Wall clock time and date at job start Wed Apr 1 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47262 * 2 1 4 4 O 1.42895 * 109.47507 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00289 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.21360 * 328.06924 * 5 4 3 7 7 C 1.50129 * 110.24817 * 90.00412 * 5 4 3 8 8 C 1.54846 * 110.81088 * 216.79866 * 7 5 4 9 9 C 1.54895 * 110.03274 * 321.19988 * 8 7 5 10 10 N 1.43340 * 116.13964 * 318.41356 * 9 8 7 11 11 S 1.65599 * 120.66610 * 271.75074 * 10 9 8 12 12 O 1.42104 * 104.27826 * 26.07491 * 11 10 9 13 13 O 1.42100 * 104.27772 * 153.92936 * 11 10 9 14 14 C 1.81400 * 104.45232 * 270.00025 * 11 10 9 15 15 C 1.52995 * 109.47212 * 173.83254 * 14 11 10 16 16 C 1.50700 * 115.55084 * 39.91633 * 15 14 11 17 17 H 1.07994 * 120.00700 * 264.80536 * 16 15 14 18 18 C 1.37877 * 119.99703 * 84.80003 * 16 15 14 19 19 N 1.31518 * 120.00367 * 353.18811 * 18 16 15 20 20 Si 1.86804 * 119.99957 * 173.18257 * 18 16 15 21 21 H 1.48498 * 109.47156 * 60.00557 * 20 18 16 22 22 H 1.48502 * 109.46968 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47070 * 299.99786 * 20 18 16 24 24 C 1.53003 * 117.50122 * 254.21308 * 15 14 11 25 25 C 1.53001 * 117.49718 * 185.58945 * 15 14 11 26 26 C 1.50168 * 118.79540 * 91.75522 * 10 9 8 27 27 C 1.46236 * 107.53141 * 289.61572 * 26 10 9 28 28 H 1.08995 * 109.46822 * 299.99454 * 1 2 3 29 29 H 1.08999 * 109.47014 * 60.00237 * 1 2 3 30 30 H 1.08999 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46965 * 239.99882 * 2 1 3 32 32 H 1.09003 * 109.46773 * 120.00477 * 2 1 3 33 33 H 1.09007 * 109.47227 * 60.00042 * 3 2 1 34 34 H 1.08998 * 109.47203 * 300.00547 * 3 2 1 35 35 H 1.09000 * 109.20920 * 96.45594 * 7 5 4 36 36 H 1.09003 * 109.20923 * 337.13768 * 7 5 4 37 37 H 1.09005 * 109.35565 * 81.33856 * 8 7 5 38 38 H 1.09002 * 109.35622 * 201.05767 * 8 7 5 39 39 H 1.08999 * 108.15815 * 80.29263 * 9 8 7 40 40 H 1.09000 * 108.15817 * 196.85936 * 9 8 7 41 41 H 1.08996 * 109.46997 * 293.83866 * 14 11 10 42 42 H 1.09004 * 109.46980 * 53.83552 * 14 11 10 43 43 H 0.96995 * 120.00600 * 185.02931 * 19 18 16 44 44 H 1.09000 * 117.49725 * 359.97438 * 24 15 14 45 45 H 1.08994 * 117.50287 * 145.02343 * 24 15 14 46 46 H 1.09002 * 117.49662 * 214.97606 * 25 15 14 47 47 H 1.09000 * 117.50178 * 359.97438 * 25 15 14 48 48 H 1.08996 * 109.84351 * 170.11029 * 26 10 9 49 49 H 1.09000 * 109.84613 * 49.12178 * 26 10 9 50 50 H 1.09001 * 108.52203 * 297.16773 * 27 26 10 51 51 H 1.09001 * 108.52359 * 179.65419 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0012 6 1 3.4106 3.4452 -0.5398 7 6 4.2611 3.2221 1.4100 8 6 3.9887 4.7421 1.5254 9 6 4.5247 5.4740 0.2699 10 7 5.8002 5.0388 -0.2184 11 16 7.1995 5.7099 0.3594 12 8 6.8584 6.1647 1.6618 13 8 8.1781 4.6971 0.1701 14 6 7.5165 7.1152 -0.7429 15 6 8.7098 7.9161 -0.2181 16 6 9.8513 7.0984 0.3290 17 1 9.9147 6.9004 1.3887 18 6 10.8149 6.6027 -0.5236 19 7 10.6690 6.7276 -1.8247 20 14 12.3279 5.7540 0.1693 21 1 11.9113 4.5719 0.9656 22 1 13.2043 5.3158 -0.9466 23 1 13.0713 6.7002 1.0396 24 6 8.4188 9.2605 0.4518 25 6 9.0568 9.2206 -0.9383 26 6 5.8453 3.9624 -1.2644 27 6 5.4400 2.7107 -0.6262 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.2900 3.0186 1.7067 36 1 3.5840 2.6850 2.0743 37 1 2.9153 4.9112 1.6116 38 1 4.4883 5.1323 2.4121 39 1 3.7942 5.3553 -0.5303 40 1 4.5973 6.5367 0.5014 41 1 7.7377 6.7482 -1.7451 42 1 6.6355 7.7562 -0.7770 43 1 11.3088 6.3158 -2.4263 44 1 7.3771 9.5746 0.5182 45 1 9.0529 9.5538 1.2884 46 1 10.1107 9.4876 -1.0161 47 1 8.4352 9.5081 -1.7863 48 1 6.8587 3.8677 -1.6544 49 1 5.1573 4.2045 -2.0745 50 1 6.1645 2.4679 0.1511 51 1 5.4612 1.9180 -1.3741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574604815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:32 Heat of formation + Delta-G solvation = -121.915291 kcal Electronic energy + Delta-G solvation = -30368.817355 eV Core-core repulsion = 26395.146610 eV Total energy + Delta-G solvation = -3973.670745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.56354 -38.54038 -38.13980 -37.87608 -36.59432 -34.83733 -34.11037 -33.61787 -32.93764 -29.84793 -27.63263 -27.35469 -26.80969 -25.46881 -22.97599 -22.87055 -22.22482 -21.44670 -21.16000 -19.51612 -18.54376 -18.31347 -17.56349 -17.35127 -16.92323 -16.67901 -16.54062 -16.06751 -15.82639 -15.59538 -15.42815 -15.02111 -14.85460 -14.62910 -14.10428 -14.02175 -13.88858 -13.73266 -13.40382 -13.25058 -13.06709 -13.03823 -12.91835 -12.87315 -12.76725 -12.71782 -12.44249 -12.34026 -12.20400 -12.09024 -12.00844 -11.87529 -11.72072 -11.59388 -11.55642 -11.51912 -11.20091 -10.87384 -10.52830 -10.40998 -10.10449 -9.77425 -8.24135 -6.41311 -0.42957 1.34267 1.38393 1.44377 2.07161 2.38252 2.66212 3.05811 3.16844 3.31968 3.49598 3.63217 3.76493 3.92636 4.03831 4.08868 4.13141 4.18894 4.22355 4.30782 4.32828 4.37694 4.45678 4.55260 4.59019 4.60371 4.67187 4.69590 4.75788 4.81272 4.83643 4.85586 4.90099 4.92170 4.97707 5.12381 5.18182 5.18981 5.21696 5.23861 5.27800 5.31309 5.38009 5.40356 5.41160 5.60476 5.67410 5.85469 6.20104 6.39643 6.67257 7.36076 8.82728 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003045 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.494056 B = 9192.730032 C = 9857.146260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.055 3.945 4 O -0.403 6.403 5 C 0.104 3.896 6 H 0.096 0.904 7 C -0.142 4.142 8 C -0.138 4.138 9 C 0.110 3.890 10 N -1.003 6.003 11 S 2.628 3.372 12 O -0.998 6.998 13 O -0.988 6.988 14 C -0.555 4.555 15 C 0.014 3.986 16 C -0.558 4.558 17 H 0.045 0.955 18 C 0.061 3.939 19 N -0.882 5.882 20 Si 0.923 3.077 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.264 1.264 24 C -0.190 4.190 25 C -0.142 4.142 26 C 0.127 3.873 27 C -0.139 4.139 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.267 0.733 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.117 0.883 50 H 0.044 0.956 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.900 -6.634 -2.030 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.021 4.021 4 O -0.323 6.323 5 C 0.047 3.953 6 H 0.113 0.887 7 C -0.180 4.180 8 C -0.178 4.178 9 C -0.016 4.016 10 N -0.841 5.841 11 S 2.726 3.274 12 O -0.988 6.988 13 O -0.978 6.978 14 C -0.687 4.687 15 C 0.012 3.988 16 C -0.595 4.595 17 H 0.063 0.937 18 C -0.145 4.145 19 N -0.517 5.517 20 Si 0.748 3.252 21 H -0.206 1.206 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.227 4.227 25 C -0.181 4.181 26 C 0.004 3.996 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.101 0.899 49 H 0.135 0.865 50 H 0.063 0.937 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.194 -7.125 -1.477 22.408 hybrid contribution 1.304 -0.001 0.114 1.309 sum -19.890 -7.126 -1.363 21.172 Atomic orbital electron populations 1.21675 0.93323 1.02756 1.02549 1.21480 0.96866 0.95202 1.02617 1.22751 0.79962 0.98379 1.00997 1.87892 1.20923 1.28290 1.95173 1.21277 0.94178 0.84490 0.95386 0.88670 1.22086 1.01061 0.96743 0.98109 1.22720 1.02568 0.93928 0.98580 1.20996 0.85116 0.98054 0.97468 1.57892 1.20809 1.51110 1.54260 1.04273 0.72036 0.75925 0.75123 1.93419 1.83514 1.83961 1.37905 1.93456 1.60537 1.56999 1.86817 1.29886 1.05831 1.17771 1.15221 1.18323 0.92683 0.86802 1.01031 1.20687 1.09511 1.35988 0.93336 0.93725 1.25398 0.99425 0.94554 0.95088 1.69964 1.37160 1.42361 1.02219 0.86146 0.80515 0.79471 0.79043 1.20638 1.19374 1.18899 1.23204 1.00856 1.02567 0.96102 1.22481 0.99220 1.02494 0.93868 1.20941 1.03770 0.84883 0.89982 1.20840 0.96033 0.99225 1.01728 0.92156 0.91793 0.91535 0.91638 0.92203 0.92818 0.91978 0.94623 0.91070 0.87510 0.92983 0.87247 0.90994 0.85961 0.84848 0.92352 0.87973 0.90318 0.91795 0.89383 0.89864 0.86519 0.93745 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.76 6.30 30.59 0.19 -1.56 16 3 C 0.06 0.87 5.73 71.98 0.41 1.29 16 4 O -0.40 -9.09 9.89 -148.98 -1.47 -10.57 16 5 C 0.10 2.27 2.35 29.51 0.07 2.34 16 6 H 0.10 1.56 5.99 -2.39 -0.01 1.55 16 7 C -0.14 -3.55 5.39 30.30 0.16 -3.39 16 8 C -0.14 -3.16 6.40 31.87 0.20 -2.95 16 9 C 0.11 2.51 4.65 87.61 0.41 2.91 16 10 N -1.00 -29.85 2.81 -521.47 -1.47 -31.32 16 11 S 2.63 111.63 4.53 -56.49 -0.26 111.37 16 12 O -1.00 -46.40 17.01 -127.65 -2.17 -48.57 16 13 O -0.99 -50.73 15.96 -127.65 -2.04 -52.77 16 14 C -0.55 -22.67 6.29 71.98 0.45 -22.21 16 15 C 0.01 0.66 1.64 -52.93 -0.09 0.57 16 16 C -0.56 -31.48 6.89 25.60 0.18 -31.31 16 17 H 0.04 2.64 7.82 -2.91 -0.02 2.62 16 18 C 0.06 3.41 5.39 84.65 0.46 3.86 16 19 N -0.88 -49.29 12.95 21.45 0.28 -49.02 16 20 Si 0.92 45.54 29.55 68.60 2.03 47.57 16 21 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.19 -8.00 9.88 30.60 0.30 -7.70 16 25 C -0.14 -6.32 9.49 30.60 0.29 -6.03 16 26 C 0.13 3.23 5.86 83.58 0.49 3.72 16 27 C -0.14 -3.58 4.94 28.36 0.14 -3.44 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.77 7.99 -2.38 -0.02 0.76 16 34 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 35 H 0.03 1.13 6.83 -2.39 -0.02 1.11 16 36 H 0.07 1.62 7.78 -2.39 -0.02 1.60 16 37 H 0.11 1.63 8.14 -2.38 -0.02 1.62 16 38 H 0.05 1.47 8.02 -2.39 -0.02 1.45 16 39 H 0.11 1.58 6.87 -2.39 -0.02 1.56 16 40 H 0.07 1.60 7.81 -2.39 -0.02 1.58 16 41 H 0.12 5.08 8.14 -2.39 -0.02 5.06 16 42 H 0.13 4.25 7.95 -2.39 -0.02 4.23 16 43 H 0.27 14.24 8.32 -92.71 -0.77 13.47 16 44 H 0.10 3.58 8.08 -2.39 -0.02 3.56 16 45 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 48 H 0.08 2.45 7.27 -2.39 -0.02 2.44 16 49 H 0.12 1.94 8.12 -2.39 -0.02 1.92 16 50 H 0.04 1.44 6.93 -2.39 -0.02 1.42 16 51 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -73.24 408.51 0.16 -73.08 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.88 Total: 24.84 kcal Atomic # 6 Polarization: -69.01 SS G_CDS: 4.38 Total: -64.63 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.19 Total: -80.33 kcal Atomic # 8 Polarization: -106.22 SS G_CDS: -5.68 Total: -111.90 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 111.63 SS G_CDS: -0.26 Total: 111.37 kcal Total: -73.24 0.16 -73.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574604815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.835 kcal (2) G-P(sol) polarization free energy of solvation -73.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds