Wall clock time and date at job start Wed Apr 1 2020 04:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47169 * 2 1 4 4 O 1.21290 * 120.00042 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00144 * 180.02562 * 3 2 1 6 6 C 1.39959 * 120.00313 * 185.36900 * 5 3 2 7 7 C 1.38993 * 120.00423 * 214.57095 * 6 5 3 8 8 C 1.38208 * 120.22227 * 179.97438 * 7 6 5 9 9 C 1.38018 * 120.22880 * 0.02562 * 8 7 6 10 10 C 1.39578 * 119.99329 * 359.97438 * 9 8 7 11 11 C 1.47860 * 120.11203 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99994 * 188.24994 * 11 10 9 13 13 N 1.34771 * 119.99727 * 8.25722 * 11 10 9 14 14 C 1.47471 * 125.62638 * 174.66884 * 13 11 10 15 15 C 1.54914 * 104.80709 * 204.13405 * 14 13 11 16 16 C 1.55156 * 101.61918 * 323.03966 * 15 14 13 17 17 H 1.08995 * 110.72325 * 276.94861 * 16 15 14 18 18 N 1.46496 * 110.71795 * 153.84420 * 16 15 14 19 19 C 1.46496 * 120.00652 * 300.00139 * 18 16 15 20 20 C 1.36945 * 119.99628 * 120.00319 * 18 16 15 21 21 H 1.08000 * 119.99598 * 34.11133 * 20 18 16 22 22 C 1.38809 * 119.99870 * 214.11043 * 20 18 16 23 23 N 1.31615 * 120.00368 * 5.40950 * 22 20 18 24 24 Si 1.86804 * 119.99833 * 185.41496 * 22 20 18 25 25 H 1.48494 * 109.47243 * 59.99521 * 24 22 20 26 26 H 1.48501 * 109.47297 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46757 * 299.99550 * 24 22 20 28 28 C 1.47019 * 125.65174 * 354.74211 * 13 11 10 29 29 C 1.38602 * 119.99545 * 34.85194 * 6 5 3 30 30 H 1.08993 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46910 * 300.00079 * 1 2 3 32 32 H 1.08994 * 109.47170 * 59.99806 * 1 2 3 33 33 H 1.09004 * 109.46910 * 239.99920 * 2 1 3 34 34 H 1.08994 * 109.47170 * 120.00193 * 2 1 3 35 35 H 0.96998 * 120.00171 * 5.36980 * 5 3 2 36 36 H 1.08003 * 119.88484 * 0.02681 * 7 6 5 37 37 H 1.08008 * 119.88202 * 179.97438 * 8 7 6 38 38 H 1.07996 * 120.00525 * 179.97438 * 9 8 7 39 39 H 1.08995 * 110.34971 * 85.31848 * 14 13 11 40 40 H 1.09001 * 110.40369 * 322.97417 * 14 13 11 41 41 H 1.09000 * 110.99973 * 204.94558 * 15 14 13 42 42 H 1.08998 * 111.00352 * 81.13557 * 15 14 13 43 43 H 1.09001 * 109.47159 * 85.09867 * 19 18 16 44 44 H 1.08993 * 109.47539 * 205.09906 * 19 18 16 45 45 H 1.09001 * 109.47112 * 325.10279 * 19 18 16 46 46 H 0.97000 * 120.00618 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.88231 * 59.49025 * 28 13 11 48 48 H 1.09000 * 109.88386 * 298.32796 * 28 13 11 49 49 H 1.08000 * 120.11085 * 359.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8250 2.9813 0.1129 7 6 4.9793 3.3687 -0.5576 8 6 5.4447 4.6655 -0.4492 9 6 4.7669 5.5846 0.3259 10 6 3.6068 5.2056 1.0032 11 6 2.8789 6.1879 1.8348 12 8 1.9592 5.8233 2.5410 13 7 3.2352 7.4874 1.8097 14 6 2.5304 8.5848 2.4979 15 6 2.9043 9.8582 1.6988 16 6 4.3830 9.5707 1.3269 17 1 5.0466 9.8392 2.1488 18 7 4.7585 10.2862 0.1049 19 6 4.0425 10.0253 -1.1462 20 6 5.7791 11.1990 0.1322 21 1 6.6280 11.0405 0.7808 22 6 5.7223 12.3277 -0.6737 23 7 4.6423 12.5759 -1.3837 24 14 7.1791 13.4945 -0.7507 25 1 8.3742 12.7626 -1.2419 26 1 6.8686 14.6138 -1.6759 27 1 7.4524 14.0352 0.6052 28 6 4.3896 8.0457 1.0905 29 6 3.1402 3.8951 0.8985 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9870 0.9335 -0.0795 36 1 5.5137 2.6541 -1.1660 37 1 6.3425 4.9605 -0.9722 38 1 5.1341 6.5968 0.4084 39 1 2.8748 8.6690 3.5286 40 1 1.4531 8.4216 2.4691 41 1 2.8243 10.7484 2.3227 42 1 2.2880 9.9535 0.8049 43 1 3.1453 10.6430 -1.1870 44 1 4.6877 10.2657 -1.9911 45 1 3.7615 8.9731 -1.1914 46 1 4.6025 13.3648 -1.9466 47 1 4.2996 7.8353 0.0249 48 1 5.3123 7.6145 1.4790 49 1 2.2454 3.5949 1.4236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971636146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:51 Heat of formation + Delta-G solvation = -13.877631 kcal Electronic energy + Delta-G solvation = -30318.391921 eV Core-core repulsion = 26246.254841 eV Total energy + Delta-G solvation = -4072.137081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.91768 -41.17492 -39.40248 -38.80626 -36.51228 -35.92796 -33.85318 -33.44723 -32.54820 -31.57977 -30.46663 -29.32216 -28.00558 -26.12235 -25.83921 -24.71654 -23.41546 -23.04946 -21.33719 -21.05146 -20.98989 -19.00252 -18.83161 -18.29978 -17.61035 -17.49459 -17.00118 -16.77026 -16.55706 -16.28871 -15.73335 -15.57431 -15.20321 -15.06223 -14.87495 -14.73590 -14.49721 -14.32109 -14.24046 -13.97510 -13.67720 -13.38131 -13.17804 -13.01952 -12.81560 -12.76631 -12.69506 -12.60241 -12.52854 -12.33739 -12.13186 -12.05324 -11.89466 -11.75779 -11.55207 -11.46284 -11.04628 -10.93663 -10.56749 -10.08666 -9.68305 -9.23865 -8.62707 -7.83826 -5.41728 -0.22220 0.24571 1.48862 1.52401 1.53190 1.59631 1.75077 1.84211 2.07716 2.52700 2.81890 3.28657 3.32943 3.64662 3.69832 3.71738 3.90000 3.93272 4.07836 4.17590 4.21938 4.24861 4.25487 4.29036 4.37754 4.46130 4.48054 4.55505 4.71016 4.74723 4.85754 4.92839 4.94509 4.96143 5.02846 5.08021 5.15696 5.21735 5.25604 5.29039 5.32408 5.36378 5.39994 5.43438 5.68140 5.70789 5.91641 6.35059 6.39870 6.43206 6.97533 7.13986 7.17610 7.83147 8.34601 9.20774 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002384 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.878826 B =11743.001769 C =12438.233172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.497 3.503 4 O -0.572 6.572 5 N -0.660 5.660 6 C 0.127 3.873 7 C -0.104 4.104 8 C -0.102 4.102 9 C -0.138 4.138 10 C -0.134 4.134 11 C 0.564 3.436 12 O -0.587 6.587 13 N -0.605 5.605 14 C 0.112 3.888 15 C -0.141 4.141 16 C 0.164 3.836 17 H 0.090 0.910 18 N -0.595 5.595 19 C 0.174 3.826 20 C -0.269 4.269 21 H 0.075 0.925 22 C -0.041 4.041 23 N -0.934 5.934 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.300 1.300 27 H -0.275 1.275 28 C 0.080 3.920 29 C -0.088 4.088 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.434 0.566 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.053 0.947 43 H -0.006 1.006 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.249 0.751 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -26.583 1.684 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.287 3.713 4 O -0.450 6.450 5 N -0.308 5.308 6 C 0.033 3.967 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.156 4.156 10 C -0.137 4.137 11 C 0.356 3.644 12 O -0.469 6.469 13 N -0.336 5.336 14 C -0.010 4.010 15 C -0.181 4.181 16 C 0.056 3.944 17 H 0.108 0.892 18 N -0.316 5.316 19 C 0.029 3.971 20 C -0.399 4.399 21 H 0.093 0.907 22 C -0.238 4.238 23 N -0.578 5.578 24 Si 0.796 3.204 25 H -0.199 1.199 26 H -0.227 1.227 27 H -0.201 1.201 28 C -0.043 4.043 29 C -0.109 4.109 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.274 0.726 36 H 0.190 0.810 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.012 0.988 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.115 0.885 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.661 -26.111 1.933 26.235 hybrid contribution 0.170 1.060 -0.162 1.085 sum 1.831 -25.052 1.771 25.181 Atomic orbital electron populations 1.21582 0.93995 1.02870 1.01593 1.21715 0.97732 0.89935 1.07520 1.22019 0.81533 0.93780 0.73943 1.90794 1.56437 1.48491 1.49257 1.43489 1.08093 1.06581 1.72647 1.17696 0.95999 0.85951 0.97088 1.21533 0.95381 0.97650 0.97830 1.21409 1.00664 0.92192 0.97739 1.22959 0.93603 1.03404 0.95679 1.19652 0.98364 0.93740 1.01976 1.18396 0.82900 0.81480 0.81658 1.90707 1.32764 1.79413 1.44050 1.48387 1.29466 1.05838 1.49947 1.22274 0.97021 0.85029 0.96664 1.23213 0.99044 0.96371 0.99499 1.21582 0.94079 0.88990 0.89787 0.89187 1.43881 1.38423 1.45592 1.03725 1.20486 0.94787 0.93907 0.87885 1.19451 0.97565 0.98893 1.24016 0.90718 1.26050 0.99101 0.98458 1.00162 1.70162 1.28546 1.27897 1.31207 0.85345 0.79342 0.78271 0.77425 1.19928 1.22671 1.20059 1.23146 0.87975 0.95975 0.97233 1.21007 0.99839 0.92516 0.97541 0.89017 0.94226 0.93749 0.85123 0.85680 0.72594 0.80969 0.81601 0.81650 0.89731 0.91655 0.89806 0.92814 0.98753 0.95338 0.95808 0.94203 0.90095 0.88480 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.20 71.98 0.66 -1.27 16 2 C -0.13 -1.18 6.42 29.85 0.19 -0.99 16 3 C 0.50 9.86 7.55 87.66 0.66 10.52 16 4 O -0.57 -18.57 13.78 -3.06 -0.04 -18.61 16 5 N -0.66 -10.01 5.34 -303.60 -1.62 -11.63 16 6 C 0.13 2.83 6.24 38.11 0.24 3.07 16 7 C -0.10 -1.70 9.96 22.44 0.22 -1.47 16 8 C -0.10 -1.92 10.02 22.21 0.22 -1.69 16 9 C -0.14 -3.58 8.59 22.54 0.19 -3.39 16 10 C -0.13 -4.35 5.87 -20.10 -0.12 -4.47 16 11 C 0.56 21.45 7.81 86.79 0.68 22.13 16 12 O -0.59 -26.29 16.67 -3.89 -0.06 -26.35 16 13 N -0.60 -20.85 3.33 -826.09 -2.75 -23.60 16 14 C 0.11 3.70 6.89 86.85 0.60 4.30 16 15 C -0.14 -5.06 6.65 31.99 0.21 -4.84 16 16 C 0.16 6.11 3.45 46.18 0.16 6.27 16 17 H 0.09 3.21 7.95 -2.39 -0.02 3.19 16 18 N -0.59 -27.44 2.90 -696.18 -2.02 -29.45 16 19 C 0.17 8.21 7.98 127.77 1.02 9.23 16 20 C -0.27 -13.61 9.48 84.03 0.80 -12.82 16 21 H 0.08 3.59 7.83 -2.91 -0.02 3.56 16 22 C -0.04 -2.19 5.17 84.86 0.44 -1.75 16 23 N -0.93 -53.28 11.10 21.65 0.24 -53.04 16 24 Si 0.97 42.64 29.56 68.60 2.03 44.67 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.08 2.56 4.46 86.73 0.39 2.95 16 29 C -0.09 -2.78 8.19 22.66 0.19 -2.60 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.72 8.10 -2.38 -0.02 0.70 16 32 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.43 2.19 8.82 -92.71 -0.82 1.37 16 36 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.17 4.26 2.77 -7.16 -0.02 4.24 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 2.24 8.09 -2.39 -0.02 2.22 16 41 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.05 2.17 7.17 -2.39 -0.02 2.15 16 43 H -0.01 -0.31 7.49 -2.39 -0.02 -0.33 16 44 H 0.03 1.44 7.25 -2.39 -0.02 1.42 16 45 H 0.02 0.98 6.05 -2.39 -0.01 0.97 16 46 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 47 H 0.08 2.71 4.42 -2.39 -0.01 2.70 16 48 H 0.10 2.66 6.79 -2.39 -0.02 2.64 16 49 H 0.11 4.18 6.14 -2.91 -0.02 4.16 16 Total: -1.00 -79.22 390.06 2.68 -76.53 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.16 Total: 18.32 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.75 Total: 23.18 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.15 Total: -117.72 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.11 Total: -44.96 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -79.22 2.68 -76.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971636146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.653 kcal (2) G-P(sol) polarization free energy of solvation -79.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds