Wall clock time and date at job start Wed Apr 1 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99953 * 2 1 4 4 O 1.42899 * 109.47093 * 134.99755 * 3 2 1 5 5 C 1.35653 * 116.99771 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.53987 * 359.71556 * 5 4 3 7 7 C 1.38307 * 118.43572 * 180.30042 * 6 5 4 8 8 C 1.38760 * 119.44836 * 359.95734 * 7 6 5 9 9 N 1.31378 * 121.06543 * 0.04545 * 8 7 6 10 10 C 1.32852 * 121.69764 * 359.97438 * 9 8 7 11 11 C 1.47829 * 119.78607 * 180.02562 * 10 9 8 12 12 O 1.21559 * 120.00423 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00023 * 359.97438 * 11 10 9 14 14 C 1.46502 * 120.00214 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47009 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.49525 * 55.00260 * 15 14 13 17 17 C 1.53040 * 109.49401 * 175.06338 * 15 14 13 18 18 C 1.53040 * 109.53244 * 181.31674 * 17 15 14 19 19 C 1.53189 * 109.31411 * 298.63530 * 18 17 15 20 20 N 1.46927 * 108.77597 * 54.63950 * 19 18 17 21 21 C 1.36937 * 120.63443 * 126.38580 * 20 19 18 22 22 H 1.08000 * 119.99899 * 332.58556 * 21 20 19 23 23 C 1.38812 * 120.00166 * 152.57753 * 21 20 19 24 24 N 1.31621 * 120.00011 * 159.34477 * 23 21 20 25 25 Si 1.86797 * 119.99900 * 339.35133 * 23 21 20 26 26 H 1.48496 * 109.47356 * 92.94422 * 25 23 21 27 27 H 1.48500 * 109.46643 * 212.94375 * 25 23 21 28 28 H 1.48505 * 109.47296 * 332.94004 * 25 23 21 29 29 C 1.46931 * 118.76197 * 306.41133 * 20 19 18 30 30 H 1.07999 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99792 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99613 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47089 * 14.99574 * 3 2 1 34 34 H 1.09006 * 109.46738 * 254.99662 * 3 2 1 35 35 H 1.07996 * 120.78247 * 0.26039 * 6 5 4 36 36 H 1.07996 * 120.27403 * 180.02562 * 7 6 5 37 37 H 1.08000 * 119.46780 * 180.02562 * 8 7 6 38 38 H 0.97003 * 119.99606 * 0.02562 * 13 11 10 39 39 H 1.08992 * 109.47162 * 299.99776 * 14 13 11 40 40 H 1.08996 * 109.46963 * 60.00291 * 14 13 11 41 41 H 1.08993 * 109.46192 * 301.34105 * 17 15 14 42 42 H 1.09001 * 109.45907 * 61.31390 * 17 15 14 43 43 H 1.09002 * 109.50037 * 58.59504 * 18 17 15 44 44 H 1.09006 * 109.49700 * 178.68490 * 18 17 15 45 45 H 1.09000 * 109.58366 * 174.42216 * 19 18 17 46 46 H 1.09002 * 109.58884 * 294.70682 * 19 18 17 47 47 H 0.96992 * 119.99914 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.55933 * 293.78242 * 29 20 19 49 49 H 1.09004 * 109.61462 * 173.35840 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9075 2.3434 1.0787 6 6 3.6687 3.4733 0.2991 7 6 4.4956 4.5704 0.4588 8 6 5.5296 4.5166 1.3826 9 7 5.7362 3.4403 2.1070 10 6 4.9694 2.3618 1.9892 11 6 5.2396 1.1736 2.8262 12 8 4.5401 0.1849 2.7221 13 7 6.2615 1.1866 3.7049 14 6 6.5290 0.0093 4.5348 15 6 7.7327 0.2850 5.4383 16 1 7.5539 1.1920 6.0157 17 6 7.9371 -0.8951 6.3909 18 6 9.1206 -0.6060 7.3171 19 6 10.3910 -0.4363 6.4780 20 7 10.1524 0.5987 5.4628 21 6 10.9998 1.6678 5.3437 22 1 11.5555 2.0146 6.2023 23 6 11.1445 2.3057 4.1194 24 7 11.6099 3.5359 4.0692 25 14 10.6787 1.4184 2.5430 26 1 9.2717 1.7383 2.1921 27 1 11.5753 1.8583 1.4440 28 1 10.8189 -0.0469 2.7398 29 6 8.9871 0.4657 4.5778 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4756 1.4867 -0.9927 35 1 2.8574 3.4918 -0.4134 36 1 4.3371 5.4619 -0.1297 37 1 6.1753 5.3733 1.5078 38 1 6.8194 1.9757 3.7882 39 1 5.6557 -0.2077 5.1498 40 1 6.7436 -0.8458 3.8939 41 1 7.0364 -1.0407 6.9872 42 1 8.1400 -1.7970 5.8135 43 1 8.9294 0.3095 7.8770 44 1 9.2512 -1.4366 8.0108 45 1 11.2164 -0.1330 7.1219 46 1 10.6356 -1.3799 5.9903 47 1 11.7107 3.9818 3.2138 48 1 9.1161 -0.4035 3.9327 49 1 8.8860 1.3638 3.9684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342419085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:29 Heat of formation + Delta-G solvation = 9.128332 kcal Electronic energy + Delta-G solvation = -30541.271032 eV Core-core repulsion = 26470.131565 eV Total energy + Delta-G solvation = -4071.139467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.06888 -39.18546 -38.50998 -37.87155 -34.75799 -34.40436 -33.08201 -32.57374 -31.08307 -30.69698 -30.32466 -27.09810 -26.12600 -25.23502 -24.28590 -23.08516 -22.41638 -21.02245 -20.65052 -20.16589 -19.34828 -18.53746 -17.73713 -17.26173 -16.76671 -16.45910 -15.64205 -15.57591 -15.29560 -15.13645 -14.87414 -14.43128 -14.23772 -13.98804 -13.70420 -13.58254 -13.39337 -13.19331 -13.13801 -13.04293 -12.74619 -12.32787 -12.27149 -12.00206 -11.86178 -11.53181 -11.39798 -11.38264 -10.71829 -10.53810 -10.46387 -10.18696 -10.08380 -10.06335 -9.94507 -9.84735 -9.62629 -9.54576 -9.38970 -8.82419 -8.57230 -8.54848 -6.92526 -5.91539 -3.26673 0.52212 1.01649 1.67478 2.84905 2.95452 3.31034 3.38719 3.52887 3.56097 3.80209 4.16742 4.28537 4.41273 4.51276 4.56957 4.63732 4.75964 4.80296 4.89890 4.98473 5.04902 5.24890 5.28129 5.32231 5.39129 5.44385 5.50911 5.62608 5.67945 5.71347 5.87476 5.93816 6.10823 6.11487 6.15790 6.16965 6.20972 6.24553 6.36252 6.40082 6.62050 6.65410 6.68113 6.74512 6.81617 6.96606 7.03075 7.56119 7.87513 8.00414 8.36735 8.44751 8.98406 9.76303 10.14834 11.24371 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003220 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.283924 B = 8694.866519 C =10247.218145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 C 0.078 3.922 4 O -0.267 6.267 5 C 0.136 3.864 6 C -0.179 4.179 7 C -0.108 4.108 8 C 0.062 3.938 9 N -0.414 5.414 10 C 0.047 3.953 11 C 0.569 3.431 12 O -0.524 6.524 13 N -0.708 5.708 14 C 0.126 3.874 15 C -0.119 4.119 16 H 0.081 0.919 17 C -0.100 4.100 18 C -0.134 4.134 19 C 0.146 3.854 20 N -0.606 5.606 21 C -0.259 4.259 22 H 0.085 0.915 23 C 0.026 3.974 24 N -0.907 5.907 25 Si 0.877 3.123 26 H -0.283 1.283 27 H -0.305 1.305 28 H -0.273 1.273 29 C 0.133 3.867 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.414 0.586 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.021 0.979 47 H 0.262 0.738 48 H 0.025 0.975 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.730 -1.604 -7.436 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.002 3.998 4 O -0.177 6.177 5 C 0.085 3.915 6 C -0.205 4.205 7 C -0.128 4.128 8 C -0.099 4.099 9 N -0.125 5.125 10 C -0.092 4.092 11 C 0.353 3.647 12 O -0.399 6.399 13 N -0.360 5.360 14 C 0.002 3.998 15 C -0.140 4.140 16 H 0.099 0.901 17 C -0.139 4.139 18 C -0.173 4.173 19 C 0.021 3.979 20 N -0.329 5.329 21 C -0.387 4.387 22 H 0.103 0.897 23 C -0.173 4.173 24 N -0.550 5.550 25 Si 0.707 3.293 26 H -0.211 1.211 27 H -0.233 1.233 28 H -0.198 1.198 29 C 0.007 3.993 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.251 0.749 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.453 -2.452 -6.865 21.713 hybrid contribution -0.700 0.326 -1.877 2.029 sum -21.153 -2.126 -8.742 22.987 Atomic orbital electron populations 1.23853 0.95317 1.02505 0.99428 1.22639 0.95585 0.97820 1.00641 1.21977 0.88148 0.97339 0.92292 1.86445 1.40805 1.33366 1.57064 1.19990 0.90834 0.86923 0.93759 1.21721 1.03059 0.93548 1.02204 1.22224 0.94381 0.98546 0.97658 1.22806 0.97252 0.96347 0.93455 1.67703 1.24018 0.98861 1.21946 1.20774 0.94187 0.95172 0.99102 1.17591 0.81115 0.85935 0.80021 1.90805 1.48451 1.32892 1.67791 1.45934 1.31947 1.19018 1.39075 1.21479 0.97767 0.87584 0.92928 1.21969 0.94918 0.99792 0.97278 0.90104 1.21342 0.98090 0.97239 0.97185 1.21991 0.96733 1.00784 0.97840 1.20947 0.94917 0.91272 0.90813 1.44343 1.25506 1.24572 1.38463 1.18921 1.20262 1.04161 0.95406 0.89694 1.25249 0.98507 0.96232 0.97334 1.69834 1.49283 1.10525 1.25351 0.87039 0.76979 0.80834 0.84444 1.21078 1.23303 1.19788 1.21381 0.85821 0.99690 0.92377 0.88364 0.87351 0.85902 0.91396 0.90912 0.83780 0.83863 0.81467 0.74903 0.91558 0.91607 0.92763 0.92351 0.91936 0.92636 0.91987 0.96081 0.92829 0.95742 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 14.31 29.01 0.42 -0.78 16 2 C -0.15 -1.32 9.89 -36.03 -0.36 -1.68 16 3 C 0.08 0.71 5.17 36.01 0.19 0.90 16 4 O -0.27 -3.72 8.18 -40.61 -0.33 -4.06 16 5 C 0.14 1.87 6.71 -38.55 -0.26 1.61 16 6 C -0.18 -1.78 9.13 -39.14 -0.36 -2.13 16 7 C -0.11 -0.99 10.10 -39.36 -0.40 -1.39 16 8 C 0.06 0.74 11.17 -17.55 -0.20 0.54 16 9 N -0.41 -6.53 9.54 -9.71 -0.09 -6.62 16 10 C 0.05 0.77 6.76 -82.89 -0.56 0.21 16 11 C 0.57 10.45 7.80 -12.34 -0.10 10.35 16 12 O -0.52 -10.48 15.14 -16.64 -0.25 -10.73 16 13 N -0.71 -12.71 5.32 -61.25 -0.33 -13.04 16 14 C 0.13 2.12 5.07 -4.04 -0.02 2.10 16 15 C -0.12 -2.12 2.37 -90.50 -0.21 -2.33 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.10 -1.56 5.17 -26.69 -0.14 -1.70 16 18 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 19 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 20 N -0.61 -14.49 2.77 -172.32 -0.48 -14.97 16 21 C -0.26 -7.27 10.03 -15.06 -0.15 -7.42 16 22 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 23 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 24 N -0.91 -27.76 13.97 55.49 0.78 -26.99 16 25 Si 0.88 22.87 24.35 -169.99 -4.14 18.73 16 26 H -0.28 -7.18 6.62 56.52 0.37 -6.80 16 27 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 28 H -0.27 -7.10 6.64 56.52 0.38 -6.73 16 29 C 0.13 2.93 3.29 -3.71 -0.01 2.92 16 30 H 0.10 0.54 7.90 -52.49 -0.41 0.13 16 31 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.07 0.49 7.42 -51.93 -0.39 0.11 16 34 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 35 H 0.14 0.95 6.46 -52.49 -0.34 0.61 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.41 7.70 7.03 -40.82 -0.29 7.41 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.02 0.56 7.07 -51.93 -0.37 0.19 16 49 H 0.07 1.74 3.71 -51.93 -0.19 1.55 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -34.82 393.38 -8.83 -43.65 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.48 Total: 5.71 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.44 Total: 2.39 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.12 Total: -61.61 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.58 Total: -14.79 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.82 -8.83 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342419085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.777 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds