Wall clock time and date at job start Wed Apr 1 2020 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 O 1.21295 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.46822 * 120.00122 * 180.02562 * 3 2 1 6 6 C 1.40062 * 120.10298 * 179.97438 * 5 3 2 7 7 C 1.36594 * 119.89946 * 180.27289 * 6 5 3 8 8 C 1.39222 * 120.10515 * 359.52066 * 7 6 5 9 9 N 1.39295 * 119.90600 * 180.23000 * 8 7 6 10 10 C 1.34781 * 120.00255 * 145.06752 * 9 8 7 11 11 O 1.21577 * 119.99540 * 4.75717 * 10 9 8 12 12 N 1.34775 * 119.99981 * 184.75253 * 10 9 8 13 13 C 1.47079 * 120.88264 * 5.02700 * 12 10 9 14 14 C 1.53690 * 108.27728 * 128.75366 * 13 12 10 15 15 N 1.46900 * 109.25734 * 54.07918 * 14 13 12 16 16 C 1.46903 * 110.99837 * 172.60680 * 15 14 13 17 17 C 1.50703 * 109.47150 * 294.30294 * 16 15 14 18 18 H 1.07994 * 120.00065 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99725 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99541 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46999 * 90.00131 * 21 19 17 23 23 H 1.48501 * 109.47197 * 210.00079 * 21 19 17 24 24 H 1.48493 * 109.47223 * 330.00612 * 21 19 17 25 25 C 1.46890 * 111.27172 * 296.75770 * 15 14 13 26 26 C 1.47083 * 120.87866 * 185.30199 * 12 10 9 27 27 C 1.39230 * 120.19614 * 0.45967 * 8 7 6 28 28 C 1.36599 * 120.10188 * 359.79210 * 27 8 7 29 29 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46943 * 300.00562 * 1 2 3 31 31 H 1.09005 * 109.46661 * 60.00305 * 1 2 3 32 32 H 1.08994 * 109.47069 * 239.99434 * 2 1 3 33 33 H 1.09005 * 109.46661 * 119.99695 * 2 1 3 34 34 H 1.08002 * 120.04753 * 359.97438 * 6 5 3 35 35 H 1.08008 * 119.95306 * 179.74372 * 7 6 5 36 36 H 0.96996 * 119.99793 * 325.07613 * 9 8 7 37 37 H 1.09002 * 109.62346 * 248.52391 * 13 12 10 38 38 H 1.08998 * 109.62710 * 9.09968 * 13 12 10 39 39 H 1.08995 * 109.65060 * 294.07711 * 14 13 12 40 40 H 1.08998 * 109.42192 * 173.94194 * 14 13 12 41 41 H 1.08999 * 109.47232 * 54.30220 * 16 15 14 42 42 H 1.09003 * 109.46981 * 174.30800 * 16 15 14 43 43 H 0.97003 * 119.99376 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.49275 * 303.14464 * 25 15 14 45 45 H 1.08999 * 109.49465 * 183.06208 * 25 15 14 46 46 H 1.08997 * 109.62549 * 350.90084 * 26 12 10 47 47 H 1.08999 * 109.62571 * 111.47680 * 26 12 10 48 48 H 1.07995 * 119.94475 * 179.77337 * 27 8 7 49 49 H 1.07999 * 120.04839 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 6 3.4759 1.6891 -0.0006 6 6 3.9452 3.0088 -0.0011 7 6 5.2890 3.2536 -0.0073 8 6 6.1919 2.1939 -0.0029 9 7 7.5614 2.4483 -0.0044 10 6 8.3990 1.6335 0.6672 11 8 7.9711 0.6290 1.2020 12 7 9.7109 1.9323 0.7460 13 6 10.2314 3.1956 0.2017 14 6 11.0693 3.8814 1.2924 15 7 12.0931 2.9458 1.7768 16 6 13.0263 3.6148 2.6931 17 6 13.8108 4.6570 1.9385 18 1 13.6342 4.8071 0.8837 19 6 14.7549 5.4182 2.5946 20 7 15.4391 6.3281 1.9361 21 14 15.0609 5.1582 4.4189 22 1 16.1208 4.1343 4.6019 23 1 15.4965 6.4372 5.0350 24 1 13.8088 4.6962 5.0699 25 6 11.4828 1.7705 2.4125 26 6 10.6609 1.0009 1.3731 27 6 5.7301 0.8804 -0.0020 28 6 4.3880 0.6261 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2455 3.8315 -0.0015 35 1 5.6518 4.2709 -0.0119 36 1 7.9123 3.2120 -0.4887 37 1 10.8549 2.9900 -0.6684 38 1 9.4008 3.8411 -0.0838 39 1 10.4239 4.1749 2.1202 40 1 11.5524 4.7654 0.8762 41 1 12.4664 4.0929 3.4969 42 1 13.7113 2.8793 3.1149 43 1 16.1030 6.8639 2.3978 44 1 10.8316 2.0934 3.2248 45 1 12.2657 1.1237 2.8086 46 1 10.1143 0.1947 1.8624 47 1 11.3249 0.5885 0.6135 48 1 6.4341 0.0614 -0.0023 49 1 4.0307 -0.3931 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000640375959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:38 Heat of formation + Delta-G solvation = -37.854966 kcal Electronic energy + Delta-G solvation = -29348.725628 eV Core-core repulsion = 25275.548812 eV Total energy + Delta-G solvation = -4073.176816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.09429 -40.94829 -39.76090 -38.77500 -36.13518 -35.92541 -34.43077 -33.87576 -32.24198 -32.07472 -31.11164 -30.22865 -27.47469 -26.16131 -24.81345 -24.09369 -23.84455 -23.16312 -22.13190 -20.64146 -20.59240 -19.57439 -18.92607 -18.54160 -17.82667 -17.02977 -16.79577 -16.48805 -16.38004 -16.31435 -16.04762 -15.70775 -15.47314 -15.30215 -15.17958 -15.02060 -14.66386 -14.45426 -14.38346 -14.25530 -13.86576 -13.61763 -13.51195 -13.17489 -13.09497 -12.91056 -12.64839 -12.54448 -12.39248 -12.25883 -12.23359 -12.00906 -11.95957 -11.85027 -11.56506 -11.42005 -11.12069 -10.77651 -10.66858 -10.07664 -9.90245 -9.20835 -9.05446 -8.28104 -6.30907 -0.41119 0.43502 1.29566 1.34961 1.36569 1.42532 1.45713 1.94831 2.33851 2.63026 2.82938 3.04480 3.08789 3.13685 3.77850 3.86975 3.93063 4.00829 4.05782 4.10967 4.21993 4.28173 4.29721 4.30018 4.37885 4.39660 4.50263 4.55881 4.72252 4.78896 4.81344 4.83667 4.92905 4.97615 5.01133 5.04089 5.07629 5.10619 5.15869 5.19479 5.31998 5.35343 5.41255 5.43976 5.52312 5.74698 5.92056 5.96276 6.28484 6.58081 6.58219 6.66492 6.75483 7.27675 7.32880 8.87601 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.001814 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.298108 B =15435.840659 C =15807.688178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.398 3.602 4 O -0.498 6.498 5 C -0.209 4.209 6 C -0.048 4.048 7 C -0.161 4.161 8 C 0.191 3.809 9 N -0.676 5.676 10 C 0.707 3.293 11 O -0.603 6.603 12 N -0.620 5.620 13 C 0.122 3.878 14 C 0.051 3.949 15 N -0.536 5.536 16 C 0.171 3.829 17 C -0.513 4.513 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.944 5.944 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.256 1.256 25 C 0.039 3.961 26 C 0.142 3.858 27 C -0.151 4.151 28 C -0.040 4.040 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.151 0.849 36 H 0.422 0.578 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.021 0.979 40 H 0.080 0.920 41 H -0.017 1.017 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.021 0.979 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.136 0.864 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.524 -13.518 -5.486 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.280 3.720 4 O -0.376 6.376 5 C -0.211 4.211 6 C -0.067 4.067 7 C -0.182 4.182 8 C 0.095 3.905 9 N -0.325 5.325 10 C 0.409 3.591 11 O -0.482 6.482 12 N -0.356 5.356 13 C -0.001 4.001 14 C -0.078 4.078 15 N -0.261 5.261 16 C 0.044 3.956 17 C -0.552 4.552 18 H 0.066 0.934 19 C -0.186 4.186 20 N -0.585 5.585 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.180 1.180 25 C -0.090 4.090 26 C 0.019 3.981 27 C -0.172 4.172 28 C -0.059 4.059 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.262 0.738 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.039 0.961 40 H 0.098 0.902 41 H 0.001 0.999 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.154 0.846 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.729 -13.784 -5.468 28.834 hybrid contribution 0.677 1.293 1.300 1.955 sum -24.051 -12.490 -4.168 27.420 Atomic orbital electron populations 1.21607 0.94086 1.02715 1.01804 1.22078 0.97944 0.93828 1.06693 1.22879 0.87468 0.92306 0.69364 1.90509 1.59136 1.49163 1.38839 1.20639 0.95305 0.94595 1.10578 1.21077 0.95177 0.96706 0.93722 1.20805 0.92454 0.99084 1.05817 1.18046 0.82102 0.94383 0.95990 1.42619 1.04701 1.31993 1.53220 1.15855 0.81093 0.82867 0.79240 1.90876 1.75887 1.28592 1.52891 1.47463 1.05059 1.21637 1.61448 1.22002 0.98049 0.83716 0.96300 1.22407 0.92401 0.96004 0.97021 1.61814 1.16902 1.08185 1.39178 1.19946 0.91442 0.93319 0.90910 1.21224 1.19661 1.17498 0.96771 0.93433 1.25746 0.95441 0.94635 1.02738 1.70030 1.25813 1.24197 1.38412 0.85810 0.79435 0.77943 0.80293 1.19059 1.21020 1.18008 1.22545 0.97627 0.93456 0.95327 1.21622 0.89729 0.91112 0.95624 1.21150 0.96820 0.96067 1.03152 1.21312 0.91399 0.99894 0.93251 0.89954 0.93569 0.93319 0.85874 0.86292 0.84584 0.83176 0.73751 0.89327 0.87575 0.96070 0.90213 0.99923 0.95121 0.92488 0.96027 0.88821 0.88499 0.89678 0.84613 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.20 71.98 0.66 -0.95 16 2 C -0.17 -1.61 5.02 29.85 0.15 -1.46 16 3 C 0.40 6.88 7.10 27.93 0.20 7.08 16 4 O -0.50 -12.05 15.96 -3.08 -0.05 -12.10 16 5 C -0.21 -3.64 5.87 -20.15 -0.12 -3.76 16 6 C -0.05 -0.87 9.54 22.33 0.21 -0.66 16 7 C -0.16 -2.74 9.90 22.12 0.22 -2.52 16 8 C 0.19 3.78 6.30 38.43 0.24 4.03 16 9 N -0.68 -13.02 5.17 -317.14 -1.64 -14.66 16 10 C 0.71 17.83 8.15 179.05 1.46 19.29 16 11 O -0.60 -18.46 13.20 -3.96 -0.05 -18.51 16 12 N -0.62 -15.30 3.00 -835.06 -2.51 -17.81 16 13 C 0.12 2.81 6.52 86.50 0.56 3.38 16 14 C 0.05 1.66 5.47 86.54 0.47 2.13 16 15 N -0.54 -19.86 4.62 -898.91 -4.15 -24.01 16 16 C 0.17 7.68 3.79 85.56 0.32 8.00 16 17 C -0.51 -27.82 8.96 25.60 0.23 -27.59 16 18 H 0.05 2.83 7.37 -2.91 -0.02 2.81 16 19 C 0.01 0.68 5.47 84.66 0.46 1.14 16 20 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 21 Si 0.94 42.55 27.47 68.60 1.88 44.44 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -10.95 6.54 99.48 0.65 -10.30 16 25 C 0.04 1.18 5.62 86.38 0.49 1.67 16 26 C 0.14 3.61 6.61 86.35 0.57 4.18 16 27 C -0.15 -3.02 8.62 22.12 0.19 -2.83 16 28 C -0.04 -0.61 9.42 22.33 0.21 -0.40 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.64 8.10 -2.38 -0.02 0.62 16 31 H 0.05 0.65 8.10 -2.38 -0.02 0.63 16 32 H 0.12 0.62 8.08 -2.39 -0.02 0.61 16 33 H 0.12 0.72 8.08 -2.38 -0.02 0.70 16 34 H 0.14 2.40 7.64 -2.91 -0.02 2.38 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.42 5.82 6.45 -92.71 -0.60 5.22 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 1.69 5.84 -2.39 -0.01 1.68 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 3.00 6.67 -2.39 -0.02 2.98 16 41 H -0.02 -0.78 7.18 -2.39 -0.02 -0.79 16 42 H 0.03 1.36 7.40 -2.39 -0.02 1.34 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 2.61 7.99 -2.39 -0.02 2.60 16 46 H 0.10 2.43 7.04 -2.39 -0.02 2.41 16 47 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.14 3.10 6.20 -2.91 -0.02 3.08 16 49 H 0.16 1.39 7.03 -2.91 -0.02 1.37 16 Total: -1.00 -72.51 391.96 0.63 -71.87 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.32 Total: 16.42 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.54 Total: 10.73 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -8.00 Total: -112.85 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.10 Total: -30.61 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.44 kcal Total: -72.51 0.63 -71.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640375959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.019 kcal (2) G-P(sol) polarization free energy of solvation -72.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds