Wall clock time and date at job start Wed Apr 1 2020 04:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.47290 * 2 1 4 4 O 1.42906 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.42901 * 113.99842 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.49318 * 30.04963 * 5 4 3 7 7 C 1.52566 * 109.49333 * 269.99838 * 5 4 3 8 8 C 1.47088 * 114.32584 * 155.02588 * 7 5 4 9 9 C 1.54859 * 110.32427 * 62.80294 * 8 7 5 10 10 N 1.44573 * 109.60229 * 288.73300 * 9 8 7 11 11 S 1.65601 * 118.64692 * 270.70619 * 10 9 8 12 12 O 1.42102 * 104.27147 * 333.92503 * 11 10 9 13 13 O 1.42094 * 104.27613 * 206.07006 * 11 10 9 14 14 C 1.81397 * 104.45037 * 89.99655 * 11 10 9 15 15 C 1.53005 * 109.46833 * 184.37314 * 14 11 10 16 16 C 1.50700 * 115.54715 * 294.69132 * 15 14 11 17 17 H 1.07998 * 119.99728 * 99.59072 * 16 15 14 18 18 C 1.37879 * 119.99649 * 279.58787 * 16 15 14 19 19 N 1.31510 * 120.00356 * 5.60032 * 18 16 15 20 20 Si 1.86809 * 119.99586 * 185.59418 * 18 16 15 21 21 H 1.48494 * 109.47066 * 270.00109 * 20 18 16 22 22 H 1.48496 * 109.46817 * 30.00417 * 20 18 16 23 23 H 1.48494 * 109.46878 * 150.00131 * 20 18 16 24 24 C 1.52997 * 117.51844 * 80.39784 * 15 14 11 25 25 C 1.52997 * 60.00285 * 107.47746 * 24 15 14 26 26 C 1.47605 * 122.71363 * 90.98256 * 10 9 8 27 27 C 1.50888 * 109.48383 * 150.11617 * 5 4 3 28 28 H 1.08998 * 109.46905 * 60.00013 * 1 2 3 29 29 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46816 * 300.00035 * 1 2 3 31 31 H 1.09001 * 109.46816 * 239.99965 * 2 1 3 32 32 H 1.09006 * 109.46860 * 120.00303 * 2 1 3 33 33 H 1.09001 * 109.47220 * 60.00212 * 3 2 1 34 34 H 1.09006 * 109.47417 * 299.99962 * 3 2 1 35 35 H 1.09001 * 108.50646 * 33.77134 * 7 5 4 36 36 H 1.08996 * 108.51240 * 276.28501 * 7 5 4 37 37 H 1.08999 * 109.33055 * 302.54196 * 8 7 5 38 38 H 1.09010 * 109.18763 * 182.98148 * 8 7 5 39 39 H 1.09003 * 109.44995 * 168.68770 * 9 8 7 40 40 H 1.09001 * 109.44660 * 48.77739 * 9 8 7 41 41 H 1.08994 * 109.47194 * 64.37376 * 14 11 10 42 42 H 1.09000 * 109.47322 * 304.36710 * 14 11 10 43 43 H 0.97002 * 119.99753 * 174.99401 * 19 18 16 44 44 H 1.08999 * 117.49220 * 214.97065 * 24 15 14 45 45 H 1.08993 * 117.49850 * 359.97438 * 24 15 14 46 46 H 1.08998 * 117.49767 * 252.51269 * 25 24 15 47 47 H 1.09000 * 117.51952 * 107.47779 * 25 24 15 48 48 H 1.09003 * 108.94896 * 78.29194 * 26 10 9 49 49 H 1.08993 * 108.95176 * 196.92777 * 26 10 9 50 50 H 1.08994 * 109.36699 * 332.04093 * 27 5 4 51 51 H 1.09000 * 109.36348 * 91.79095 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0503 2.7479 0.0001 6 1 3.3855 3.4422 0.5139 7 6 4.2580 3.2121 -1.4383 8 6 4.2891 4.6732 -1.6049 9 6 5.4864 5.2774 -0.8306 10 7 5.2327 5.2016 0.5907 11 16 4.4454 6.4599 1.3249 12 8 4.7362 7.5823 0.5033 13 8 4.8840 6.4075 2.6755 14 6 2.6884 6.0241 1.2088 15 6 1.8408 7.1716 1.7618 16 6 2.0038 7.4490 3.2341 17 1 2.6394 8.2575 3.5640 18 6 1.3416 6.6708 4.1597 19 7 0.6565 5.6198 3.7654 20 14 1.4177 7.1093 5.9740 21 1 2.5788 6.4272 6.5998 22 1 1.5683 8.5792 6.1220 23 1 0.1665 6.6701 6.6423 24 6 1.5822 8.3665 0.8420 25 6 0.4531 7.3820 1.1527 26 6 5.6518 4.0515 1.4156 27 6 5.3814 2.7065 0.7094 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.4509 2.8109 -2.0513 36 1 5.2003 2.8021 -1.8017 37 1 3.3611 5.0996 -1.2242 38 1 4.3875 4.9110 -2.6642 39 1 5.6174 6.3199 -1.1208 40 1 6.3915 4.7185 -1.0681 41 1 2.4991 5.1206 1.7882 42 1 2.4258 5.8486 0.1656 43 1 0.2511 5.0311 4.4213 44 1 1.5302 9.3534 1.3018 45 1 2.0164 8.3356 -0.1572 46 1 0.1443 6.7033 0.3577 47 1 -0.3420 7.7208 1.8169 48 1 6.7180 4.1366 1.6259 49 1 5.1040 4.0732 2.3576 50 1 5.3723 1.9055 1.4486 51 1 6.1723 2.5192 -0.0169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574604817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:36 Heat of formation + Delta-G solvation = -126.338885 kcal Electronic energy + Delta-G solvation = -31275.966412 eV Core-core repulsion = 27302.103845 eV Total energy + Delta-G solvation = -3973.862566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.46491 -38.60578 -38.22564 -38.02225 -36.81962 -34.88864 -34.11751 -33.94451 -32.70925 -29.92205 -27.56640 -27.39003 -26.90429 -25.60431 -23.03514 -22.56871 -22.37904 -21.42206 -21.13418 -19.67696 -18.70242 -18.34767 -17.77642 -17.51768 -16.91980 -16.79441 -16.68711 -16.19577 -15.73079 -15.62068 -15.50405 -14.99825 -14.87009 -14.63496 -14.10573 -13.90521 -13.87076 -13.71571 -13.56465 -13.52098 -13.16022 -13.05143 -12.95985 -12.93108 -12.88652 -12.62715 -12.46825 -12.44029 -12.26025 -12.24746 -11.96804 -11.93981 -11.71693 -11.65314 -11.63199 -11.47731 -11.43104 -10.89789 -10.58964 -10.42097 -10.15740 -9.73925 -8.21188 -6.35685 -0.55260 1.35988 1.39056 1.46785 1.87772 2.37667 2.62987 2.95231 3.05424 3.29479 3.38301 3.60106 3.78528 3.85468 4.00709 4.02347 4.08077 4.10245 4.15915 4.21821 4.29217 4.36427 4.45954 4.47286 4.52181 4.56581 4.60811 4.66439 4.73392 4.82040 4.85273 4.86190 4.88017 4.93790 4.99514 5.10014 5.11206 5.16496 5.17133 5.21833 5.28139 5.30278 5.35240 5.37504 5.45056 5.54928 5.69791 5.82750 6.20227 6.30919 6.69588 7.36539 8.85552 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008981 B = 0.005142 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.801918 B = 5444.490593 C = 6870.865874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.055 3.945 4 O -0.392 6.392 5 C 0.083 3.917 6 H 0.043 0.957 7 C -0.130 4.130 8 C -0.146 4.146 9 C 0.104 3.896 10 N -0.994 5.994 11 S 2.611 3.389 12 O -0.988 6.988 13 O -0.991 6.991 14 C -0.548 4.548 15 C 0.012 3.988 16 C -0.532 4.532 17 H 0.047 0.953 18 C 0.044 3.956 19 N -0.890 5.890 20 Si 0.932 3.068 21 H -0.277 1.277 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.196 4.196 25 C -0.141 4.141 26 C 0.119 3.881 27 C -0.118 4.118 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.265 0.735 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -11.069 -12.884 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.021 4.021 4 O -0.312 6.312 5 C 0.026 3.974 6 H 0.061 0.939 7 C -0.167 4.167 8 C -0.185 4.185 9 C -0.021 4.021 10 N -0.832 5.832 11 S 2.709 3.291 12 O -0.978 6.978 13 O -0.981 6.981 14 C -0.680 4.680 15 C 0.010 3.990 16 C -0.569 4.569 17 H 0.065 0.935 18 C -0.159 4.159 19 N -0.526 5.526 20 Si 0.757 3.243 21 H -0.203 1.203 22 H -0.193 1.193 23 H -0.198 1.198 24 C -0.233 4.233 25 C -0.180 4.180 26 C -0.006 4.006 27 C -0.157 4.157 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.083 0.917 50 H 0.107 0.893 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.034 -10.621 -12.447 17.440 hybrid contribution -1.037 0.119 1.255 1.633 sum 4.996 -10.502 -11.192 16.141 Atomic orbital electron populations 1.21705 0.94071 1.02905 1.02016 1.21425 0.96325 0.94382 1.03189 1.22679 0.80829 0.98774 0.99840 1.87844 1.19858 1.28272 1.95230 1.21676 0.95099 0.83958 0.96700 0.93915 1.20846 1.04002 0.96128 0.95747 1.21433 0.98439 0.95915 1.02671 1.21671 0.99785 1.03113 0.77560 1.57230 1.72889 1.35446 1.17661 1.04799 0.77576 0.73895 0.72856 1.93437 1.84332 1.50445 1.69620 1.93474 1.80590 1.86376 1.37647 1.29979 1.21615 1.08673 1.07774 1.18402 0.96685 0.91530 0.92349 1.20678 1.29240 1.16928 0.90079 0.93456 1.25487 0.93589 0.94768 1.02043 1.70009 1.33801 1.13840 1.34986 0.85945 0.77817 0.79171 0.81353 1.20326 1.19303 1.19752 1.23214 1.04855 0.95100 1.00120 1.22523 0.92200 1.01696 1.01546 1.21830 1.01768 0.84491 0.92488 1.21863 0.96473 0.96157 1.01236 0.92115 0.90627 0.93400 0.90438 0.91662 0.94966 0.92941 0.91684 0.89525 0.93300 0.87409 0.89448 0.86847 0.86543 0.85670 0.92617 0.89856 0.88299 0.89567 0.91429 0.89051 0.91698 0.89262 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.98 16 2 C -0.12 -2.33 6.30 30.59 0.19 -2.14 16 3 C 0.06 1.37 5.68 71.98 0.41 1.78 16 4 O -0.39 -10.15 9.86 -148.98 -1.47 -11.62 16 5 C 0.08 2.04 2.22 29.76 0.07 2.11 16 6 H 0.04 1.26 6.26 -2.39 -0.01 1.24 16 7 C -0.13 -2.51 4.84 28.61 0.14 -2.37 16 8 C -0.15 -2.89 5.74 29.39 0.17 -2.72 16 9 C 0.10 2.32 5.60 87.37 0.49 2.81 16 10 N -0.99 -29.33 2.46 -511.76 -1.26 -30.59 16 11 S 2.61 107.00 5.07 -56.49 -0.29 106.71 16 12 O -0.99 -42.60 16.42 -127.65 -2.10 -44.70 16 13 O -0.99 -48.79 16.27 -127.65 -2.08 -50.87 16 14 C -0.55 -23.00 5.45 71.98 0.39 -22.60 16 15 C 0.01 0.60 1.26 -52.93 -0.07 0.54 16 16 C -0.53 -29.63 8.09 25.60 0.21 -29.42 16 17 H 0.05 2.75 7.82 -2.91 -0.02 2.72 16 18 C 0.04 2.43 5.42 84.66 0.46 2.89 16 19 N -0.89 -48.91 13.10 21.45 0.28 -48.63 16 20 Si 0.93 44.27 29.55 68.60 2.03 46.29 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 C -0.20 -8.39 9.96 30.59 0.30 -8.09 16 25 C -0.14 -6.27 9.68 30.59 0.30 -5.97 16 26 C 0.12 3.15 5.93 86.61 0.51 3.67 16 27 C -0.12 -2.55 5.43 30.35 0.16 -2.39 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.03 0.93 8.09 -2.39 -0.02 0.92 16 34 H 0.05 1.21 7.74 -2.38 -0.02 1.20 16 35 H 0.06 1.24 7.57 -2.39 -0.02 1.23 16 36 H 0.09 1.35 7.36 -2.39 -0.02 1.33 16 37 H 0.05 1.14 5.97 -2.39 -0.01 1.12 16 38 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.09 2.12 6.75 -2.39 -0.02 2.11 16 40 H 0.11 1.82 8.07 -2.39 -0.02 1.80 16 41 H 0.12 5.27 7.80 -2.39 -0.02 5.25 16 42 H 0.13 4.37 6.01 -2.39 -0.01 4.35 16 43 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 44 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 45 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 46 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 47 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.06 2.05 7.19 -2.39 -0.02 2.04 16 50 H 0.09 1.90 8.02 -2.39 -0.02 1.88 16 51 H 0.10 1.63 7.32 -2.39 -0.02 1.61 16 Total: -1.00 -68.63 405.36 0.46 -68.17 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.89 Total: 29.12 kcal Atomic # 6 Polarization: -68.34 SS G_CDS: 4.45 Total: -63.90 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -0.98 Total: -79.22 kcal Atomic # 8 Polarization: -101.54 SS G_CDS: -5.64 Total: -107.18 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 107.00 SS G_CDS: -0.29 Total: 106.71 kcal Total: -68.63 0.46 -68.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574604817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.172 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds