Wall clock time and date at job start Wed Apr 1 2020 04:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 O 1.21295 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.46822 * 120.00122 * 180.02562 * 3 2 1 6 6 C 1.40062 * 120.10298 * 179.97438 * 5 3 2 7 7 C 1.36594 * 119.89946 * 180.27289 * 6 5 3 8 8 C 1.39222 * 120.10515 * 359.52066 * 7 6 5 9 9 N 1.39295 * 119.90600 * 180.23000 * 8 7 6 10 10 C 1.34781 * 120.00255 * 145.06752 * 9 8 7 11 11 O 1.21577 * 119.99540 * 4.75717 * 10 9 8 12 12 N 1.34775 * 119.99981 * 184.75253 * 10 9 8 13 13 C 1.47079 * 120.88264 * 5.02700 * 12 10 9 14 14 C 1.53690 * 108.27728 * 128.75366 * 13 12 10 15 15 N 1.46900 * 109.25734 * 54.07918 * 14 13 12 16 16 C 1.46903 * 110.99837 * 172.60680 * 15 14 13 17 17 C 1.50703 * 109.47150 * 294.30294 * 16 15 14 18 18 H 1.07994 * 120.00065 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99725 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99541 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46999 * 90.00131 * 21 19 17 23 23 H 1.48501 * 109.47197 * 210.00079 * 21 19 17 24 24 H 1.48493 * 109.47223 * 330.00612 * 21 19 17 25 25 C 1.46890 * 111.27172 * 296.75770 * 15 14 13 26 26 C 1.47083 * 120.87866 * 185.30199 * 12 10 9 27 27 C 1.39230 * 120.19614 * 0.45967 * 8 7 6 28 28 C 1.36599 * 120.10188 * 359.79210 * 27 8 7 29 29 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46943 * 300.00562 * 1 2 3 31 31 H 1.09005 * 109.46661 * 60.00305 * 1 2 3 32 32 H 1.08994 * 109.47069 * 239.99434 * 2 1 3 33 33 H 1.09005 * 109.46661 * 119.99695 * 2 1 3 34 34 H 1.08002 * 120.04753 * 359.97438 * 6 5 3 35 35 H 1.08008 * 119.95306 * 179.74372 * 7 6 5 36 36 H 0.96996 * 119.99793 * 325.07613 * 9 8 7 37 37 H 1.09002 * 109.62346 * 248.52391 * 13 12 10 38 38 H 1.08998 * 109.62710 * 9.09968 * 13 12 10 39 39 H 1.08995 * 109.65060 * 294.07711 * 14 13 12 40 40 H 1.08998 * 109.42192 * 173.94194 * 14 13 12 41 41 H 1.08999 * 109.47232 * 54.30220 * 16 15 14 42 42 H 1.09003 * 109.46981 * 174.30800 * 16 15 14 43 43 H 0.97003 * 119.99376 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.49275 * 303.14464 * 25 15 14 45 45 H 1.08999 * 109.49465 * 183.06208 * 25 15 14 46 46 H 1.08997 * 109.62549 * 350.90084 * 26 12 10 47 47 H 1.08999 * 109.62571 * 111.47680 * 26 12 10 48 48 H 1.07995 * 119.94475 * 179.77337 * 27 8 7 49 49 H 1.07999 * 120.04839 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 6 3.4759 1.6891 -0.0006 6 6 3.9452 3.0088 -0.0011 7 6 5.2890 3.2536 -0.0073 8 6 6.1919 2.1939 -0.0029 9 7 7.5614 2.4483 -0.0044 10 6 8.3990 1.6335 0.6672 11 8 7.9711 0.6290 1.2020 12 7 9.7109 1.9323 0.7460 13 6 10.2314 3.1956 0.2017 14 6 11.0693 3.8814 1.2924 15 7 12.0931 2.9458 1.7768 16 6 13.0263 3.6148 2.6931 17 6 13.8108 4.6570 1.9385 18 1 13.6342 4.8071 0.8837 19 6 14.7549 5.4182 2.5946 20 7 15.4391 6.3281 1.9361 21 14 15.0609 5.1582 4.4189 22 1 16.1208 4.1343 4.6019 23 1 15.4965 6.4372 5.0350 24 1 13.8088 4.6962 5.0699 25 6 11.4828 1.7705 2.4125 26 6 10.6609 1.0009 1.3731 27 6 5.7301 0.8804 -0.0020 28 6 4.3880 0.6261 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2455 3.8315 -0.0015 35 1 5.6518 4.2709 -0.0119 36 1 7.9123 3.2120 -0.4887 37 1 10.8549 2.9900 -0.6684 38 1 9.4008 3.8411 -0.0838 39 1 10.4239 4.1749 2.1202 40 1 11.5524 4.7654 0.8762 41 1 12.4664 4.0929 3.4969 42 1 13.7113 2.8793 3.1149 43 1 16.1030 6.8639 2.3978 44 1 10.8316 2.0934 3.2248 45 1 12.2657 1.1237 2.8086 46 1 10.1143 0.1947 1.8624 47 1 11.3249 0.5885 0.6135 48 1 6.4341 0.0614 -0.0023 49 1 4.0307 -0.3931 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000640375959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:39 Heat of formation + Delta-G solvation = -17.047964 kcal Electronic energy + Delta-G solvation = -29347.823369 eV Core-core repulsion = 25275.548812 eV Total energy + Delta-G solvation = -4072.274557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.15279 -40.13169 -38.77841 -37.65779 -35.11785 -34.63869 -33.31464 -32.48525 -31.38159 -31.06518 -30.14514 -28.70055 -26.15184 -25.29586 -23.67630 -23.20234 -22.95996 -21.80593 -20.81281 -19.94724 -19.53041 -18.59592 -17.64219 -17.07043 -16.89158 -16.11698 -15.78239 -15.66043 -15.41930 -14.78939 -14.72675 -14.67139 -14.39951 -14.28385 -14.00272 -13.84523 -13.69767 -13.60277 -13.28592 -13.02387 -12.74039 -12.58480 -12.48340 -12.26516 -12.13086 -11.65949 -11.54712 -11.54001 -11.29089 -11.24676 -10.92753 -10.68209 -10.64951 -10.43845 -10.12744 -9.98628 -9.92278 -9.42777 -9.34295 -8.79222 -8.67001 -8.33598 -7.57351 -6.15854 -4.14298 0.34320 1.16630 2.07895 2.35541 2.93437 3.21244 3.29370 3.30760 3.53438 3.60955 3.72015 4.32724 4.44889 4.49133 4.62667 4.66735 4.73607 4.85483 4.98044 4.99746 5.09343 5.14402 5.19862 5.22755 5.24154 5.34198 5.44766 5.44978 5.54019 5.54884 5.60970 5.72542 5.81376 5.84061 5.92837 5.96826 6.07002 6.09665 6.18741 6.23426 6.28573 6.40508 6.68809 6.71012 6.72278 6.83083 7.27060 7.44257 7.58633 7.71995 7.85071 8.27868 8.51604 8.90429 9.45525 10.96805 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.001814 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.298108 B =15435.840659 C =15807.688178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.172 4.172 3 C 0.399 3.601 4 O -0.461 6.461 5 C -0.202 4.202 6 C -0.037 4.037 7 C -0.166 4.166 8 C 0.209 3.791 9 N -0.688 5.688 10 C 0.707 3.293 11 O -0.577 6.577 12 N -0.618 5.618 13 C 0.111 3.889 14 C 0.050 3.950 15 N -0.525 5.525 16 C 0.162 3.838 17 C -0.514 4.514 18 H 0.081 0.919 19 C 0.070 3.930 20 N -0.897 5.897 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.037 3.963 26 C 0.135 3.865 27 C -0.138 4.138 28 C -0.050 4.050 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.410 0.590 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.105 0.895 41 H -0.011 1.011 42 H 0.027 0.973 43 H 0.265 0.735 44 H 0.028 0.972 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.149 0.851 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.197 -11.749 -5.909 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.209 4.209 3 C 0.278 3.722 4 O -0.337 6.337 5 C -0.204 4.204 6 C -0.056 4.056 7 C -0.187 4.187 8 C 0.111 3.889 9 N -0.336 5.336 10 C 0.409 3.591 11 O -0.455 6.455 12 N -0.354 5.354 13 C -0.012 4.012 14 C -0.079 4.079 15 N -0.250 5.250 16 C 0.036 3.964 17 C -0.552 4.552 18 H 0.099 0.901 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.093 4.093 26 C 0.012 3.988 27 C -0.158 4.158 28 C -0.069 4.069 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.249 0.751 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.123 0.877 41 H 0.007 0.993 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.166 0.834 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.378 -12.007 -5.866 26.928 hybrid contribution 0.342 0.745 1.516 1.724 sum -23.036 -11.262 -4.350 26.008 Atomic orbital electron populations 1.21594 0.93707 1.01765 1.03051 1.21997 0.98288 0.95923 1.04684 1.22392 0.87855 0.91139 0.70853 1.90516 1.58466 1.47787 1.36918 1.20440 0.94843 0.94386 1.10748 1.20904 0.94883 0.96237 0.93560 1.20668 0.92844 0.98465 1.06681 1.17865 0.82094 0.93892 0.95010 1.42799 1.04884 1.32191 1.53721 1.15787 0.81094 0.82879 0.79297 1.90891 1.75499 1.27351 1.51725 1.47474 1.05002 1.21590 1.61379 1.22062 0.97360 0.83749 0.98040 1.22429 0.92768 0.96564 0.96109 1.61896 1.15998 1.07296 1.39821 1.20187 0.90968 0.94175 0.91030 1.20987 1.19578 1.16733 0.97899 0.90065 1.24890 0.95512 0.94867 0.97916 1.69886 1.24647 1.22737 1.36331 0.86873 0.78989 0.77875 0.86078 1.20067 1.21141 1.19349 1.22487 0.97309 0.94550 0.94930 1.21708 0.89786 0.91353 0.95905 1.21121 0.96159 0.96317 1.02211 1.21080 0.92393 0.98625 0.94840 0.92067 0.92150 0.92156 0.88312 0.88289 0.84690 0.85011 0.75098 0.89913 0.91024 0.95528 0.87734 0.99308 0.95512 0.92553 0.95337 0.89787 0.88976 0.90610 0.83374 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.57 16 2 C -0.17 -1.04 5.02 -27.88 -0.14 -1.18 16 3 C 0.40 3.72 7.10 -30.84 -0.22 3.50 16 4 O -0.46 -5.64 15.96 5.54 0.09 -5.55 16 5 C -0.20 -1.92 5.87 -105.06 -0.62 -2.54 16 6 C -0.04 -0.36 9.54 -39.49 -0.38 -0.73 16 7 C -0.17 -1.55 9.90 -39.81 -0.39 -1.94 16 8 C 0.21 2.23 6.30 -83.73 -0.53 1.71 16 9 N -0.69 -7.30 5.17 -14.21 -0.07 -7.37 16 10 C 0.71 9.54 8.15 -86.92 -0.71 8.84 16 11 O -0.58 -9.23 13.20 5.30 0.07 -9.16 16 12 N -0.62 -8.20 3.00 -177.91 -0.53 -8.73 16 13 C 0.11 1.37 6.52 -3.37 -0.02 1.35 16 14 C 0.05 0.83 5.47 -3.47 -0.02 0.81 16 15 N -0.53 -9.88 4.62 -235.47 -1.09 -10.97 16 16 C 0.16 3.68 3.79 -4.97 -0.02 3.66 16 17 C -0.51 -13.67 8.96 -34.44 -0.31 -13.98 16 18 H 0.08 2.32 7.37 -52.49 -0.39 1.94 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 21 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 25 C 0.04 0.58 5.62 -3.71 -0.02 0.56 16 26 C 0.14 1.84 6.61 -3.60 -0.02 1.82 16 27 C -0.14 -1.48 8.62 -39.80 -0.34 -1.83 16 28 C -0.05 -0.44 9.42 -39.49 -0.37 -0.81 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.14 1.23 7.64 -52.49 -0.40 0.83 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.41 3.34 6.45 -40.82 -0.26 3.08 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.66 5.84 -51.93 -0.30 0.36 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.91 6.67 -51.93 -0.35 1.57 16 41 H -0.01 -0.25 7.18 -51.93 -0.37 -0.63 16 42 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 46 H 0.09 1.24 7.04 -51.93 -0.37 0.87 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.15 1.77 6.20 -52.49 -0.33 1.45 16 49 H 0.13 0.79 7.03 -52.49 -0.37 0.42 16 LS Contribution 391.96 15.07 5.91 5.91 Total: -1.00 -32.75 391.96 -10.71 -43.46 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.32 Total: 1.47 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.87 Total: 0.49 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.92 Total: -52.63 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.16 Total: -14.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.75 -10.71 -43.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640375959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.408 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds