Wall clock time and date at job start Wed Apr 1 2020 04:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47067 * 2 1 4 4 O 1.21280 * 119.99582 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99827 * 180.02562 * 3 2 1 6 6 C 1.47559 * 126.85817 * 179.97438 * 5 3 2 7 7 C 1.54337 * 104.01253 * 151.58939 * 6 5 3 8 8 N 1.47231 * 104.91513 * 28.35103 * 7 6 5 9 9 C 1.34779 * 126.21849 * 162.72134 * 8 7 6 10 10 O 1.21588 * 120.00506 * 179.69219 * 9 8 7 11 11 N 1.34780 * 119.99371 * 359.69865 * 9 8 7 12 12 C 1.46504 * 119.99538 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47297 * 324.99430 * 12 11 9 14 14 C 1.53001 * 109.46817 * 204.99791 * 12 11 9 15 15 C 1.50695 * 109.47420 * 64.99707 * 14 12 11 16 16 H 1.08007 * 119.99727 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00478 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00360 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99511 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46755 * 90.00242 * 19 17 15 21 21 H 1.48508 * 109.46749 * 210.00017 * 19 17 15 22 22 H 1.48496 * 109.47286 * 329.99759 * 19 17 15 23 23 C 1.50700 * 109.47321 * 84.99561 * 12 11 9 24 24 C 1.38231 * 119.99825 * 39.86585 * 23 12 11 25 25 C 1.38243 * 120.00070 * 180.02562 * 24 23 12 26 26 C 1.38235 * 119.99602 * 0.07188 * 25 24 23 27 27 C 1.38230 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 120.00292 * 219.99723 * 23 12 11 29 29 C 1.46830 * 107.57099 * 342.46313 * 8 7 6 30 30 H 1.08999 * 109.47114 * 60.00213 * 1 2 3 31 31 H 1.09003 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46751 * 299.99811 * 1 2 3 33 33 H 1.08997 * 109.47225 * 239.99783 * 2 1 3 34 34 H 1.08999 * 109.47114 * 119.99787 * 2 1 3 35 35 H 1.08992 * 110.50179 * 270.45847 * 6 5 3 36 36 H 1.09000 * 110.50121 * 33.01030 * 6 5 3 37 37 H 1.09013 * 110.47626 * 269.45042 * 7 6 5 38 38 H 1.09000 * 110.27971 * 147.15986 * 7 6 5 39 39 H 0.96990 * 120.00161 * 359.97438 * 11 9 8 40 40 H 1.08994 * 109.46962 * 185.00107 * 14 12 11 41 41 H 1.09004 * 109.46975 * 304.99918 * 14 12 11 42 42 H 0.96998 * 119.99983 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00367 * 0.10906 * 24 23 12 44 44 H 1.08000 * 119.99728 * 180.34119 * 25 24 23 45 45 H 1.08000 * 119.99297 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00350 * 179.97438 * 27 26 25 47 47 H 1.08007 * 119.99474 * 359.97438 * 28 23 12 48 48 H 1.09008 * 109.67923 * 119.91073 * 29 8 7 49 49 H 1.08995 * 109.68157 * 240.40987 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.0119 2.9896 -0.0011 7 6 5.3583 2.7406 0.7109 8 7 5.6770 1.3297 0.4362 9 6 6.8848 0.7459 0.5672 10 8 7.0199 -0.4354 0.3132 11 7 7.9427 1.4718 0.9800 12 6 9.2557 0.8375 1.1218 13 1 9.1281 -0.1888 1.4663 14 6 10.0912 1.6168 2.1394 15 6 9.4501 1.5148 3.4993 16 1 8.5381 0.9502 3.6254 17 6 10.0283 2.1414 4.5829 18 7 9.4690 2.0520 5.7698 19 14 11.6062 3.1173 4.3650 20 1 11.2748 4.5281 4.0409 21 1 12.3949 3.0703 5.6224 22 1 12.4031 2.5293 3.2585 23 6 9.9596 0.8362 -0.2107 24 6 9.8725 1.9391 -1.0394 25 6 10.5178 1.9378 -2.2620 26 6 11.2490 0.8329 -2.6563 27 6 11.3353 -0.2703 -1.8280 28 6 10.6903 -0.2689 -0.6054 29 6 4.4388 0.6724 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.1735 3.3351 -1.0221 36 1 3.4141 3.7117 0.5551 37 1 5.2582 2.9042 1.7841 38 1 6.1299 3.3906 0.2983 39 1 7.8350 2.4142 1.1823 40 1 11.0971 1.1990 2.1796 41 1 10.1443 2.6637 1.8403 42 1 9.8757 2.4931 6.5320 43 1 9.3014 2.8024 -0.7312 44 1 10.4542 2.8017 -2.9070 45 1 11.7527 0.8318 -3.6116 46 1 11.9063 -1.1337 -2.1362 47 1 10.7569 -1.1313 0.0415 48 1 4.5701 0.2731 -1.0063 49 1 4.1910 -0.1370 0.6861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567607393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:30 Heat of formation + Delta-G solvation = -44.147926 kcal Electronic energy + Delta-G solvation = -30416.701992 eV Core-core repulsion = 26343.252293 eV Total energy + Delta-G solvation = -4073.449699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80016 -40.85122 -39.92166 -38.52029 -36.81167 -34.83040 -34.44407 -33.71934 -32.32014 -31.65662 -31.02015 -30.95004 -27.53391 -26.32301 -25.39419 -23.61868 -23.51699 -23.24498 -21.80726 -21.02186 -20.57408 -19.32374 -19.02433 -18.18566 -17.68056 -17.58912 -17.21469 -16.59952 -16.47991 -16.28375 -16.03162 -15.79470 -15.43428 -15.04971 -14.76519 -14.60940 -14.43769 -14.16409 -14.15854 -14.06613 -13.96966 -13.82019 -13.55368 -13.38699 -13.19410 -13.03404 -12.87265 -12.60897 -12.45750 -12.32640 -12.07683 -11.94790 -11.77709 -11.71157 -11.42846 -11.37903 -11.10137 -10.75598 -10.26939 -10.05784 -9.73321 -9.61255 -9.49257 -8.26339 -6.30986 0.51277 0.58867 1.16401 1.37500 1.41587 1.46998 1.51665 1.95435 2.11262 2.37202 2.88351 3.04320 3.12515 3.27432 3.57239 3.91803 3.96455 3.99134 4.05879 4.13827 4.18086 4.23297 4.31781 4.34565 4.38202 4.39664 4.53399 4.60365 4.66010 4.74011 4.76172 4.78709 4.83409 4.97413 5.03092 5.05011 5.17258 5.19635 5.20826 5.27113 5.33759 5.56032 5.58381 5.67520 5.67800 5.76252 5.93961 6.20498 6.27715 6.31428 6.76023 6.88143 6.97497 7.33181 7.51806 8.89832 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.003293 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.871287 B = 8500.566910 C =10547.399786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.140 4.140 3 C 0.537 3.463 4 O -0.572 6.572 5 N -0.629 5.629 6 C 0.100 3.900 7 C 0.088 3.912 8 N -0.647 5.647 9 C 0.733 3.267 10 O -0.624 6.624 11 N -0.707 5.707 12 C 0.224 3.776 13 H 0.058 0.942 14 C -0.004 4.004 15 C -0.517 4.517 16 H 0.031 0.969 17 C 0.012 3.988 18 N -0.948 5.948 19 Si 0.943 3.057 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.248 1.248 23 C -0.100 4.100 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.129 4.129 29 C 0.358 3.642 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.405 0.595 40 H 0.033 0.967 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.124 0.876 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 0.432 -18.530 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.328 3.672 4 O -0.450 6.450 5 N -0.365 5.365 6 C -0.022 4.022 7 C -0.035 4.035 8 N -0.388 5.388 9 C 0.434 3.566 10 O -0.505 6.505 11 N -0.360 5.360 12 C 0.119 3.881 13 H 0.076 0.924 14 C -0.042 4.042 15 C -0.555 4.555 16 H 0.050 0.950 17 C -0.185 4.185 18 N -0.589 5.589 19 Si 0.767 3.233 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.172 1.172 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.148 4.148 29 C 0.149 3.851 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.241 0.759 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.132 0.868 48 H 0.104 0.896 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.866 0.057 -18.512 19.744 hybrid contribution 0.499 0.754 1.127 1.444 sum -6.367 0.811 -17.385 18.532 Atomic orbital electron populations 1.21540 0.92586 1.02911 1.02195 1.21776 0.98788 0.90986 1.06401 1.21043 0.78855 0.93219 0.74064 1.90702 1.54379 1.48257 1.51706 1.48763 1.05198 1.08664 1.73896 1.22559 0.91292 0.86065 1.02321 1.22630 0.97601 0.82113 1.01190 1.47373 1.07125 1.12096 1.72177 1.15225 0.79248 0.84060 0.78050 1.90877 1.84273 1.15585 1.59726 1.44888 1.07346 1.13424 1.70296 1.19455 0.80527 0.96858 0.91262 0.92387 1.19740 0.95604 0.96351 0.92515 1.21181 1.09754 1.31835 0.92707 0.95038 1.25880 1.00711 0.97355 0.94583 1.70064 1.42146 1.45800 1.00842 0.85762 0.79749 0.79732 0.78033 1.18642 1.21734 1.17165 1.20402 0.98247 0.95268 0.96226 1.21064 1.00087 0.97612 0.94760 1.21430 0.97284 0.99416 0.96094 1.21468 0.99332 0.93286 1.00510 1.21376 0.99504 0.99642 0.93685 1.21181 0.98239 0.97733 0.97608 1.21044 0.75944 0.87344 1.00762 0.92802 0.89554 0.93399 0.86376 0.87355 0.88637 0.88489 0.91023 0.87220 0.75949 0.94875 0.94588 0.92619 0.85765 0.83662 0.83401 0.84048 0.86789 0.89624 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.20 71.98 0.66 -1.37 16 2 C -0.14 -2.12 5.56 29.85 0.17 -1.96 16 3 C 0.54 12.03 7.88 87.66 0.69 12.72 16 4 O -0.57 -16.83 16.29 -3.03 -0.05 -16.88 16 5 N -0.63 -13.27 3.34 -826.55 -2.76 -16.03 16 6 C 0.10 1.86 7.15 86.63 0.62 2.48 16 7 C 0.09 1.81 6.65 86.69 0.58 2.39 16 8 N -0.65 -17.47 3.35 -845.50 -2.83 -20.30 16 9 C 0.73 25.86 8.46 179.05 1.52 27.37 16 10 O -0.62 -26.46 16.36 -3.99 -0.07 -26.53 16 11 N -0.71 -24.64 3.99 -461.39 -1.84 -26.48 16 12 C 0.22 8.74 2.12 44.25 0.09 8.84 16 13 H 0.06 2.64 7.44 -2.39 -0.02 2.62 16 14 C 0.00 -0.19 3.56 29.85 0.11 -0.08 16 15 C -0.52 -27.78 9.39 25.60 0.24 -27.54 16 16 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 17 C 0.01 0.66 5.47 84.65 0.46 1.12 16 18 N -0.95 -57.30 13.96 21.45 0.30 -57.01 16 19 Si 0.94 41.78 27.47 68.60 1.88 43.67 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.25 -10.26 6.54 99.48 0.65 -9.61 16 23 C -0.10 -3.35 4.91 -19.87 -0.10 -3.45 16 24 C -0.12 -3.29 9.32 22.27 0.21 -3.08 16 25 C -0.12 -2.87 10.05 22.27 0.22 -2.64 16 26 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 27 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 28 C -0.13 -4.07 9.67 22.27 0.22 -3.85 16 29 C 0.36 8.05 6.77 170.67 1.16 9.20 16 30 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.44 7.97 -2.39 -0.02 1.42 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.83 8.03 -2.39 -0.02 1.82 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.11 1.80 7.64 -2.39 -0.02 1.78 16 39 H 0.40 12.60 7.31 -92.72 -0.68 11.93 16 40 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 41 H 0.04 1.44 7.57 -2.38 -0.02 1.42 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.12 3.15 7.72 -2.91 -0.02 3.13 16 44 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.11 3.62 8.04 -2.91 -0.02 3.60 16 48 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.08 1.76 7.75 -2.39 -0.02 1.74 16 Total: -1.00 -76.02 405.81 2.14 -73.88 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.21 Total: 30.99 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 7.29 Total: 14.68 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -7.13 Total: -119.81 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.11 Total: -43.41 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.67 kcal Total: -76.02 2.14 -73.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567607393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.736 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds