Wall clock time and date at job start Wed Apr 1 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46481 * 2 1 4 4 N 1.27937 * 120.00145 * 95.00191 * 3 2 1 5 5 Si 1.86799 * 119.99885 * 274.99346 * 3 2 1 6 6 H 1.48503 * 109.47034 * 60.00524 * 5 3 2 7 7 H 1.48504 * 109.47380 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47401 * 300.00313 * 5 3 2 9 9 C 1.50694 * 109.46889 * 119.99285 * 2 1 3 10 10 O 1.21285 * 120.00398 * 333.75823 * 9 2 1 11 11 N 1.34781 * 119.99847 * 153.75784 * 9 2 1 12 12 C 1.47019 * 125.64687 * 354.98041 * 11 9 2 13 13 C 1.54367 * 107.28901 * 178.87039 * 12 11 9 14 14 C 1.55159 * 102.92076 * 337.85950 * 13 12 11 15 15 H 1.08998 * 111.00427 * 277.35954 * 14 13 12 16 16 C 1.52998 * 111.00555 * 153.54770 * 14 13 12 17 17 N 1.46504 * 109.47463 * 69.57908 * 16 14 13 18 18 C 1.46496 * 120.00242 * 270.00544 * 17 16 14 19 19 C 1.34782 * 119.99435 * 89.99810 * 17 16 14 20 20 O 1.21774 * 120.00203 * 0.02562 * 19 17 16 21 21 C 1.41516 * 119.99498 * 180.02562 * 19 17 16 22 22 C 1.35621 * 119.99938 * 188.26740 * 21 19 17 23 23 C 1.41674 * 119.99819 * 31.88847 * 22 21 19 24 24 C 1.38285 * 126.25799 * 187.21301 * 23 22 21 25 25 C 1.39780 * 107.07743 * 180.02562 * 24 23 22 26 26 C 1.35501 * 107.91339 * 0.02562 * 25 24 23 27 27 N 1.35750 * 108.90784 * 0.26333 * 26 25 24 28 28 H 0.97006 * 125.69025 * 179.73348 * 27 26 25 29 29 C 1.47423 * 125.64975 * 174.93498 * 11 9 2 30 30 H 1.08998 * 109.47611 * 305.00740 * 1 2 3 31 31 H 1.09000 * 109.46855 * 65.01469 * 1 2 3 32 32 H 1.09003 * 109.46840 * 185.00746 * 1 2 3 33 33 H 1.08995 * 109.47298 * 240.00128 * 2 1 3 34 34 H 0.97009 * 120.00409 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.88210 * 298.32160 * 12 11 9 36 36 H 1.09001 * 109.88645 * 59.32970 * 12 11 9 37 37 H 1.09004 * 110.75915 * 219.49372 * 13 12 11 38 38 H 1.08997 * 110.71063 * 96.20283 * 13 12 11 39 39 H 1.09008 * 109.47038 * 309.58291 * 16 14 13 40 40 H 1.08998 * 109.47531 * 189.58260 * 16 14 13 41 41 H 1.09002 * 109.46914 * 269.99819 * 18 17 16 42 42 H 1.08998 * 109.46915 * 29.99365 * 18 17 16 43 43 H 1.08996 * 109.47103 * 149.99722 * 18 17 16 44 44 H 1.08000 * 120.00092 * 8.25738 * 21 19 17 45 45 H 1.08001 * 119.99974 * 211.89504 * 22 21 19 46 46 H 1.08004 * 126.45763 * 0.02562 * 24 23 22 47 47 H 1.08006 * 126.04309 * 179.97438 * 25 24 23 48 48 H 1.07996 * 125.54231 * 179.97438 * 26 25 24 49 49 H 1.08994 * 110.36900 * 85.32583 * 29 11 9 50 50 H 1.09003 * 110.36893 * 323.00609 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3365 1.9919 1.1037 5 14 2.2107 2.3484 -1.6116 6 1 0.8883 2.4353 -2.2817 7 1 2.7201 3.7169 -1.3414 8 1 3.1660 1.6302 -2.4930 9 6 2.0323 -0.7102 1.2305 10 8 1.3462 -0.7508 2.2299 11 7 3.2440 -1.3004 1.2206 12 6 4.1304 -1.4177 0.0535 13 6 5.4125 -2.1387 0.5217 14 6 5.4140 -1.8846 2.0524 15 1 5.8319 -0.9053 2.2854 16 6 6.1708 -2.9903 2.7911 17 7 7.6015 -2.8856 2.4937 18 6 8.1658 -3.6028 1.3476 19 6 8.3984 -2.1294 3.2744 20 8 7.9294 -1.5335 4.2272 21 6 9.7803 -2.0278 2.9868 22 6 10.6112 -1.4080 3.8613 23 6 10.3431 -1.4602 5.2515 24 6 11.0154 -0.7661 6.2407 25 6 10.4253 -1.1135 7.4593 26 6 9.4268 -1.9929 7.2032 27 7 9.3703 -2.2169 5.8655 28 1 8.7466 -2.8090 5.4167 29 6 3.9004 -1.9344 2.3783 30 1 -0.3634 0.5895 0.8417 31 1 -0.3633 0.4341 -0.9315 32 1 -0.3633 -1.0238 0.0897 33 1 1.8934 -0.5138 -0.8899 34 1 2.6594 2.9066 1.1038 35 1 3.6408 -2.0005 -0.7267 36 1 4.3780 -0.4260 -0.3251 37 1 6.2948 -1.6987 0.0569 38 1 5.3544 -3.2059 0.3081 39 1 5.8022 -3.9630 2.4652 40 1 6.0140 -2.8833 3.8644 41 1 8.4901 -4.5944 1.6634 42 1 7.4080 -3.6988 0.5702 43 1 9.0193 -3.0488 0.9568 44 1 10.1733 -2.4441 2.0710 45 1 11.4772 -0.8746 3.4980 46 1 11.8408 -0.0842 6.0984 47 1 10.7148 -0.7465 8.4330 48 1 8.7839 -2.4457 7.9434 49 1 3.5689 -2.9674 2.4837 50 1 3.6897 -1.3728 3.2885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737965133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:59 Heat of formation + Delta-G solvation = 49.877869 kcal Electronic energy + Delta-G solvation = -30933.625706 eV Core-core repulsion = 26850.597532 eV Total energy + Delta-G solvation = -4083.028174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.32155 -41.42668 -40.75101 -38.95326 -37.07250 -36.63736 -34.83292 -33.53494 -32.82392 -31.88248 -30.71044 -29.46170 -28.20427 -27.16503 -25.86693 -24.51225 -23.73269 -22.21524 -21.74017 -21.30595 -21.24613 -20.12487 -19.68940 -18.82904 -18.55534 -17.93211 -17.51427 -17.35270 -16.56000 -16.38723 -16.10450 -15.76338 -15.30565 -15.11042 -14.99590 -14.70004 -14.63629 -14.52116 -14.47583 -14.17158 -14.06909 -13.92910 -13.87548 -13.60784 -13.52194 -13.25521 -13.15241 -13.09118 -12.94801 -12.74955 -12.67853 -12.42453 -12.29236 -12.25108 -11.90602 -11.68438 -11.50555 -11.05769 -10.97850 -10.69547 -9.91998 -9.88876 -9.71347 -9.61463 -8.49689 -0.47020 0.72995 0.96888 1.42805 1.60995 1.63686 1.72953 1.85914 1.91955 1.97929 2.12982 2.41553 2.54787 3.25422 3.43693 3.52826 3.69571 3.79894 3.93252 4.03909 4.05826 4.15628 4.20513 4.23120 4.26111 4.29604 4.34454 4.43016 4.45975 4.48581 4.58784 4.63832 4.65350 4.71757 4.77229 4.80556 4.84744 4.87098 4.91553 4.96088 4.99400 5.05286 5.11671 5.15933 5.24090 5.32320 5.35486 5.36781 5.55615 5.98342 6.14344 6.37875 6.47343 6.62846 6.80392 7.14982 7.16471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.009 4.009 4 N -0.663 5.663 5 Si 0.987 3.013 6 H -0.227 1.227 7 H -0.266 1.266 8 H -0.212 1.212 9 C 0.541 3.459 10 O -0.583 6.583 11 N -0.622 5.622 12 C 0.088 3.912 13 C -0.114 4.114 14 C -0.102 4.102 15 H 0.054 0.946 16 C 0.129 3.871 17 N -0.606 5.606 18 C 0.065 3.935 19 C 0.535 3.465 20 O -0.593 6.593 21 C -0.299 4.299 22 C 0.048 3.952 23 C -0.019 4.019 24 C -0.158 4.158 25 C -0.234 4.234 26 C 0.009 3.991 27 N -0.516 5.516 28 H 0.415 0.585 29 C 0.114 3.886 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.169 0.831 45 H 0.175 0.825 46 H 0.158 0.842 47 H 0.149 0.851 48 H 0.183 0.817 49 H 0.080 0.920 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -4.656 -11.469 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.104 4.104 3 C -0.255 4.255 4 N -0.276 5.276 5 Si 0.799 3.201 6 H -0.149 1.149 7 H -0.189 1.189 8 H -0.134 1.134 9 C 0.331 3.669 10 O -0.462 6.462 11 N -0.356 5.356 12 C -0.033 4.033 13 C -0.152 4.152 14 C -0.123 4.123 15 H 0.073 0.927 16 C 0.006 3.994 17 N -0.336 5.336 18 C -0.076 4.076 19 C 0.331 3.669 20 O -0.478 6.478 21 C -0.320 4.320 22 C 0.027 3.973 23 C -0.130 4.130 24 C -0.183 4.183 25 C -0.258 4.258 26 C -0.130 4.130 27 N -0.111 5.111 28 H 0.258 0.742 29 C -0.009 4.009 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.187 0.813 45 H 0.192 0.808 46 H 0.176 0.824 47 H 0.167 0.833 48 H 0.200 0.800 49 H 0.098 0.902 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.216 -4.355 -10.373 12.014 hybrid contribution -0.418 0.640 0.531 0.931 sum 3.798 -3.714 -9.842 11.185 Atomic orbital electron populations 1.21606 0.90594 1.03333 1.03295 1.20912 0.99070 0.92929 0.97449 1.30787 0.92214 0.98342 1.04188 1.68288 1.09217 1.16889 1.33235 0.85069 0.83728 0.77888 0.73463 1.14881 1.18947 1.13360 1.20556 0.79603 0.76824 0.89947 1.90668 1.57333 1.61293 1.36949 1.48559 1.17439 1.57001 1.12611 1.22406 0.90870 1.01840 0.88203 1.22795 0.96983 1.02617 0.92778 1.22552 0.92852 0.99429 0.97464 0.92709 1.21311 0.79610 0.98680 0.99840 1.47850 1.08066 1.47202 1.30488 1.22228 1.00952 0.96917 0.87523 1.17649 0.88661 0.78694 0.81898 1.90871 1.77999 1.47719 1.31221 1.22134 0.92400 1.11045 1.06416 1.21282 0.98699 0.88705 0.88566 1.18723 0.96645 1.03525 0.94127 1.21886 1.02463 1.01822 0.92134 1.21164 1.00761 1.04377 0.99467 1.22558 1.02194 1.02688 0.85521 1.42699 1.26786 1.34731 1.06927 0.74228 1.22074 0.91900 0.97982 0.88951 0.93982 0.88273 0.91335 0.83494 0.83740 0.88011 0.91058 0.88594 0.87678 0.87170 0.92055 0.91422 0.88731 0.89314 0.81349 0.80779 0.82427 0.83301 0.80017 0.90166 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.13 8.55 71.98 0.62 0.48 16 2 C -0.08 -0.06 2.22 -12.28 -0.03 -0.09 16 3 C -0.01 -0.01 4.83 88.68 0.43 0.42 16 4 N -0.66 -4.84 12.91 24.11 0.31 -4.53 16 5 Si 0.99 -5.41 29.40 68.60 2.02 -3.40 16 6 H -0.23 1.34 7.11 99.48 0.71 2.04 16 7 H -0.27 0.58 7.11 99.48 0.71 1.29 16 8 H -0.21 1.79 7.11 99.48 0.71 2.50 16 9 C 0.54 5.01 6.24 87.65 0.55 5.56 16 10 O -0.58 -11.60 16.51 -3.05 -0.05 -11.65 16 11 N -0.62 -2.44 3.33 -811.72 -2.70 -5.14 16 12 C 0.09 -0.49 6.08 86.74 0.53 0.04 16 13 C -0.11 0.93 4.97 31.80 0.16 1.09 16 14 C -0.10 0.06 3.27 -9.40 -0.03 0.03 16 15 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 16 C 0.13 -0.30 4.92 86.38 0.42 0.12 16 17 N -0.61 1.93 2.82 -857.53 -2.42 -0.49 16 18 C 0.07 -0.72 9.94 127.77 1.27 0.55 16 19 C 0.53 1.76 6.21 85.05 0.53 2.29 16 20 O -0.59 -7.09 12.27 -4.59 -0.06 -7.14 16 21 C -0.30 0.33 9.03 22.47 0.20 0.53 16 22 C 0.05 0.04 9.77 22.51 0.22 0.26 16 23 C -0.02 -0.13 5.94 39.08 0.23 0.10 16 24 C -0.16 -1.03 10.86 22.65 0.25 -0.78 16 25 C -0.23 -1.64 10.81 22.01 0.24 -1.40 16 26 C 0.01 0.06 11.90 83.45 0.99 1.05 16 27 N -0.52 -3.93 4.49 -187.33 -0.84 -4.77 16 28 H 0.42 2.90 6.14 -92.70 -0.57 2.33 16 29 C 0.11 0.52 6.36 86.86 0.55 1.07 16 30 H 0.04 0.31 8.03 -2.39 -0.02 0.29 16 31 H 0.10 -0.54 8.07 -2.39 -0.02 -0.56 16 32 H 0.07 0.08 8.14 -2.39 -0.02 0.07 16 33 H 0.15 -1.21 6.97 -2.39 -0.02 -1.23 16 34 H 0.35 1.33 8.23 -92.70 -0.76 0.57 16 35 H 0.10 -1.10 8.00 -2.39 -0.02 -1.12 16 36 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.10 -0.96 8.13 -2.38 -0.02 -0.97 16 38 H 0.10 -1.32 7.39 -2.39 -0.02 -1.34 16 39 H 0.11 -0.87 7.97 -2.38 -0.02 -0.89 16 40 H 0.06 0.21 7.42 -2.39 -0.02 0.19 16 41 H 0.07 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.09 -1.38 6.23 -2.39 -0.01 -1.39 16 43 H 0.09 -1.14 5.99 -2.39 -0.01 -1.16 16 44 H 0.17 -1.36 6.02 -2.91 -0.02 -1.38 16 45 H 0.17 -1.03 8.06 -2.91 -0.02 -1.06 16 46 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 47 H 0.15 0.53 8.06 -2.91 -0.02 0.51 16 48 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 49 H 0.08 0.15 8.04 -2.39 -0.02 0.13 16 50 H 0.04 0.49 8.09 -2.39 -0.02 0.47 16 Total: 0.00 -30.78 400.44 3.77 -27.01 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 0.38 Total: -1.20 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 7.12 Total: 11.31 kcal Atomic # 7 Polarization: -9.28 SS G_CDS: -5.65 Total: -14.93 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.11 Total: -18.79 kcal Atomic # 14 Polarization: -5.41 SS G_CDS: 2.02 Total: -3.40 kcal Total: -30.78 3.77 -27.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737965133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.889 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds