Wall clock time and date at job start Wed Apr 1 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47262 * 2 1 4 4 O 1.42895 * 109.47507 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00289 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.21360 * 328.06924 * 5 4 3 7 7 C 1.50129 * 110.24817 * 90.00412 * 5 4 3 8 8 C 1.54846 * 110.81088 * 216.79866 * 7 5 4 9 9 C 1.54895 * 110.03274 * 321.19988 * 8 7 5 10 10 N 1.43340 * 116.13964 * 318.41356 * 9 8 7 11 11 S 1.65599 * 120.66610 * 271.75074 * 10 9 8 12 12 O 1.42104 * 104.27826 * 26.07491 * 11 10 9 13 13 O 1.42100 * 104.27772 * 153.92936 * 11 10 9 14 14 C 1.81400 * 104.45232 * 270.00025 * 11 10 9 15 15 C 1.52995 * 109.47212 * 173.83254 * 14 11 10 16 16 C 1.50700 * 115.55084 * 39.91633 * 15 14 11 17 17 H 1.07994 * 120.00700 * 264.80536 * 16 15 14 18 18 C 1.37877 * 119.99703 * 84.80003 * 16 15 14 19 19 N 1.31518 * 120.00367 * 353.18811 * 18 16 15 20 20 Si 1.86804 * 119.99957 * 173.18257 * 18 16 15 21 21 H 1.48498 * 109.47156 * 60.00557 * 20 18 16 22 22 H 1.48502 * 109.46968 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47070 * 299.99786 * 20 18 16 24 24 C 1.53003 * 117.50122 * 254.21308 * 15 14 11 25 25 C 1.53001 * 117.49718 * 185.58945 * 15 14 11 26 26 C 1.50168 * 118.79540 * 91.75522 * 10 9 8 27 27 C 1.46236 * 107.53141 * 289.61572 * 26 10 9 28 28 H 1.08995 * 109.46822 * 299.99454 * 1 2 3 29 29 H 1.08999 * 109.47014 * 60.00237 * 1 2 3 30 30 H 1.08999 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46965 * 239.99882 * 2 1 3 32 32 H 1.09003 * 109.46773 * 120.00477 * 2 1 3 33 33 H 1.09007 * 109.47227 * 60.00042 * 3 2 1 34 34 H 1.08998 * 109.47203 * 300.00547 * 3 2 1 35 35 H 1.09000 * 109.20920 * 96.45594 * 7 5 4 36 36 H 1.09003 * 109.20923 * 337.13768 * 7 5 4 37 37 H 1.09005 * 109.35565 * 81.33856 * 8 7 5 38 38 H 1.09002 * 109.35622 * 201.05767 * 8 7 5 39 39 H 1.08999 * 108.15815 * 80.29263 * 9 8 7 40 40 H 1.09000 * 108.15817 * 196.85936 * 9 8 7 41 41 H 1.08996 * 109.46997 * 293.83866 * 14 11 10 42 42 H 1.09004 * 109.46980 * 53.83552 * 14 11 10 43 43 H 0.96995 * 120.00600 * 185.02931 * 19 18 16 44 44 H 1.09000 * 117.49725 * 359.97438 * 24 15 14 45 45 H 1.08994 * 117.50287 * 145.02343 * 24 15 14 46 46 H 1.09002 * 117.49662 * 214.97606 * 25 15 14 47 47 H 1.09000 * 117.50178 * 359.97438 * 25 15 14 48 48 H 1.08996 * 109.84351 * 170.11029 * 26 10 9 49 49 H 1.09000 * 109.84613 * 49.12178 * 26 10 9 50 50 H 1.09001 * 108.52203 * 297.16773 * 27 26 10 51 51 H 1.09001 * 108.52359 * 179.65419 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0012 6 1 3.4106 3.4452 -0.5398 7 6 4.2611 3.2221 1.4100 8 6 3.9887 4.7421 1.5254 9 6 4.5247 5.4740 0.2699 10 7 5.8002 5.0388 -0.2184 11 16 7.1995 5.7099 0.3594 12 8 6.8584 6.1647 1.6618 13 8 8.1781 4.6971 0.1701 14 6 7.5165 7.1152 -0.7429 15 6 8.7098 7.9161 -0.2181 16 6 9.8513 7.0984 0.3290 17 1 9.9147 6.9004 1.3887 18 6 10.8149 6.6027 -0.5236 19 7 10.6690 6.7276 -1.8247 20 14 12.3279 5.7540 0.1693 21 1 11.9113 4.5719 0.9656 22 1 13.2043 5.3158 -0.9466 23 1 13.0713 6.7002 1.0396 24 6 8.4188 9.2605 0.4518 25 6 9.0568 9.2206 -0.9383 26 6 5.8453 3.9624 -1.2644 27 6 5.4400 2.7107 -0.6262 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.2900 3.0186 1.7067 36 1 3.5840 2.6850 2.0743 37 1 2.9153 4.9112 1.6116 38 1 4.4883 5.1323 2.4121 39 1 3.7942 5.3553 -0.5303 40 1 4.5973 6.5367 0.5014 41 1 7.7377 6.7482 -1.7451 42 1 6.6355 7.7562 -0.7770 43 1 11.3088 6.3158 -2.4263 44 1 7.3771 9.5746 0.5182 45 1 9.0529 9.5538 1.2884 46 1 10.1107 9.4876 -1.0161 47 1 8.4352 9.5081 -1.7863 48 1 6.8587 3.8677 -1.6544 49 1 5.1573 4.2045 -2.0745 50 1 6.1645 2.4679 0.1511 51 1 5.4612 1.9180 -1.3741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574604815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:33 Heat of formation + Delta-G solvation = -101.618608 kcal Electronic energy + Delta-G solvation = -30367.937225 eV Core-core repulsion = 26395.146610 eV Total energy + Delta-G solvation = -3972.790615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.58647 -37.20474 -36.71211 -36.15375 -34.85085 -34.10086 -32.58496 -32.05540 -31.94178 -28.15472 -26.68488 -25.89397 -25.39362 -24.54260 -21.99529 -21.33174 -21.19651 -20.29441 -19.46548 -18.01794 -17.32759 -16.56462 -16.31600 -16.23062 -15.84662 -15.15552 -15.01790 -14.68546 -14.53592 -14.35987 -14.03996 -13.80914 -13.71062 -13.20412 -13.05925 -12.96082 -12.62561 -12.33946 -12.20257 -12.11479 -11.95036 -11.77607 -11.44348 -11.33287 -11.19411 -11.08821 -10.99537 -10.94373 -10.86738 -10.81600 -10.74675 -10.54567 -10.52965 -10.34855 -10.16654 -10.07038 -9.69928 -9.53504 -8.99532 -8.73962 -8.52477 -8.08889 -6.15167 -4.29935 1.17405 3.35486 3.37430 3.42798 3.45560 3.50899 4.40858 4.59458 4.66988 4.71113 4.79495 4.82770 4.93656 5.00917 5.04352 5.13268 5.15108 5.17023 5.21739 5.22980 5.27909 5.31096 5.35747 5.46933 5.61713 5.66892 5.72771 5.73895 5.75422 5.81986 5.84989 5.93805 5.95351 6.00344 6.12260 6.24749 6.28849 6.33376 6.34075 6.36546 6.45463 6.62446 6.69886 6.94257 7.00485 7.19042 7.21575 7.39439 7.79250 8.19356 8.78527 9.47152 10.92411 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003045 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.494056 B = 9192.730032 C = 9857.146260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.062 3.938 4 O -0.383 6.383 5 C 0.096 3.904 6 H 0.068 0.932 7 C -0.142 4.142 8 C -0.140 4.140 9 C 0.127 3.873 10 N -1.012 6.012 11 S 2.623 3.377 12 O -0.970 6.970 13 O -0.939 6.939 14 C -0.561 4.561 15 C 0.051 3.949 16 C -0.543 4.543 17 H 0.068 0.932 18 C 0.098 3.902 19 N -0.868 5.868 20 Si 0.890 3.110 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.205 4.205 25 C -0.145 4.145 26 C 0.131 3.869 27 C -0.140 4.140 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 -7.231 -0.704 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.302 6.302 5 C 0.039 3.961 6 H 0.086 0.914 7 C -0.180 4.180 8 C -0.179 4.179 9 C 0.000 4.000 10 N -0.847 5.847 11 S 2.720 3.280 12 O -0.960 6.960 13 O -0.929 6.929 14 C -0.693 4.693 15 C 0.049 3.951 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.109 4.109 19 N -0.502 5.502 20 Si 0.716 3.284 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.242 4.242 25 C -0.184 4.184 26 C 0.007 3.993 27 C -0.178 4.178 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.121 0.879 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.059 -7.729 -0.163 19.644 hybrid contribution 0.404 0.236 -0.343 0.580 sum -17.655 -7.494 -0.505 19.186 Atomic orbital electron populations 1.21698 0.94937 1.02109 1.01976 1.21463 0.95527 0.95878 1.03287 1.22527 0.81559 0.97478 0.99933 1.87903 1.19033 1.28183 1.95119 1.21366 0.94642 0.83869 0.96268 0.91422 1.22106 1.03063 0.95896 0.96944 1.22690 1.00592 0.94842 0.99797 1.20588 0.85820 0.97789 0.95845 1.58358 1.21403 1.51157 1.53799 1.04816 0.71540 0.76257 0.75401 1.93467 1.82972 1.83553 1.36052 1.93523 1.57726 1.55427 1.86228 1.30024 1.05618 1.17613 1.16054 1.18169 0.92008 0.85912 0.99010 1.20548 1.07859 1.35324 0.94312 0.91381 1.24889 0.97617 0.93818 0.94606 1.69940 1.36567 1.41685 1.01967 0.86663 0.82143 0.80529 0.79053 1.19100 1.20969 1.19941 1.23122 0.99166 1.04933 0.96955 1.22534 0.99844 1.03591 0.92418 1.20711 1.03532 0.85539 0.89535 1.20868 0.95697 0.98904 1.02364 0.92569 0.92571 0.92139 0.91203 0.91212 0.93520 0.93577 0.91010 0.91852 0.91277 0.90228 0.91716 0.91463 0.85564 0.88809 0.92492 0.91315 0.89701 0.89633 0.91650 0.87925 0.91052 0.90275 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.99 6.30 -26.73 -0.17 -1.16 16 3 C 0.06 0.57 5.73 37.15 0.21 0.79 16 4 O -0.38 -4.68 9.89 -35.23 -0.35 -5.03 16 5 C 0.10 1.15 2.35 -28.40 -0.07 1.09 16 6 H 0.07 0.72 5.99 -51.93 -0.31 0.41 16 7 C -0.14 -1.84 5.39 -27.19 -0.15 -1.99 16 8 C -0.14 -1.74 6.40 -24.76 -0.16 -1.90 16 9 C 0.13 1.65 4.65 -4.71 -0.02 1.63 16 10 N -1.01 -15.80 2.81 -116.18 -0.33 -16.12 16 11 S 2.62 55.21 4.53 -107.50 -0.49 54.72 16 12 O -0.97 -22.18 17.01 -57.54 -0.98 -23.16 16 13 O -0.94 -23.06 15.96 -57.54 -0.92 -23.97 16 14 C -0.56 -11.82 6.29 37.16 0.23 -11.59 16 15 C 0.05 1.25 1.64 -155.66 -0.26 1.00 16 16 C -0.54 -14.98 6.89 -34.44 -0.24 -15.21 16 17 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 18 C 0.10 2.71 5.39 -17.82 -0.10 2.61 16 19 N -0.87 -24.00 12.95 55.43 0.72 -23.28 16 20 Si 0.89 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.20 -4.46 9.88 -26.73 -0.26 -4.73 16 25 C -0.15 -3.32 9.49 -26.73 -0.25 -3.57 16 26 C 0.13 1.76 5.86 -5.20 -0.03 1.73 16 27 C -0.14 -1.85 4.94 -30.19 -0.15 -2.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.41 7.99 -51.93 -0.42 -0.01 16 34 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.07 1.09 6.83 -51.93 -0.35 0.73 16 36 H 0.06 0.75 7.78 -51.93 -0.40 0.35 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 39 H 0.06 0.65 6.87 -51.93 -0.36 0.30 16 40 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 41 H 0.13 2.68 8.14 -51.93 -0.42 2.26 16 42 H 0.09 1.65 7.95 -51.92 -0.41 1.24 16 43 H 0.27 7.02 8.32 -40.82 -0.34 6.68 16 44 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 45 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 46 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.10 1.51 7.27 -51.93 -0.38 1.13 16 49 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 50 H 0.08 1.21 6.93 -51.93 -0.36 0.85 16 51 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -32.37 408.51 -11.51 -43.88 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -9.27 Total: 3.79 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: -1.03 Total: -33.84 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.39 Total: -39.40 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -2.25 Total: -52.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 55.21 SS G_CDS: -0.49 Total: 54.72 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.37 -11.51 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574604815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.737 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds