481 * 2 1 4 4 N 1.27937 * 120.00145 * 95.00191 * 3 2 1 5 5 Si 1.86799 * 119.99885 * 274.99346 * 3 2 1 6 6 H 1.48503 * 109.47034 * 60.00524 * 5 3 2 7 7 H 1.48504 * 109.47380 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47401 * 300.00313 * 5 3 2 9 9 C 1.50694 * 109.46889 * 119.99285 * 2 1 3 10 10 O 1.21285 * 120.00398 * 333.75823 * 9 2 1 11 11 N 1.34781 * 119.99847 * 153.75784 * 9 2 1 12 12 C 1.47019 * 125.64687 * 354.98041 * 11 9 2 13 13 C 1.54367 * 107.28901 * 178.87039 * 12 11 9 14 14 C 1.55159 * 102.92076 * 337.85950 * 13 12 11 15 15 H 1.08998 * 111.00427 * 277.35954 * 14 13 12 16 16 C 1.52998 * 111.00555 * 153.54770 * 14 13 12 17 17 N 1.46504 * 109.47463 * 69.57908 * 16 14 13 18 18 C 1.46496 * 120.00242 * 270.00544 * 17 16 14 19 19 C 1.34782 * 119.99435 * 89.99810 * 17 16 14 20 20 O 1.21774 * 120.00203 * 0.02562 * 19 17 16 21 21 C 1.41516 * 119.99498 * 180.02562 * 19 17 16 22 22 C 1.35621 * 119.99938 * 188.26740 * 21 19 17 23 23 C 1.41674 * 119.99819 * 31.88847 * 22 21 19 24 24 C 1.38285 * 126.25799 * 187.21301 * 23 22 21 25 25 C 1.39780 * 107.07743 * 180.02562 * 24 23 22 26 26 C 1.35501 * 107.91339 * 0.02562 * 25 24 23 27 27 N 1.35750 * 108.90784 * 0.26333 * 26 25 24 28 28 H 0.97006 * 125.69025 * 179.73348 * 27 26 25 29 29 C 1.47423 * 125.64975 * 174.93498 * 11 9 2 30 30 H 1.08998 * 109.47611 * 305.00740 * 1 2 3 31 31 H 1.09000 * 109.46855 * 65.01469 * 1 2 3 32 32 H 1.09003 * 109.46840 * 185.00746 * 1 2 3 33 33 H 1.08995 * 109.47298 * 240.00128 * 2 1 3 34 34 H 0.97009 * 120.00409 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.88210 * 298.32160 * 12 11 9 36 36 H 1.09001 * 109.88645 * 59.32970 * 12 11 9 37 37 H 1.09004 * 110.75915 * 219.49372 * 13 12 11 38 38 H 1.08997 * 110.71063 * 96.20283 * 13 12 11 39 39 H 1.09008 * 109.47038 * 309.58291 * 16 14 13 40 40 H 1.08998 * 109.47531 * 189.58260 * 16 14 13 41 41 H 1.09002 * 109.46914 * 269.99819 * 18 17 16 42 42 H 1.08998 * 109.46915 * 29.99365 * 18 17 16 43 43 H 1.08996 * 109.47103 * 149.99722 * 18 17 16 44 44 H 1.08000 * 120.00092 * 8.25738 * 21 19 17 45 45 H 1.08001 * 119.99974 * 211.89504 * 22 21 19 46 46 H 1.08004 * 126.45763 * 0.02562 * 24 23 22 47 47 H 1.08006 * 126.04309 * 179.97438 * 25 24 23 48 48 H 1.07996 * 125.54231 * 179.97438 * 26 25 24 49 49 H 1.08994 * 110.36900 * 85.32583 * 29 11 9 50 50 H 1.09003 * 110.36893 * 323.00609 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3365 1.9919 1.1037 5 14 2.2107 2.3484 -1.6116 6 1 0.8883 2.4353 -2.2817 7 1 2.7201 3.7169 -1.3414 8 1 3.1660 1.6302 -2.4930 9 6 2.0323 -0.7102 1.2305 10 8 1.3462 -0.7508 2.2299 11 7 3.2440 -1.3004 1.2206 12 6 4.1304 -1.4177 0.0535 13 6 5.4125 -2.1387 0.5217 14 6 5.4140 -1.8846 2.0524 15 1 5.8319 -0.9053 2.2854 16 6 6.1708 -2.9903 2.7911 17 7 7.6015 -2.8856 2.4937 18 6 8.1658 -3.6028 1.3476 19 6 8.3984 -2.1294 3.2744 20 8 7.9294 -1.5335 4.2272 21 6 9.7803 -2.0278 2.9868 22 6 10.6112 -1.4080 3.8613 23 6 10.3431 -1.4602 5.2515 24 6 11.0154 -0.7661 6.2407 25 6 10.4253 -1.1135 7.4593 26 6 9.4268 -1.9929 7.2032 27 7 9.3703 -2.2169 5.8655 28 1 8.7466 -2.8090 5.4167 29 6 3.9004 -1.9344 2.3783 30 1 -0.3634 0.5895 0.8417 31 1 -0.3633 0.4341 -0.9315 32 1 -0.3633 -1.0238 0.0897 33 1 1.8934 -0.5138 -0.8899 34 1 2.6594 2.9066 1.1038 35 1 3.6408 -2.0005 -0.7267 36 1 4.3780 -0.4260 -0.3251 37 1 6.2948 -1.6987 0.0569 38 1 5.3544 -3.2059 0.3081 39 1 5.8022 -3.9630 2.4652 40 1 6.0140 -2.8833 3.8644 41 1 8.4901 -4.5944 1.6634 42 1 7.4080 -3.6988 0.5702 43 1 9.0193 -3.0488 0.9568 44 1 10.1733 -2.4441 2.0710 45 1 11.4772 -0.8746 3.4980 46 1 11.8408 -0.0842 6.0984 47 1 10.7148 -0.7465 8.4330 48 1 8.7839 -2.4457 7.9434 49 1 3.5689 -2.9674 2.4837 50 1 3.6897 -1.3728 3.2885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737965133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:00 Heat of formation + Delta-G solvation = 48.374346 kcal Electronic energy + Delta-G solvation = -30933.690903 eV Core-core repulsion = 26850.597532 eV Total energy + Delta-G solvation = -4083.093372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.23742 -41.31981 -40.66036 -38.86236 -36.94866 -36.60066 -34.80042 -33.43568 -32.79770 -31.74989 -30.78172 -29.38936 -28.33207 -27.17813 -25.82785 -24.46321 -23.77568 -22.19904 -21.65927 -21.21179 -21.17152 -20.07915 -19.60791 -18.77755 -18.55072 -17.91375 -17.49325 -17.24493 -16.58719 -16.32906 -16.04553 -15.70956 -15.27835 -15.04822 -14.92519 -14.74688 -14.63661 -14.57462 -14.49583 -14.13754 -14.02621 -13.99351 -13.90028 -13.66117 -13.52853 -13.24717 -13.14148 -13.07942 -12.93393 -12.78349 -12.69560 -12.47194 -12.40495 -12.26152 -12.01254 -11.74098 -11.51921 -10.96119 -10.73855 -10.64827 -9.88574 -9.83173 -9.59892 -9.53617 -8.41225 -0.44836 0.69276 0.88102 1.25240 1.57785 1.66449 1.73156 1.88158 1.92938 2.08158 2.13106 2.49366 2.61883 3.26321 3.39877 3.45823 3.62379 3.80812 3.84193 3.95067 4.00445 4.07689 4.10654 4.15597 4.16337 4.26504 4.31952 4.34660 4.43666 4.48893 4.52631 4.54861 4.61194 4.63567 4.65254 4.68857 4.71625 4.79320 4.87632 4.92719 4.95780 5.00247 5.10092 5.14366 5.28137 5.36867 5.40926 5.44731 5.49735 6.08500 6.26012 6.32445 6.59535 6.75269 6.78723 7.18850 7.36436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C -0.006 4.006 4 N -0.613 5.613 5 Si 0.936 3.064 6 H -0.230 1.230 7 H -0.245 1.245 8 H -0.233 1.233 9 C 0.553 3.447 10 O -0.523 6.523 11 N -0.621 5.621 12 C 0.099 3.901 13 C -0.126 4.126 14 C -0.115 4.115 15 H 0.089 0.911 16 C 0.127 3.873 17 N -0.614 5.614 18 C 0.073 3.927 19 C 0.546 3.454 20 O -0.549 6.549 21 C -0.309 4.309 22 C 0.063 3.937 23 C -0.006 4.006 24 C -0.136 4.136 25 C -0.217 4.217 26 C 0.028 3.972 27 N -0.510 5.510 28 H 0.417 0.583 29 C 0.117 3.883 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.341 0.659 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.166 0.834 49 H 0.069 0.931 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -3.410 -7.415 9.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.256 4.256 4 N -0.225 5.225 5 Si 0.750 3.250 6 H -0.153 1.153 7 H -0.168 1.168 8 H -0.155 1.155 9 C 0.340 3.660 10 O -0.398 6.398 11 N -0.356 5.356 12 C -0.025 4.025 13 C -0.163 4.163 14 C -0.136 4.136 15 H 0.108 0.892 16 C 0.004 3.996 17 N -0.346 5.346 18 C -0.070 4.070 19 C 0.342 3.658 20 O -0.431 6.431 21 C -0.330 4.330 22 C 0.043 3.957 23 C -0.117 4.117 24 C -0.162 4.162 25 C -0.241 4.241 26 C -0.110 4.110 27 N -0.106 5.106 28 H 0.259 0.741 29 C -0.006 4.006 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.159 0.841 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.157 0.843 48 H 0.183 0.817 49 H 0.087 0.913 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.094 -3.060 -6.273 7.634 hybrid contribution -0.041 0.288 -0.731 0.787 sum 3.053 -2.772 -7.004 8.128 Atomic orbital electron populations 1.21607 0.90517 1.03722 1.03106 1.20652 0.99007 0.92704 0.97624 1.30088 0.94169 0.98461 1.02838 1.68218 1.07007 1.16103 1.31206 0.85739 0.83423 0.79734 0.76102 1.15259 1.16771 1.15523 1.19827 0.79438 0.77179 0.89521 1.90708 1.55427 1.59011 1.34615 1.48398 1.17693 1.58114 1.11440 1.22064 0.90805 1.00672 0.88921 1.22761 0.97002 1.01031 0.95547 1.22776 0.94766 1.00933 0.95083 0.89247 1.21332 0.79340 0.97711 1.01260 1.47791 1.08419 1.48163 1.30214 1.21951 0.99924 0.96769 0.88316 1.17248 0.87680 0.78763 0.82109 1.90884 1.77189 1.45743 1.29273 1.21858 0.93421 1.12252 1.05515 1.20897 0.97244 0.88100 0.89491 1.18226 0.96892 1.03740 0.92798 1.21569 1.01538 1.01007 0.92045 1.20882 1.00403 1.04047 0.98771 1.22170 1.01601 1.02135 0.85126 1.42615 1.26720 1.34573 1.06712 0.74084 1.22090 0.90257 0.98157 0.90081 0.90890 0.91290 0.91174 0.87667 0.84123 0.90983 0.91614 0.89951 0.90216 0.89985 0.89417 0.92330 0.90747 0.90487 0.84440 0.83577 0.84000 0.84282 0.81716 0.91309 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 8.55 37.16 0.32 0.28 16 2 C -0.08 -0.04 2.22 -92.92 -0.21 -0.25 16 3 C -0.01 0.00 4.83 -13.90 -0.07 -0.07 16 4 N -0.61 -1.60 12.91 56.22 0.73 -0.87 16 5 Si 0.94 -1.70 29.40 -169.99 -5.00 -6.70 16 6 H -0.23 0.37 7.11 56.52 0.40 0.77 16 7 H -0.25 0.21 7.11 56.52 0.40 0.61 16 8 H -0.23 0.52 7.11 56.52 0.40 0.92 16 9 C 0.55 2.10 6.24 -10.99 -0.07 2.04 16 10 O -0.52 -4.24 16.51 5.55 0.09 -4.15 16 11 N -0.62 -0.99 3.33 -170.50 -0.57 -1.56 16 12 C 0.10 -0.18 6.08 -3.04 -0.02 -0.20 16 13 C -0.13 0.37 4.97 -24.87 -0.12 0.24 16 14 C -0.12 0.08 3.27 -88.47 -0.29 -0.21 16 15 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 16 C 0.13 -0.17 4.92 -4.04 -0.02 -0.19 16 17 N -0.61 0.76 2.82 -185.04 -0.52 0.24 16 18 C 0.07 -0.30 9.94 59.84 0.59 0.30 16 19 C 0.55 0.77 6.21 -15.01 -0.09 0.68 16 20 O -0.55 -2.65 12.27 5.12 0.06 -2.58 16 21 C -0.31 0.05 9.03 -39.27 -0.35 -0.31 16 22 C 0.06 0.03 9.77 -39.21 -0.38 -0.36 16 23 C -0.01 -0.02 5.94 -83.90 -0.50 -0.51 16 24 C -0.14 -0.34 10.86 -38.99 -0.42 -0.77 16 25 C -0.22 -0.56 10.81 -39.98 -0.43 -0.99 16 26 C 0.03 0.06 11.90 -16.80 -0.20 -0.14 16 27 N -0.51 -1.43 4.49 -10.56 -0.05 -1.48 16 28 H 0.42 0.98 6.14 -40.82 -0.25 0.73 16 29 C 0.12 0.14 6.36 -2.53 -0.02 0.13 16 30 H 0.07 0.18 8.03 -51.93 -0.42 -0.24 16 31 H 0.07 -0.14 8.07 -51.93 -0.42 -0.56 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.11 -0.29 6.97 -51.93 -0.36 -0.65 16 34 H 0.34 0.26 8.23 -40.82 -0.34 -0.08 16 35 H 0.07 -0.25 8.00 -51.93 -0.42 -0.67 16 36 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 37 H 0.08 -0.28 8.13 -51.93 -0.42 -0.70 16 38 H 0.08 -0.33 7.39 -51.93 -0.38 -0.72 16 39 H 0.08 -0.26 7.97 -51.92 -0.41 -0.67 16 40 H 0.09 0.03 7.42 -51.93 -0.39 -0.35 16 41 H 0.06 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.07 -0.39 6.23 -51.93 -0.32 -0.71 16 43 H 0.08 -0.36 5.99 -51.93 -0.31 -0.68 16 44 H 0.14 -0.38 6.02 -52.49 -0.32 -0.69 16 45 H 0.15 -0.36 8.06 -52.49 -0.42 -0.78 16 46 H 0.14 0.05 8.06 -52.48 -0.42 -0.37 16 47 H 0.14 0.13 8.06 -52.48 -0.42 -0.29 16 48 H 0.17 -0.07 8.06 -52.49 -0.42 -0.50 16 49 H 0.07 0.02 8.04 -51.93 -0.42 -0.40 16 50 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 LS Contribution 400.44 15.07 6.03 6.03 Total: 0.00 -10.12 400.44 -9.27 -19.39 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -7.77 Total: -8.01 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.28 Total: -0.33 kcal Atomic # 7 Polarization: -3.25 SS G_CDS: -0.41 Total: -3.66 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: 0.15 Total: -6.73 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: -5.00 Total: -6.70 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -10.12 -9.27 -19.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737965133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.769 kcal (2) G-P(sol) polarization free energy of solvation -10.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds