Wall clock time and date at job start Wed Apr 1 2020 04:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99953 * 2 1 4 4 O 1.42899 * 109.47093 * 134.99755 * 3 2 1 5 5 C 1.35653 * 116.99771 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.53987 * 359.71556 * 5 4 3 7 7 C 1.38307 * 118.43572 * 180.30042 * 6 5 4 8 8 C 1.38760 * 119.44836 * 359.95734 * 7 6 5 9 9 N 1.31378 * 121.06543 * 0.04545 * 8 7 6 10 10 C 1.32852 * 121.69764 * 359.97438 * 9 8 7 11 11 C 1.47829 * 119.78607 * 180.02562 * 10 9 8 12 12 O 1.21559 * 120.00423 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00023 * 359.97438 * 11 10 9 14 14 C 1.46502 * 120.00214 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47009 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.49525 * 55.00260 * 15 14 13 17 17 C 1.53040 * 109.49401 * 175.06338 * 15 14 13 18 18 C 1.53040 * 109.53244 * 181.31674 * 17 15 14 19 19 C 1.53189 * 109.31411 * 298.63530 * 18 17 15 20 20 N 1.46927 * 108.77597 * 54.63950 * 19 18 17 21 21 C 1.36937 * 120.63443 * 126.38580 * 20 19 18 22 22 H 1.08000 * 119.99899 * 332.58556 * 21 20 19 23 23 C 1.38812 * 120.00166 * 152.57753 * 21 20 19 24 24 N 1.31621 * 120.00011 * 159.34477 * 23 21 20 25 25 Si 1.86797 * 119.99900 * 339.35133 * 23 21 20 26 26 H 1.48496 * 109.47356 * 92.94422 * 25 23 21 27 27 H 1.48500 * 109.46643 * 212.94375 * 25 23 21 28 28 H 1.48505 * 109.47296 * 332.94004 * 25 23 21 29 29 C 1.46931 * 118.76197 * 306.41133 * 20 19 18 30 30 H 1.07999 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99792 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99613 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47089 * 14.99574 * 3 2 1 34 34 H 1.09006 * 109.46738 * 254.99662 * 3 2 1 35 35 H 1.07996 * 120.78247 * 0.26039 * 6 5 4 36 36 H 1.07996 * 120.27403 * 180.02562 * 7 6 5 37 37 H 1.08000 * 119.46780 * 180.02562 * 8 7 6 38 38 H 0.97003 * 119.99606 * 0.02562 * 13 11 10 39 39 H 1.08992 * 109.47162 * 299.99776 * 14 13 11 40 40 H 1.08996 * 109.46963 * 60.00291 * 14 13 11 41 41 H 1.08993 * 109.46192 * 301.34105 * 17 15 14 42 42 H 1.09001 * 109.45907 * 61.31390 * 17 15 14 43 43 H 1.09002 * 109.50037 * 58.59504 * 18 17 15 44 44 H 1.09006 * 109.49700 * 178.68490 * 18 17 15 45 45 H 1.09000 * 109.58366 * 174.42216 * 19 18 17 46 46 H 1.09002 * 109.58884 * 294.70682 * 19 18 17 47 47 H 0.96992 * 119.99914 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.55933 * 293.78242 * 29 20 19 49 49 H 1.09004 * 109.61462 * 173.35840 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9075 2.3434 1.0787 6 6 3.6687 3.4733 0.2991 7 6 4.4956 4.5704 0.4588 8 6 5.5296 4.5166 1.3826 9 7 5.7362 3.4403 2.1070 10 6 4.9694 2.3618 1.9892 11 6 5.2396 1.1736 2.8262 12 8 4.5401 0.1849 2.7221 13 7 6.2615 1.1866 3.7049 14 6 6.5290 0.0093 4.5348 15 6 7.7327 0.2850 5.4383 16 1 7.5539 1.1920 6.0157 17 6 7.9371 -0.8951 6.3909 18 6 9.1206 -0.6060 7.3171 19 6 10.3910 -0.4363 6.4780 20 7 10.1524 0.5987 5.4628 21 6 10.9998 1.6678 5.3437 22 1 11.5555 2.0146 6.2023 23 6 11.1445 2.3057 4.1194 24 7 11.6099 3.5359 4.0692 25 14 10.6787 1.4184 2.5430 26 1 9.2717 1.7383 2.1921 27 1 11.5753 1.8583 1.4440 28 1 10.8189 -0.0469 2.7398 29 6 8.9871 0.4657 4.5778 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4756 1.4867 -0.9927 35 1 2.8574 3.4918 -0.4134 36 1 4.3371 5.4619 -0.1297 37 1 6.1753 5.3733 1.5078 38 1 6.8194 1.9757 3.7882 39 1 5.6557 -0.2077 5.1498 40 1 6.7436 -0.8458 3.8939 41 1 7.0364 -1.0407 6.9872 42 1 8.1400 -1.7970 5.8135 43 1 8.9294 0.3095 7.8770 44 1 9.2512 -1.4366 8.0108 45 1 11.2164 -0.1330 7.1219 46 1 10.6356 -1.3799 5.9903 47 1 11.7107 3.9818 3.2138 48 1 9.1161 -0.4035 3.9327 49 1 8.8860 1.3638 3.9684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342419085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:28 Heat of formation + Delta-G solvation = -14.288895 kcal Electronic energy + Delta-G solvation = -30542.286479 eV Core-core repulsion = 26470.131565 eV Total energy + Delta-G solvation = -4072.154914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.04126 -40.49089 -39.51686 -39.31880 -36.24106 -35.11523 -34.82445 -33.59818 -32.77939 -32.09792 -31.52762 -27.82489 -27.47030 -27.12711 -25.41146 -24.13871 -23.89790 -22.48745 -21.89068 -21.00820 -20.78251 -19.48598 -18.89375 -18.74187 -18.19108 -17.37601 -17.25175 -16.81839 -16.45439 -16.26934 -16.00275 -15.78354 -15.49640 -15.25766 -15.12111 -14.94256 -14.64823 -14.59951 -14.47276 -14.11955 -13.93179 -13.76144 -13.57679 -13.37417 -13.10312 -13.06254 -12.60229 -12.58991 -12.21027 -12.09669 -12.00958 -11.70261 -11.62206 -11.45491 -11.28945 -11.22992 -10.91259 -10.72363 -10.65603 -10.44199 -10.16631 -9.55342 -8.92291 -8.17712 -5.47614 -0.42550 0.15681 1.06861 1.28097 1.35762 1.43504 1.68022 2.06619 2.21402 2.38280 2.76146 3.02431 3.15823 3.32864 3.51212 3.62525 3.82215 3.86858 3.90788 3.94649 3.98576 4.03623 4.10990 4.25547 4.30366 4.40306 4.45114 4.47219 4.48914 4.59047 4.71332 4.74747 4.81363 4.89160 4.90813 4.94981 4.97658 5.09826 5.19946 5.23013 5.29958 5.34707 5.41515 5.58115 5.59026 5.63226 5.87524 6.13053 6.15876 6.35197 6.74890 6.91965 7.11039 7.62613 8.04316 9.02192 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003220 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.283924 B = 8694.866519 C =10247.218145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.181 4.181 3 C 0.071 3.929 4 O -0.298 6.298 5 C 0.130 3.870 6 C -0.169 4.169 7 C -0.082 4.082 8 C 0.047 3.953 9 N -0.451 5.451 10 C -0.001 4.001 11 C 0.563 3.437 12 O -0.552 6.552 13 N -0.714 5.714 14 C 0.131 3.869 15 C -0.105 4.105 16 H 0.072 0.928 17 C -0.098 4.098 18 C -0.124 4.124 19 C 0.137 3.863 20 N -0.620 5.620 21 C -0.246 4.246 22 H 0.057 0.943 23 C -0.024 4.024 24 N -0.950 5.950 25 Si 0.936 3.064 26 H -0.278 1.278 27 H -0.311 1.311 28 H -0.271 1.271 29 C 0.132 3.868 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.185 0.815 36 H 0.193 0.807 37 H 0.186 0.814 38 H 0.409 0.591 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.021 0.979 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 -1.767 -8.517 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.200 4.200 3 C -0.003 4.003 4 O -0.209 6.209 5 C 0.078 3.922 6 C -0.195 4.195 7 C -0.102 4.102 8 C -0.115 4.115 9 N -0.163 5.163 10 C -0.137 4.137 11 C 0.350 3.650 12 O -0.430 6.430 13 N -0.365 5.365 14 C 0.008 3.992 15 C -0.126 4.126 16 H 0.090 0.910 17 C -0.136 4.136 18 C -0.163 4.163 19 C 0.013 3.987 20 N -0.344 5.344 21 C -0.375 4.375 22 H 0.075 0.925 23 C -0.220 4.220 24 N -0.596 5.596 25 Si 0.766 3.234 26 H -0.205 1.205 27 H -0.240 1.240 28 H -0.196 1.196 29 C 0.007 3.993 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.202 0.798 36 H 0.210 0.790 37 H 0.203 0.797 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.039 0.961 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.388 -2.676 -7.922 24.837 hybrid contribution 0.142 0.424 -1.529 1.593 sum -23.246 -2.252 -9.451 25.194 Atomic orbital electron populations 1.24105 0.94573 1.03957 0.96341 1.22639 0.96415 0.97341 1.03559 1.22281 0.87545 0.98161 0.92272 1.86404 1.41913 1.34081 1.58511 1.20146 0.90207 0.88097 0.93709 1.22192 1.03778 0.91999 1.01541 1.22722 0.91944 0.99646 0.95842 1.23352 0.98583 0.95823 0.93717 1.67579 1.25094 0.99850 1.23804 1.20515 0.96771 0.95110 1.01348 1.18046 0.80511 0.86578 0.79889 1.90758 1.49329 1.34119 1.68783 1.46033 1.32008 1.18990 1.39452 1.21463 0.97808 0.87195 0.92756 1.21793 0.92989 1.00803 0.96999 0.91000 1.21380 0.99165 0.96130 0.96876 1.21893 0.94809 1.01875 0.97724 1.21195 0.96983 0.90299 0.90262 1.44506 1.25662 1.24675 1.39596 1.18890 1.19633 1.04724 0.94292 0.92533 1.25737 0.99658 0.96725 0.99834 1.69934 1.51938 1.11890 1.25817 0.86081 0.76653 0.79577 0.81071 1.20539 1.24041 1.19631 1.21333 0.87107 0.98223 0.92622 0.86414 0.86331 0.87760 0.89051 0.89196 0.79787 0.79029 0.79680 0.75550 0.89957 0.92014 0.89598 0.91457 0.92825 0.88998 0.92602 0.94990 0.92939 0.96090 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 14.31 67.78 0.97 -0.80 16 2 C -0.18 -3.06 9.89 25.65 0.25 -2.81 16 3 C 0.07 1.18 5.17 71.24 0.37 1.55 16 4 O -0.30 -8.25 8.18 -68.70 -0.56 -8.81 16 5 C 0.13 3.48 6.71 22.94 0.15 3.63 16 6 C -0.17 -2.81 9.13 22.55 0.21 -2.60 16 7 C -0.08 -1.20 10.10 22.41 0.23 -0.97 16 8 C 0.05 1.06 11.17 84.89 0.95 2.01 16 9 N -0.45 -14.45 9.54 -184.64 -1.76 -16.21 16 10 C 0.00 -0.03 6.76 41.93 0.28 0.25 16 11 C 0.56 21.48 7.80 86.78 0.68 22.16 16 12 O -0.55 -22.87 15.14 17.09 0.26 -22.61 16 13 N -0.71 -26.46 5.32 -465.98 -2.48 -28.94 16 14 C 0.13 4.39 5.07 86.38 0.44 4.82 16 15 C -0.11 -3.68 2.37 -10.72 -0.03 -3.70 16 16 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.10 -2.77 5.17 30.62 0.16 -2.62 16 18 C -0.12 -3.73 6.08 30.67 0.19 -3.55 16 19 C 0.14 5.30 6.52 86.36 0.56 5.86 16 20 N -0.62 -29.86 2.77 -699.09 -1.94 -31.80 16 21 C -0.25 -14.18 10.03 84.03 0.84 -13.34 16 22 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 23 C -0.02 -1.45 5.23 84.86 0.44 -1.00 16 24 N -0.95 -60.16 13.97 21.65 0.30 -59.86 16 25 Si 0.94 49.02 24.35 68.60 1.67 50.69 16 26 H -0.28 -14.20 6.62 99.48 0.66 -13.54 16 27 H -0.31 -16.48 7.11 99.48 0.71 -15.78 16 28 H -0.27 -13.94 6.64 99.48 0.66 -13.28 16 29 C 0.13 5.85 3.29 86.36 0.28 6.13 16 30 H 0.12 0.89 7.90 -2.91 -0.02 0.87 16 31 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.10 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.09 1.02 7.42 -2.39 -0.02 1.01 16 34 H 0.09 1.10 7.69 -2.38 -0.02 1.09 16 35 H 0.18 1.48 6.46 -2.91 -0.02 1.46 16 36 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 38 H 0.41 15.93 7.03 -92.71 -0.65 15.28 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 45 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.02 0.95 7.07 -2.39 -0.02 0.93 16 49 H 0.05 2.33 3.71 -2.39 -0.01 2.32 16 Total: -1.00 -80.93 393.38 2.68 -78.25 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.21 Total: 24.25 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.98 Total: 15.04 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -5.87 Total: -136.80 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.30 Total: -31.43 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.67 Total: 50.69 kcal Total: -80.93 2.68 -78.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342419085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.965 kcal (2) G-P(sol) polarization free energy of solvation -80.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds