Wall clock time and date at job start Wed Apr 1 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47199 * 2 1 4 4 O 1.21286 * 120.00190 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00220 * 179.97438 * 3 2 1 6 6 C 1.39950 * 120.00481 * 184.96281 * 5 3 2 7 7 C 1.38986 * 120.00259 * 213.73862 * 6 5 3 8 8 C 1.38214 * 120.22277 * 179.97438 * 7 6 5 9 9 C 1.38020 * 120.22321 * 359.97438 * 8 7 6 10 10 C 1.39574 * 119.99762 * 0.02562 * 9 8 7 11 11 C 1.47857 * 120.11152 * 180.27325 * 10 9 8 12 12 O 1.21551 * 120.00025 * 206.24358 * 11 10 9 13 13 N 1.34777 * 119.99750 * 26.24580 * 11 10 9 14 14 C 1.47423 * 125.64898 * 356.21106 * 13 11 10 15 15 C 1.55136 * 104.71952 * 155.81647 * 14 13 11 16 16 C 1.55155 * 101.48668 * 37.29584 * 15 14 13 17 17 H 1.08993 * 110.72374 * 82.69328 * 16 15 14 18 18 N 1.46506 * 110.71686 * 205.96769 * 16 15 14 19 19 C 1.46498 * 119.99857 * 54.97218 * 18 16 15 20 20 C 1.36927 * 120.00015 * 234.97502 * 18 16 15 21 21 H 1.07999 * 120.00215 * 327.77380 * 20 18 16 22 22 C 1.38811 * 120.00294 * 147.77674 * 20 18 16 23 23 N 1.31622 * 120.00191 * 155.21363 * 22 20 18 24 24 Si 1.86796 * 119.99744 * 335.21486 * 22 20 18 25 25 H 1.48499 * 109.47217 * 94.51696 * 24 22 20 26 26 H 1.48501 * 109.47290 * 214.51768 * 24 22 20 27 27 H 1.48505 * 109.47437 * 334.51697 * 24 22 20 28 28 C 1.47023 * 125.64627 * 176.51224 * 13 11 10 29 29 C 1.38597 * 119.99644 * 33.71522 * 6 5 3 30 30 H 1.09001 * 109.46757 * 60.00510 * 1 2 3 31 31 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47310 * 300.00377 * 1 2 3 33 33 H 1.09003 * 109.47498 * 239.99201 * 2 1 3 34 34 H 1.09001 * 109.46757 * 119.99490 * 2 1 3 35 35 H 0.97004 * 119.99745 * 4.96485 * 5 3 2 36 36 H 1.08005 * 119.88868 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.88805 * 179.97438 * 8 7 6 38 38 H 1.08006 * 120.00057 * 180.02562 * 9 8 7 39 39 H 1.08998 * 110.36130 * 274.74058 * 14 13 11 40 40 H 1.08993 * 110.36818 * 37.06897 * 14 13 11 41 41 H 1.08999 * 111.18824 * 279.18294 * 15 14 13 42 42 H 1.09004 * 110.93656 * 155.28743 * 15 14 13 43 43 H 1.09008 * 109.47292 * 87.21970 * 19 18 16 44 44 H 1.09002 * 109.47437 * 207.21670 * 19 18 16 45 45 H 1.08999 * 109.47700 * 327.22417 * 19 18 16 46 46 H 0.96996 * 119.99679 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.88547 * 300.44281 * 28 13 11 48 48 H 1.08998 * 109.88237 * 61.60739 * 28 13 11 49 49 H 1.07999 * 120.11301 * 359.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8248 2.9821 0.1054 7 6 4.9899 3.3600 -0.5514 8 6 5.4553 4.6576 -0.4514 9 6 4.7659 5.5869 0.3009 10 6 3.5948 5.2174 0.9643 11 6 2.8510 6.2125 1.7660 12 8 2.1543 5.8479 2.6929 13 7 2.9454 7.5237 1.4689 14 6 3.8102 8.1087 0.4281 15 6 3.1302 9.4540 0.0610 16 6 2.6156 9.9281 1.4458 17 1 3.4101 10.4239 2.0034 18 7 1.4576 10.8125 1.2934 19 6 0.2854 10.3611 0.5396 20 6 1.4710 12.0610 1.8555 21 1 2.0055 12.2322 2.7782 22 6 0.7975 13.1068 1.2394 23 7 0.3858 14.1346 1.9512 24 14 0.4754 13.0555 -0.5999 25 1 -0.8759 12.4930 -0.8503 26 1 0.5493 14.4313 -1.1540 27 1 1.4968 12.2015 -1.2577 28 6 2.2078 8.6081 2.1334 29 6 3.1255 3.9076 0.8638 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9873 0.9328 -0.0718 36 1 5.5335 2.6372 -1.1419 37 1 6.3615 4.9453 -0.9637 38 1 5.1326 6.6000 0.3762 39 1 4.8120 8.2822 0.8208 40 1 3.8510 7.4548 -0.4429 41 1 2.3028 9.3010 -0.6319 42 1 3.8549 10.1578 -0.3484 43 1 -0.3891 9.8220 1.2050 44 1 -0.2313 11.2242 0.1199 45 1 0.6042 9.7009 -0.2671 46 1 -0.0845 14.8655 1.5206 47 1 1.1351 8.4487 2.0232 48 1 2.4727 8.6434 3.1901 49 1 2.2195 3.6161 1.3743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971636148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:56 Heat of formation + Delta-G solvation = 6.843776 kcal Electronic energy + Delta-G solvation = -30156.918169 eV Core-core repulsion = 26085.679636 eV Total energy + Delta-G solvation = -4071.238533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.01746 -40.06067 -38.48844 -37.42485 -35.28824 -34.88887 -33.29207 -31.97375 -31.31875 -30.24236 -29.96987 -28.16905 -26.22032 -25.23723 -24.85893 -22.95034 -22.88851 -22.06351 -20.59774 -19.95018 -19.32592 -17.91604 -17.60689 -17.02201 -16.63660 -16.26905 -16.15719 -16.00973 -15.36229 -15.16956 -14.70376 -14.54623 -14.22736 -14.01031 -13.73074 -13.63221 -13.19445 -13.12616 -12.87904 -12.74756 -12.66126 -12.38100 -12.27598 -12.20011 -12.16933 -11.90412 -11.75921 -11.60153 -11.27903 -10.94048 -10.86155 -10.72235 -10.50925 -10.19017 -10.16913 -9.94147 -9.77026 -9.54821 -9.18173 -8.55370 -8.46470 -8.40332 -6.98633 -6.03016 -3.39739 0.68671 1.05752 2.19530 2.58735 2.85241 3.13143 3.29960 3.45293 3.49457 3.68528 4.18281 4.42321 4.49316 4.57314 4.60941 4.62764 4.74319 4.80673 4.91000 5.02455 5.08090 5.14425 5.20012 5.22207 5.34495 5.37612 5.41177 5.51715 5.59866 5.65964 5.72850 5.84944 5.86884 5.93331 6.01625 6.09923 6.11629 6.17640 6.22289 6.34006 6.41600 6.49736 6.63096 6.67810 6.72440 6.80217 6.94000 7.67937 7.72892 7.94989 8.28725 8.31395 8.90328 9.66235 10.03143 11.12324 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002392 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.278467 B =11700.540849 C =12368.301000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.141 4.141 3 C 0.506 3.494 4 O -0.511 6.511 5 N -0.677 5.677 6 C 0.135 3.865 7 C -0.127 4.127 8 C -0.107 4.107 9 C -0.116 4.116 10 C -0.102 4.102 11 C 0.568 3.432 12 O -0.538 6.538 13 N -0.606 5.606 14 C 0.091 3.909 15 C -0.159 4.159 16 C 0.173 3.827 17 H 0.090 0.910 18 N -0.596 5.596 19 C 0.105 3.895 20 C -0.273 4.273 21 H 0.084 0.916 22 C 0.033 3.967 23 N -0.896 5.896 24 Si 0.883 3.117 25 H -0.287 1.287 26 H -0.303 1.303 27 H -0.270 1.270 28 C 0.089 3.911 29 C -0.066 4.066 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.411 0.589 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.049 0.951 45 H 0.033 0.967 46 H 0.264 0.736 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -28.910 -8.119 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.294 3.706 4 O -0.384 6.384 5 N -0.323 5.323 6 C 0.041 3.959 7 C -0.147 4.147 8 C -0.126 4.126 9 C -0.135 4.135 10 C -0.106 4.106 11 C 0.357 3.643 12 O -0.416 6.416 13 N -0.339 5.339 14 C -0.031 4.031 15 C -0.199 4.199 16 C 0.064 3.936 17 H 0.108 0.892 18 N -0.318 5.318 19 C -0.040 4.040 20 C -0.401 4.401 21 H 0.101 0.899 22 C -0.167 4.167 23 N -0.537 5.537 24 Si 0.713 3.287 25 H -0.215 1.215 26 H -0.231 1.231 27 H -0.195 1.195 28 C -0.035 4.035 29 C -0.087 4.087 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.247 0.753 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.783 -28.352 -7.560 31.261 hybrid contribution 0.153 -0.323 -1.211 1.263 sum 10.936 -28.675 -8.771 31.918 Atomic orbital electron populations 1.21565 0.92535 1.01919 1.03803 1.21638 0.99122 0.92701 1.04600 1.21102 0.81535 0.92557 0.75434 1.90800 1.54889 1.46314 1.46399 1.43580 1.08015 1.06904 1.73781 1.17570 0.95478 0.85080 0.97755 1.21034 0.96789 0.97233 0.99691 1.20908 1.00042 0.92367 0.99279 1.21956 0.94473 1.00947 0.96093 1.19797 0.96708 0.94029 1.00064 1.17887 0.81572 0.80963 0.83895 1.90781 1.41188 1.79392 1.30220 1.48357 1.43455 1.05352 1.36722 1.22781 0.93899 0.95568 0.90900 1.23491 1.00821 0.94785 1.00842 1.21444 0.90495 0.88814 0.92896 0.89206 1.44025 1.11184 1.14058 1.62494 1.21386 0.89873 0.98126 0.94568 1.18809 1.33597 0.83597 1.04081 0.89886 1.25344 0.98327 0.95421 0.97656 1.69899 1.38074 1.10592 1.35094 0.86912 0.77806 0.75687 0.88251 1.21527 1.23133 1.19493 1.22732 0.97096 0.86648 0.97041 1.21169 1.00324 0.91365 0.95844 0.91781 0.91769 0.91647 0.88645 0.88465 0.75306 0.85416 0.84916 0.83783 0.90893 0.90296 0.90581 0.89899 0.96265 0.93264 0.94873 0.92624 0.90936 0.91496 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.59 16 2 C -0.14 -0.72 6.42 -27.89 -0.18 -0.90 16 3 C 0.51 4.75 7.57 -10.99 -0.08 4.67 16 4 O -0.51 -7.40 13.68 5.55 0.08 -7.33 16 5 N -0.68 -5.09 5.34 -9.90 -0.05 -5.15 16 6 C 0.13 1.40 6.27 -83.74 -0.52 0.88 16 7 C -0.13 -1.02 9.95 -39.31 -0.39 -1.41 16 8 C -0.11 -0.89 10.02 -39.67 -0.40 -1.29 16 9 C -0.12 -1.24 7.93 -39.16 -0.31 -1.55 16 10 C -0.10 -1.45 5.72 -104.99 -0.60 -2.05 16 11 C 0.57 9.94 7.65 -12.32 -0.09 9.85 16 12 O -0.54 -11.39 16.97 5.32 0.09 -11.30 16 13 N -0.61 -9.90 3.32 -171.49 -0.57 -10.47 16 14 C 0.09 1.18 5.02 -2.41 -0.01 1.17 16 15 C -0.16 -2.50 6.63 -24.46 -0.16 -2.66 16 16 C 0.17 3.28 3.44 -66.09 -0.23 3.05 16 17 H 0.09 1.68 7.95 -51.93 -0.41 1.27 16 18 N -0.60 -13.94 2.58 -171.39 -0.44 -14.38 16 19 C 0.10 2.34 8.44 59.85 0.50 2.84 16 20 C -0.27 -7.49 9.90 -15.06 -0.15 -7.64 16 21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.03 0.95 5.28 -17.43 -0.09 0.85 16 23 N -0.90 -27.15 13.97 55.49 0.78 -26.38 16 24 Si 0.88 22.05 25.01 -169.99 -4.25 17.80 16 25 H -0.29 -7.05 6.59 56.52 0.37 -6.68 16 26 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.09 1.64 6.51 -3.06 -0.02 1.62 16 29 C -0.07 -0.93 8.20 -38.98 -0.32 -1.25 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.41 1.38 8.82 -40.82 -0.36 1.02 16 36 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.34 4.47 -52.48 -0.23 1.10 16 39 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16 40 H 0.08 0.89 6.10 -51.93 -0.32 0.58 16 41 H 0.08 1.28 6.08 -51.93 -0.32 0.96 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.42 7.78 -51.92 -0.40 0.02 16 44 H 0.05 1.18 2.85 -51.93 -0.15 1.04 16 45 H 0.03 0.66 6.07 -51.93 -0.32 0.34 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.07 1.49 6.87 -51.93 -0.36 1.13 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.14 2.38 6.24 -52.49 -0.33 2.06 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -36.58 385.75 -8.24 -44.82 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.96 Total: 0.98 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.72 Total: 5.59 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.29 Total: -56.38 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.63 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.25 Total: 17.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.58 -8.24 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971636148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.663 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds