Wall clock time and date at job start Wed Apr 1 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47169 * 2 1 4 4 O 1.21290 * 120.00042 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00144 * 180.02562 * 3 2 1 6 6 C 1.39959 * 120.00313 * 185.36900 * 5 3 2 7 7 C 1.38993 * 120.00423 * 214.57095 * 6 5 3 8 8 C 1.38208 * 120.22227 * 179.97438 * 7 6 5 9 9 C 1.38018 * 120.22880 * 0.02562 * 8 7 6 10 10 C 1.39578 * 119.99329 * 359.97438 * 9 8 7 11 11 C 1.47860 * 120.11203 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99994 * 188.24994 * 11 10 9 13 13 N 1.34771 * 119.99727 * 8.25722 * 11 10 9 14 14 C 1.47471 * 125.62638 * 174.66884 * 13 11 10 15 15 C 1.54914 * 104.80709 * 204.13405 * 14 13 11 16 16 C 1.55156 * 101.61918 * 323.03966 * 15 14 13 17 17 H 1.08995 * 110.72325 * 276.94861 * 16 15 14 18 18 N 1.46496 * 110.71795 * 153.84420 * 16 15 14 19 19 C 1.46496 * 120.00652 * 300.00139 * 18 16 15 20 20 C 1.36945 * 119.99628 * 120.00319 * 18 16 15 21 21 H 1.08000 * 119.99598 * 34.11133 * 20 18 16 22 22 C 1.38809 * 119.99870 * 214.11043 * 20 18 16 23 23 N 1.31615 * 120.00368 * 5.40950 * 22 20 18 24 24 Si 1.86804 * 119.99833 * 185.41496 * 22 20 18 25 25 H 1.48494 * 109.47243 * 59.99521 * 24 22 20 26 26 H 1.48501 * 109.47297 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46757 * 299.99550 * 24 22 20 28 28 C 1.47019 * 125.65174 * 354.74211 * 13 11 10 29 29 C 1.38602 * 119.99545 * 34.85194 * 6 5 3 30 30 H 1.08993 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46910 * 300.00079 * 1 2 3 32 32 H 1.08994 * 109.47170 * 59.99806 * 1 2 3 33 33 H 1.09004 * 109.46910 * 239.99920 * 2 1 3 34 34 H 1.08994 * 109.47170 * 120.00193 * 2 1 3 35 35 H 0.96998 * 120.00171 * 5.36980 * 5 3 2 36 36 H 1.08003 * 119.88484 * 0.02681 * 7 6 5 37 37 H 1.08008 * 119.88202 * 179.97438 * 8 7 6 38 38 H 1.07996 * 120.00525 * 179.97438 * 9 8 7 39 39 H 1.08995 * 110.34971 * 85.31848 * 14 13 11 40 40 H 1.09001 * 110.40369 * 322.97417 * 14 13 11 41 41 H 1.09000 * 110.99973 * 204.94558 * 15 14 13 42 42 H 1.08998 * 111.00352 * 81.13557 * 15 14 13 43 43 H 1.09001 * 109.47159 * 85.09867 * 19 18 16 44 44 H 1.08993 * 109.47539 * 205.09906 * 19 18 16 45 45 H 1.09001 * 109.47112 * 325.10279 * 19 18 16 46 46 H 0.97000 * 120.00618 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.88231 * 59.49025 * 28 13 11 48 48 H 1.09000 * 109.88386 * 298.32796 * 28 13 11 49 49 H 1.08000 * 120.11085 * 359.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8250 2.9813 0.1129 7 6 4.9793 3.3687 -0.5576 8 6 5.4447 4.6655 -0.4492 9 6 4.7669 5.5846 0.3259 10 6 3.6068 5.2056 1.0032 11 6 2.8789 6.1879 1.8348 12 8 1.9592 5.8233 2.5410 13 7 3.2352 7.4874 1.8097 14 6 2.5304 8.5848 2.4979 15 6 2.9043 9.8582 1.6988 16 6 4.3830 9.5707 1.3269 17 1 5.0466 9.8392 2.1488 18 7 4.7585 10.2862 0.1049 19 6 4.0425 10.0253 -1.1462 20 6 5.7791 11.1990 0.1322 21 1 6.6280 11.0405 0.7808 22 6 5.7223 12.3277 -0.6737 23 7 4.6423 12.5759 -1.3837 24 14 7.1791 13.4945 -0.7507 25 1 8.3742 12.7626 -1.2419 26 1 6.8686 14.6138 -1.6759 27 1 7.4524 14.0352 0.6052 28 6 4.3896 8.0457 1.0905 29 6 3.1402 3.8951 0.8985 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9870 0.9335 -0.0795 36 1 5.5137 2.6541 -1.1660 37 1 6.3425 4.9605 -0.9722 38 1 5.1341 6.5968 0.4084 39 1 2.8748 8.6690 3.5286 40 1 1.4531 8.4216 2.4691 41 1 2.8243 10.7484 2.3227 42 1 2.2880 9.9535 0.8049 43 1 3.1453 10.6430 -1.1870 44 1 4.6877 10.2657 -1.9911 45 1 3.7615 8.9731 -1.1914 46 1 4.6025 13.3648 -1.9466 47 1 4.2996 7.8353 0.0249 48 1 5.3123 7.6145 1.4790 49 1 2.2454 3.5949 1.4236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971636146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:52 Heat of formation + Delta-G solvation = 8.111866 kcal Electronic energy + Delta-G solvation = -30317.438385 eV Core-core repulsion = 26246.254841 eV Total energy + Delta-G solvation = -4071.183545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.88942 -39.99618 -38.28971 -37.33120 -35.06349 -34.69389 -33.21797 -31.82352 -31.21150 -30.40986 -29.20380 -27.89967 -26.07598 -25.12361 -24.72651 -23.21480 -22.35850 -21.80858 -20.48966 -19.78656 -19.44446 -17.87694 -17.49526 -17.03999 -16.47607 -16.03903 -15.87515 -15.84954 -15.15371 -14.75832 -14.68965 -14.33771 -13.99141 -13.82966 -13.57249 -13.39999 -13.35174 -12.94169 -12.70948 -12.64664 -12.59411 -12.47115 -12.12602 -11.89848 -11.66343 -11.55285 -11.51105 -11.11926 -10.94763 -10.80700 -10.59860 -10.51012 -10.42746 -10.25604 -10.06848 -9.98565 -9.92411 -9.59248 -9.01994 -8.59215 -8.33423 -8.28026 -6.70927 -5.84866 -3.40809 0.83171 1.24261 2.31035 2.71045 2.99525 3.24040 3.33251 3.39256 3.39397 3.89615 4.27729 4.39413 4.58262 4.65732 4.68837 4.83066 4.95292 5.08055 5.10477 5.21495 5.27487 5.35443 5.39127 5.41531 5.43567 5.47339 5.57029 5.62759 5.77676 5.82822 5.88323 5.90447 5.98820 6.10095 6.16538 6.22463 6.32107 6.37181 6.39264 6.57666 6.65409 6.78293 6.86253 6.90698 7.06467 7.24179 7.62209 7.72736 7.77767 7.84401 8.36771 8.38910 9.14305 9.72952 10.28277 11.21212 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002384 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.878826 B =11743.001769 C =12438.233172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.511 6.511 5 N -0.676 5.676 6 C 0.128 3.872 7 C -0.124 4.124 8 C -0.107 4.107 9 C -0.133 4.133 10 C -0.108 4.108 11 C 0.570 3.430 12 O -0.546 6.546 13 N -0.604 5.604 14 C 0.108 3.892 15 C -0.150 4.150 16 C 0.170 3.830 17 H 0.081 0.919 18 N -0.583 5.583 19 C 0.157 3.843 20 C -0.269 4.269 21 H 0.066 0.934 22 C 0.014 3.986 23 N -0.899 5.899 24 Si 0.906 3.094 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.065 3.935 29 C -0.064 4.064 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.410 0.590 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.169 0.831 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.023 0.977 44 H 0.051 0.949 45 H -0.001 1.001 46 H 0.256 0.744 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -23.797 2.100 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.385 6.385 5 N -0.323 5.323 6 C 0.035 3.965 7 C -0.144 4.144 8 C -0.126 4.126 9 C -0.151 4.151 10 C -0.112 4.112 11 C 0.360 3.640 12 O -0.426 6.426 13 N -0.337 5.337 14 C -0.015 4.015 15 C -0.191 4.191 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.304 5.304 19 C 0.012 3.988 20 C -0.398 4.398 21 H 0.083 0.917 22 C -0.186 4.186 23 N -0.541 5.541 24 Si 0.735 3.265 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.059 4.059 29 C -0.085 4.085 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.246 0.754 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.186 0.814 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.017 0.983 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.363 -23.271 2.326 23.426 hybrid contribution 1.107 0.305 -0.301 1.187 sum -0.256 -22.966 2.025 23.057 Atomic orbital electron populations 1.21559 0.92623 1.01816 1.03760 1.21634 0.99048 0.92849 1.04545 1.21069 0.81620 0.92470 0.75563 1.90803 1.54869 1.46309 1.46477 1.43552 1.07918 1.07022 1.73762 1.17544 0.95853 0.85131 0.98005 1.21075 0.96811 0.97233 0.99330 1.20995 1.00260 0.92342 0.98984 1.22991 0.94143 1.02835 0.95141 1.19758 0.96972 0.93973 1.00508 1.17892 0.83249 0.80973 0.81894 1.90744 1.30882 1.78747 1.42188 1.48342 1.29347 1.05934 1.50083 1.22290 0.97185 0.86014 0.95974 1.23374 1.00119 0.95428 1.00141 1.21426 0.93563 0.87917 0.91146 0.90050 1.43752 1.38638 1.45441 1.02520 1.20786 0.96586 0.93134 0.88259 1.19073 0.96842 0.99006 1.24899 0.91668 1.25315 0.96762 0.96695 0.99815 1.69990 1.26592 1.27540 1.30020 0.86345 0.82026 0.80527 0.77616 1.20838 1.21605 1.20730 1.23279 0.87220 0.97984 0.97420 1.21137 0.99937 0.91574 0.95810 0.91846 0.91705 0.91788 0.88689 0.88547 0.75421 0.85537 0.84844 0.81407 0.91675 0.91065 0.90264 0.90625 0.95878 0.92997 0.98311 0.93425 0.89595 0.91013 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -0.82 6.42 -27.88 -0.18 -1.00 16 3 C 0.51 5.23 7.55 -10.99 -0.08 5.15 16 4 O -0.51 -7.89 13.78 5.55 0.08 -7.82 16 5 N -0.68 -5.94 5.34 -9.89 -0.05 -6.00 16 6 C 0.13 1.54 6.24 -83.73 -0.52 1.02 16 7 C -0.12 -1.27 9.96 -39.31 -0.39 -1.66 16 8 C -0.11 -1.21 10.02 -39.67 -0.40 -1.61 16 9 C -0.13 -1.83 8.59 -39.16 -0.34 -2.17 16 10 C -0.11 -1.74 5.87 -104.99 -0.62 -2.36 16 11 C 0.57 10.49 7.81 -12.33 -0.10 10.39 16 12 O -0.55 -11.57 16.67 5.32 0.09 -11.48 16 13 N -0.60 -10.38 3.33 -175.08 -0.58 -10.97 16 14 C 0.11 1.77 6.89 -2.50 -0.02 1.75 16 15 C -0.15 -2.68 6.65 -24.58 -0.16 -2.84 16 16 C 0.17 3.22 3.45 -66.10 -0.23 3.00 16 17 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 18 N -0.58 -13.50 2.90 -171.40 -0.50 -14.00 16 19 C 0.16 3.63 7.98 59.84 0.48 4.11 16 20 C -0.27 -6.88 9.48 -15.06 -0.14 -7.02 16 21 H 0.07 1.62 7.83 -52.49 -0.41 1.21 16 22 C 0.01 0.38 5.17 -17.43 -0.09 0.29 16 23 N -0.90 -25.11 11.10 55.49 0.62 -24.50 16 24 Si 0.91 20.79 29.56 -169.99 -5.02 15.77 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.07 1.07 4.46 -3.06 -0.01 1.06 16 29 C -0.06 -0.98 8.19 -38.98 -0.32 -1.30 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.41 1.88 8.82 -40.82 -0.36 1.52 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.17 2.32 2.77 -57.01 -0.16 2.16 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.48 7.17 -51.93 -0.37 1.11 16 43 H 0.02 0.58 7.49 -51.93 -0.39 0.19 16 44 H 0.05 1.30 7.25 -51.93 -0.38 0.92 16 45 H 0.00 -0.03 6.05 -51.93 -0.31 -0.34 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.09 1.48 4.42 -51.93 -0.23 1.25 16 48 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16 49 H 0.14 2.50 6.14 -52.49 -0.32 2.18 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -33.82 390.06 -9.33 -43.15 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.05 Total: 3.81 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.78 Total: 6.15 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.52 Total: -55.46 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.82 -9.33 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971636146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.264 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds