Wall clock time and date at job start Wed Apr 1 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47159 * 2 1 4 4 O 1.21276 * 119.99357 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00199 * 179.72555 * 3 2 1 6 6 C 1.46505 * 120.00001 * 0.27319 * 5 3 2 7 7 C 1.39286 * 120.00125 * 180.28029 * 5 3 2 8 8 C 1.38851 * 120.16964 * 89.72436 * 7 5 3 9 9 C 1.38022 * 120.06841 * 179.72353 * 8 7 5 10 10 C 1.38567 * 120.40601 * 0.55355 * 9 8 7 11 11 C 1.37794 * 120.32681 * 359.72008 * 10 9 8 12 12 C 1.39682 * 119.92656 * 0.02562 * 11 10 9 13 13 C 1.47521 * 120.20294 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00211 * 233.93553 * 13 12 11 15 15 N 1.34782 * 120.00129 * 53.92799 * 13 12 11 16 16 C 1.46965 * 120.59225 * 5.65866 * 15 13 12 17 17 C 1.53811 * 108.39710 * 124.75972 * 16 15 13 18 18 N 1.46960 * 108.58068 * 49.63597 * 17 16 15 19 19 C 1.36939 * 120.59562 * 124.62064 * 18 17 16 20 20 H 1.07992 * 120.00216 * 215.64486 * 19 18 17 21 21 C 1.38812 * 119.99302 * 35.65122 * 19 18 17 22 22 N 1.31618 * 120.00470 * 355.91955 * 21 19 18 23 23 Si 1.86807 * 119.99607 * 175.92383 * 21 19 18 24 24 H 1.48501 * 109.47258 * 89.99813 * 23 21 19 25 25 H 1.48505 * 109.46813 * 209.99732 * 23 21 19 26 26 H 1.48493 * 109.47174 * 329.99682 * 23 21 19 27 27 C 1.46971 * 118.81231 * 304.64949 * 18 17 16 28 28 C 1.46962 * 120.59349 * 185.94441 * 15 13 12 29 29 H 1.09001 * 109.47369 * 299.99934 * 1 2 3 30 30 H 1.08996 * 109.47341 * 60.00028 * 1 2 3 31 31 H 1.09005 * 109.47215 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47369 * 240.00066 * 2 1 3 33 33 H 1.08996 * 109.47341 * 119.99972 * 2 1 3 34 34 H 1.09000 * 109.46638 * 90.00071 * 6 5 3 35 35 H 1.09002 * 109.47070 * 209.99894 * 6 5 3 36 36 H 1.08996 * 109.46936 * 330.00668 * 6 5 3 37 37 H 1.08002 * 119.96085 * 359.97015 * 8 7 5 38 38 H 1.08001 * 119.79843 * 180.27936 * 9 8 7 39 39 H 1.07994 * 119.83197 * 179.74865 * 10 9 8 40 40 H 1.07999 * 120.03564 * 179.97438 * 11 10 9 41 41 H 1.08997 * 109.60742 * 244.54391 * 16 15 13 42 42 H 1.09005 * 109.61072 * 5.04902 * 16 15 13 43 43 H 1.08997 * 109.74051 * 289.84705 * 17 16 15 44 44 H 1.09000 * 109.53471 * 169.30484 * 17 16 15 45 45 H 0.97002 * 119.99939 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.60709 * 295.48157 * 27 18 17 47 47 H 1.09002 * 109.60963 * 174.96674 * 27 18 17 48 48 H 1.08998 * 109.61064 * 354.93820 * 28 15 13 49 49 H 1.08997 * 109.61409 * 115.45736 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 0.0056 6 6 4.3094 0.5537 0.0056 7 6 3.8216 2.9804 0.0115 8 6 4.0443 3.6363 1.2148 9 6 4.5098 4.9357 1.2183 10 6 4.7473 5.5988 0.0250 11 6 4.5264 4.9655 -1.1788 12 6 4.0605 3.6489 -1.1983 13 6 3.8225 2.9649 -2.4835 14 8 2.7410 2.4582 -2.7115 15 7 4.8040 2.9017 -3.4052 16 6 6.1521 3.3993 -3.0975 17 6 7.1589 2.2657 -3.3565 18 7 6.8984 1.7036 -4.6892 19 6 7.8953 1.6403 -5.6259 20 1 7.6656 1.7931 -6.6700 21 6 9.2009 1.3796 -5.2333 22 7 9.4949 1.2729 -3.9548 23 14 10.5409 1.1803 -6.5196 24 1 11.1538 2.5024 -6.8049 25 1 11.5818 0.2517 -6.0101 26 1 9.9522 0.6281 -7.7660 27 6 5.5487 1.2111 -4.9988 28 6 4.5434 2.3397 -4.7379 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.5492 0.2808 -1.0221 35 1 5.2201 0.8543 0.5237 36 1 3.8671 -0.3024 0.5151 37 1 3.8570 3.1279 2.1491 38 1 4.6859 5.4402 2.1568 39 1 5.1076 6.6168 0.0385 40 1 4.7127 5.4869 -2.1060 41 1 6.3828 4.2506 -3.7380 42 1 6.2005 3.7018 -2.0514 43 1 7.0400 1.4882 -2.6019 44 1 8.1731 2.6633 -3.3190 45 1 10.4073 1.0904 -3.6805 46 1 5.3152 0.3585 -4.3611 47 1 5.4996 0.9123 -6.0459 48 1 3.5293 1.9420 -4.7753 49 1 4.6623 3.1172 -5.4925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330938816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:45 Heat of formation + Delta-G solvation = -19.842310 kcal Electronic energy + Delta-G solvation = -31999.059981 eV Core-core repulsion = 27926.664252 eV Total energy + Delta-G solvation = -4072.395729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01798 -40.74374 -39.32958 -38.33757 -36.62564 -35.61700 -33.83735 -33.51126 -32.29896 -31.55745 -31.15723 -28.74991 -27.73710 -26.20875 -25.63628 -24.64301 -24.19880 -23.14699 -22.12509 -20.72901 -20.08153 -19.06941 -18.38061 -17.92263 -17.70062 -17.44574 -17.18061 -16.69020 -16.29265 -16.07006 -15.67320 -15.43053 -15.34778 -15.13161 -15.04316 -14.75297 -14.58118 -14.51822 -14.02169 -13.83894 -13.64040 -13.55279 -13.33273 -13.11152 -12.93630 -12.90855 -12.80452 -12.60904 -12.49314 -12.41201 -12.23749 -12.08709 -12.03540 -11.95318 -11.73970 -11.02935 -10.91350 -10.56460 -9.98147 -9.94242 -9.88760 -9.77581 -8.56592 -7.87699 -5.47020 -0.05961 0.25081 1.48604 1.50974 1.57680 1.59195 1.60850 1.92842 2.01270 2.49464 2.65854 3.27729 3.44106 3.60018 3.62309 3.85468 4.05991 4.09955 4.13974 4.18717 4.20894 4.21626 4.30828 4.36016 4.39572 4.44587 4.51339 4.55791 4.61755 4.62453 4.73089 4.77678 4.79031 4.86538 4.91888 5.00422 5.03747 5.23200 5.24560 5.28233 5.33094 5.41097 5.53942 5.54969 5.62964 5.70763 5.94892 6.24408 6.38797 6.42829 7.06396 7.14035 7.16837 7.76388 8.33280 9.14493 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003494 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.382239 B = 8012.589177 C = 8822.247689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.517 3.483 4 O -0.571 6.571 5 N -0.582 5.582 6 C 0.080 3.920 7 C 0.157 3.843 8 C -0.122 4.122 9 C -0.086 4.086 10 C -0.112 4.112 11 C -0.092 4.092 12 C -0.143 4.143 13 C 0.556 3.444 14 O -0.575 6.575 15 N -0.593 5.593 16 C 0.095 3.905 17 C 0.166 3.834 18 N -0.608 5.608 19 C -0.270 4.270 20 H 0.067 0.933 21 C -0.035 4.035 22 N -0.929 5.929 23 Si 0.968 3.032 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.138 3.862 28 C 0.104 3.896 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.068 0.932 42 H 0.093 0.907 43 H -0.005 1.005 44 H 0.089 0.911 45 H 0.253 0.747 46 H 0.010 0.990 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 2.994 12.954 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.309 3.691 4 O -0.449 6.449 5 N -0.313 5.313 6 C -0.061 4.061 7 C 0.066 3.934 8 C -0.141 4.141 9 C -0.104 4.104 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.148 4.148 13 C 0.345 3.655 14 O -0.456 6.456 15 N -0.324 5.324 16 C -0.029 4.029 17 C 0.040 3.960 18 N -0.332 5.332 19 C -0.400 4.400 20 H 0.084 0.916 21 C -0.231 4.231 22 N -0.574 5.574 23 Si 0.796 3.204 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.011 3.989 28 C -0.020 4.020 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.162 0.838 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.013 0.987 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.479 3.114 12.857 16.274 hybrid contribution 0.916 -0.324 -1.083 1.455 sum -8.563 2.790 11.774 14.824 Atomic orbital electron populations 1.21507 0.92948 1.02786 1.01694 1.21724 0.98603 0.91282 1.05913 1.21488 0.80806 0.93139 0.73699 1.90640 1.55590 1.48351 1.50276 1.45309 1.06707 1.04882 1.74354 1.22029 0.93241 0.89027 1.01825 1.17691 0.97844 0.85650 0.92247 1.21522 0.99844 0.96200 0.96540 1.21633 0.95596 0.93169 1.00010 1.21532 0.98913 1.01589 0.90953 1.21396 0.96951 0.92230 1.00547 1.20263 1.05127 0.96927 0.92454 1.18620 0.83477 0.79235 0.84152 1.90725 1.26163 1.48803 1.79866 1.48075 1.10825 1.59991 1.13519 1.22688 0.80864 0.98036 1.01280 1.21205 0.97926 0.91766 0.85097 1.44145 1.06636 1.70223 1.12189 1.19450 0.88185 1.42699 0.89649 0.91580 1.25990 1.00539 0.98828 0.97749 1.69992 1.19091 1.53187 1.15087 0.85280 0.78739 0.77498 0.78913 1.20888 1.21968 1.19761 1.21312 0.85103 0.93194 0.99291 1.22065 0.99641 0.97244 0.83012 0.92625 0.94696 0.89107 0.88485 0.85342 0.94631 0.89627 0.86874 0.83763 0.81386 0.81631 0.84733 0.91337 0.88924 0.98659 0.89265 0.93716 0.97193 0.90784 0.90069 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.20 71.98 0.66 -2.22 16 2 C -0.14 -2.99 4.97 29.85 0.15 -2.84 16 3 C 0.52 16.38 6.61 87.66 0.58 16.96 16 4 O -0.57 -22.97 15.95 -3.02 -0.05 -23.02 16 5 N -0.58 -17.06 2.15 -653.86 -1.41 -18.47 16 6 C 0.08 1.84 10.24 127.77 1.31 3.15 16 7 C 0.16 4.78 4.43 38.60 0.17 4.95 16 8 C -0.12 -2.84 9.96 22.37 0.22 -2.62 16 9 C -0.09 -1.55 10.03 22.30 0.22 -1.33 16 10 C -0.11 -2.16 10.02 22.24 0.22 -1.94 16 11 C -0.09 -2.42 7.73 22.51 0.17 -2.25 16 12 C -0.14 -4.74 4.63 -19.99 -0.09 -4.83 16 13 C 0.56 21.59 6.79 86.69 0.59 22.18 16 14 O -0.57 -25.91 15.19 -3.99 -0.06 -25.98 16 15 N -0.59 -22.40 2.94 -820.92 -2.41 -24.81 16 16 C 0.10 3.48 5.80 86.56 0.50 3.98 16 17 C 0.17 7.61 5.49 86.56 0.47 8.09 16 18 N -0.61 -29.50 2.97 -697.35 -2.07 -31.57 16 19 C -0.27 -14.12 9.55 84.03 0.80 -13.32 16 20 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 21 C -0.03 -1.83 5.32 84.86 0.45 -1.38 16 22 N -0.93 -51.04 10.60 21.65 0.23 -50.81 16 23 Si 0.97 42.46 29.56 68.60 2.03 44.49 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.14 5.79 6.67 86.42 0.58 6.36 16 28 C 0.10 3.95 6.60 86.42 0.57 4.52 16 29 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 30 H 0.03 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.10 2.11 8.11 -2.39 -0.02 2.10 16 33 H 0.13 1.80 7.40 -2.39 -0.02 1.79 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 36 H 0.11 1.72 6.43 -2.39 -0.02 1.71 16 37 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.13 3.31 7.75 -2.91 -0.02 3.28 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.09 3.03 5.30 -2.38 -0.01 3.01 16 43 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.09 4.56 5.84 -2.39 -0.01 4.54 16 45 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.07 2.95 7.93 -2.39 -0.02 2.93 16 48 H 0.08 3.08 6.99 -2.39 -0.02 3.06 16 49 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -75.79 393.89 4.78 -71.01 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.95 Total: 21.68 kcal Atomic # 6 Polarization: 29.89 SS G_CDS: 7.59 Total: 37.48 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.66 Total: -125.66 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.11 Total: -49.00 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.79 4.78 -71.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330938816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.164 kcal (2) G-P(sol) polarization free energy of solvation -75.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds