Wall clock time and date at job start Wed Apr 1 2020 04:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.47290 * 2 1 4 4 O 1.42906 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.42901 * 113.99842 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.49318 * 30.04963 * 5 4 3 7 7 C 1.52566 * 109.49333 * 269.99838 * 5 4 3 8 8 C 1.47088 * 114.32584 * 155.02588 * 7 5 4 9 9 C 1.54859 * 110.32427 * 62.80294 * 8 7 5 10 10 N 1.44573 * 109.60229 * 288.73300 * 9 8 7 11 11 S 1.65601 * 118.64692 * 270.70619 * 10 9 8 12 12 O 1.42102 * 104.27147 * 333.92503 * 11 10 9 13 13 O 1.42094 * 104.27613 * 206.07006 * 11 10 9 14 14 C 1.81397 * 104.45037 * 89.99655 * 11 10 9 15 15 C 1.53005 * 109.46833 * 184.37314 * 14 11 10 16 16 C 1.50700 * 115.54715 * 294.69132 * 15 14 11 17 17 H 1.07998 * 119.99728 * 99.59072 * 16 15 14 18 18 C 1.37879 * 119.99649 * 279.58787 * 16 15 14 19 19 N 1.31510 * 120.00356 * 5.60032 * 18 16 15 20 20 Si 1.86809 * 119.99586 * 185.59418 * 18 16 15 21 21 H 1.48494 * 109.47066 * 270.00109 * 20 18 16 22 22 H 1.48496 * 109.46817 * 30.00417 * 20 18 16 23 23 H 1.48494 * 109.46878 * 150.00131 * 20 18 16 24 24 C 1.52997 * 117.51844 * 80.39784 * 15 14 11 25 25 C 1.52997 * 60.00285 * 107.47746 * 24 15 14 26 26 C 1.47605 * 122.71363 * 90.98256 * 10 9 8 27 27 C 1.50888 * 109.48383 * 150.11617 * 5 4 3 28 28 H 1.08998 * 109.46905 * 60.00013 * 1 2 3 29 29 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46816 * 300.00035 * 1 2 3 31 31 H 1.09001 * 109.46816 * 239.99965 * 2 1 3 32 32 H 1.09006 * 109.46860 * 120.00303 * 2 1 3 33 33 H 1.09001 * 109.47220 * 60.00212 * 3 2 1 34 34 H 1.09006 * 109.47417 * 299.99962 * 3 2 1 35 35 H 1.09001 * 108.50646 * 33.77134 * 7 5 4 36 36 H 1.08996 * 108.51240 * 276.28501 * 7 5 4 37 37 H 1.08999 * 109.33055 * 302.54196 * 8 7 5 38 38 H 1.09010 * 109.18763 * 182.98148 * 8 7 5 39 39 H 1.09003 * 109.44995 * 168.68770 * 9 8 7 40 40 H 1.09001 * 109.44660 * 48.77739 * 9 8 7 41 41 H 1.08994 * 109.47194 * 64.37376 * 14 11 10 42 42 H 1.09000 * 109.47322 * 304.36710 * 14 11 10 43 43 H 0.97002 * 119.99753 * 174.99401 * 19 18 16 44 44 H 1.08999 * 117.49220 * 214.97065 * 24 15 14 45 45 H 1.08993 * 117.49850 * 359.97438 * 24 15 14 46 46 H 1.08998 * 117.49767 * 252.51269 * 25 24 15 47 47 H 1.09000 * 117.51952 * 107.47779 * 25 24 15 48 48 H 1.09003 * 108.94896 * 78.29194 * 26 10 9 49 49 H 1.08993 * 108.95176 * 196.92777 * 26 10 9 50 50 H 1.08994 * 109.36699 * 332.04093 * 27 5 4 51 51 H 1.09000 * 109.36348 * 91.79095 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0503 2.7479 0.0001 6 1 3.3855 3.4422 0.5139 7 6 4.2580 3.2121 -1.4383 8 6 4.2891 4.6732 -1.6049 9 6 5.4864 5.2774 -0.8306 10 7 5.2327 5.2016 0.5907 11 16 4.4454 6.4599 1.3249 12 8 4.7362 7.5823 0.5033 13 8 4.8840 6.4075 2.6755 14 6 2.6884 6.0241 1.2088 15 6 1.8408 7.1716 1.7618 16 6 2.0038 7.4490 3.2341 17 1 2.6394 8.2575 3.5640 18 6 1.3416 6.6708 4.1597 19 7 0.6565 5.6198 3.7654 20 14 1.4177 7.1093 5.9740 21 1 2.5788 6.4272 6.5998 22 1 1.5683 8.5792 6.1220 23 1 0.1665 6.6701 6.6423 24 6 1.5822 8.3665 0.8420 25 6 0.4531 7.3820 1.1527 26 6 5.6518 4.0515 1.4156 27 6 5.3814 2.7065 0.7094 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.4509 2.8109 -2.0513 36 1 5.2003 2.8021 -1.8017 37 1 3.3611 5.0996 -1.2242 38 1 4.3875 4.9110 -2.6642 39 1 5.6174 6.3199 -1.1208 40 1 6.3915 4.7185 -1.0681 41 1 2.4991 5.1206 1.7882 42 1 2.4258 5.8486 0.1656 43 1 0.2511 5.0311 4.4213 44 1 1.5302 9.3534 1.3018 45 1 2.0164 8.3356 -0.1572 46 1 0.1443 6.7033 0.3577 47 1 -0.3420 7.7208 1.8169 48 1 6.7180 4.1366 1.6259 49 1 5.1040 4.0732 2.3576 50 1 5.3723 1.9055 1.4486 51 1 6.1723 2.5192 -0.0169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574604817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:37 Heat of formation + Delta-G solvation = -107.639985 kcal Electronic energy + Delta-G solvation = -31275.155567 eV Core-core repulsion = 27302.103845 eV Total energy + Delta-G solvation = -3973.051721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.45532 -37.13390 -36.79891 -36.36436 -35.11371 -33.95112 -32.95025 -32.07572 -31.69959 -28.23184 -26.45185 -25.93944 -25.46646 -24.59876 -21.62938 -21.30392 -21.19346 -20.41530 -19.38373 -18.26889 -17.28019 -16.71822 -16.48012 -16.27671 -15.82498 -15.26644 -14.97622 -14.71227 -14.52589 -14.39773 -13.92361 -13.86949 -13.55035 -13.30453 -13.06814 -12.78966 -12.70309 -12.62452 -12.02757 -11.99449 -11.85910 -11.64569 -11.50333 -11.36693 -11.26748 -11.24722 -11.04807 -10.95070 -10.93256 -10.72974 -10.68666 -10.64455 -10.54806 -10.48838 -10.45091 -10.12934 -9.71452 -9.42536 -8.99342 -8.79172 -8.60829 -8.09153 -6.16206 -4.26590 1.03063 3.27411 3.29719 3.35394 3.40145 3.61709 4.35852 4.55308 4.59099 4.71868 4.83674 4.91405 4.98517 4.98596 5.07583 5.09384 5.15055 5.20417 5.21612 5.28770 5.43029 5.45368 5.47965 5.55835 5.63955 5.70135 5.74574 5.80940 5.85251 5.89770 5.92745 5.97767 5.98076 6.06718 6.09425 6.16546 6.18306 6.20084 6.29748 6.32116 6.38770 6.59433 6.67971 6.91929 6.97852 7.21361 7.31508 7.34358 7.78392 8.17795 8.78651 9.44822 10.91456 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008981 B = 0.005142 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.801918 B = 5444.490593 C = 6870.865874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.057 3.943 4 O -0.386 6.386 5 C 0.091 3.909 6 H 0.068 0.932 7 C -0.134 4.134 8 C -0.147 4.147 9 C 0.114 3.886 10 N -1.005 6.005 11 S 2.600 3.400 12 O -0.971 6.971 13 O -0.947 6.947 14 C -0.555 4.555 15 C 0.046 3.954 16 C -0.514 4.514 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.875 5.875 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.285 1.285 24 C -0.208 4.208 25 C -0.144 4.144 26 C 0.124 3.876 27 C -0.127 4.127 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.263 0.737 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -9.753 -10.740 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.019 4.019 4 O -0.305 6.305 5 C 0.034 3.966 6 H 0.086 0.914 7 C -0.172 4.172 8 C -0.186 4.186 9 C -0.013 4.013 10 N -0.841 5.841 11 S 2.698 3.302 12 O -0.962 6.962 13 O -0.937 6.937 14 C -0.687 4.687 15 C 0.043 3.957 16 C -0.551 4.551 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.200 1.200 22 H -0.194 1.194 23 H -0.211 1.211 24 C -0.245 4.245 25 C -0.183 4.183 26 C -0.001 4.001 27 C -0.166 4.166 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.105 0.895 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.217 -9.319 -10.302 14.839 hybrid contribution -0.812 -0.277 0.628 1.063 sum 4.405 -9.597 -9.674 14.321 Atomic orbital electron populations 1.21706 0.94840 1.01926 1.02410 1.21430 0.95711 0.95761 1.02857 1.22622 0.81072 0.97550 1.00694 1.87861 1.19536 1.27972 1.95155 1.21545 0.95162 0.84553 0.95367 0.91420 1.20897 1.02779 0.96297 0.97240 1.21408 0.99934 0.96022 1.01284 1.21333 0.97706 1.02633 0.79608 1.57604 1.73968 1.36224 1.16299 1.05450 0.77787 0.73290 0.73711 1.93472 1.84221 1.48853 1.69646 1.93536 1.79971 1.85370 1.34816 1.30111 1.21276 1.10775 1.06579 1.18273 0.94938 0.89287 0.93180 1.20520 1.29427 1.17333 0.87788 0.91414 1.24934 0.93545 0.94631 0.99120 1.69962 1.33414 1.13517 1.34188 0.86591 0.77589 0.79429 0.84672 1.19983 1.19430 1.21087 1.23166 1.05861 0.95921 0.99600 1.22570 0.93119 1.01136 1.01518 1.21657 1.01055 0.84092 0.93309 1.21895 0.96227 0.97659 1.00778 0.92613 0.92282 0.92118 0.91584 0.91270 0.92610 0.93556 0.91995 0.91611 0.91617 0.90265 0.88784 0.90274 0.84891 0.88495 0.92772 0.89526 0.90657 0.91620 0.89627 0.91108 0.89203 0.89494 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.28 6.30 -26.73 -0.17 -1.45 16 3 C 0.06 0.72 5.68 37.15 0.21 0.93 16 4 O -0.39 -5.24 9.86 -35.23 -0.35 -5.59 16 5 C 0.09 1.19 2.22 -28.01 -0.06 1.13 16 6 H 0.07 1.00 6.26 -51.93 -0.32 0.67 16 7 C -0.13 -1.52 4.84 -29.79 -0.14 -1.66 16 8 C -0.15 -1.69 5.74 -28.59 -0.16 -1.85 16 9 C 0.11 1.44 5.60 -4.09 -0.02 1.41 16 10 N -1.01 -15.44 2.46 -113.11 -0.28 -15.72 16 11 S 2.60 52.92 5.07 -107.50 -0.54 52.37 16 12 O -0.97 -21.11 16.42 -57.54 -0.94 -22.06 16 13 O -0.95 -22.58 16.27 -57.54 -0.94 -23.52 16 14 C -0.55 -11.52 5.45 37.16 0.20 -11.32 16 15 C 0.05 1.09 1.26 -155.66 -0.20 0.90 16 16 C -0.51 -13.90 8.09 -34.44 -0.28 -14.18 16 17 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 18 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 19 N -0.88 -23.57 13.10 55.43 0.73 -22.84 16 20 Si 0.89 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.21 -4.51 9.96 -26.73 -0.27 -4.78 16 25 C -0.14 -3.22 9.68 -26.73 -0.26 -3.48 16 26 C 0.12 1.71 5.93 -2.75 -0.02 1.69 16 27 C -0.13 -1.50 5.43 -27.11 -0.15 -1.65 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.05 0.56 7.74 -51.93 -0.40 0.16 16 35 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 36 H 0.07 0.67 7.36 -51.93 -0.38 0.29 16 37 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 38 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.09 1.26 6.75 -51.93 -0.35 0.91 16 40 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 41 H 0.13 2.90 7.80 -51.93 -0.40 2.49 16 42 H 0.10 1.72 6.01 -51.92 -0.31 1.41 16 43 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 44 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 45 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.38 7.19 -51.93 -0.37 1.00 16 50 H 0.09 1.00 8.02 -51.93 -0.42 0.58 16 51 H 0.07 0.74 7.32 -51.93 -0.38 0.36 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -31.30 405.36 -11.36 -42.66 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -9.08 Total: 5.60 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -1.04 Total: -33.26 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.45 Total: -38.56 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -2.23 Total: -51.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.54 Total: 52.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.30 -11.36 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574604817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.983 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds