Wall clock time and date at job start Wed Apr 1 2020 04:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47199 * 2 1 4 4 O 1.21286 * 120.00190 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00220 * 179.97438 * 3 2 1 6 6 C 1.39950 * 120.00481 * 184.96281 * 5 3 2 7 7 C 1.38986 * 120.00259 * 213.73862 * 6 5 3 8 8 C 1.38214 * 120.22277 * 179.97438 * 7 6 5 9 9 C 1.38020 * 120.22321 * 359.97438 * 8 7 6 10 10 C 1.39574 * 119.99762 * 0.02562 * 9 8 7 11 11 C 1.47857 * 120.11152 * 180.27325 * 10 9 8 12 12 O 1.21551 * 120.00025 * 206.24358 * 11 10 9 13 13 N 1.34777 * 119.99750 * 26.24580 * 11 10 9 14 14 C 1.47423 * 125.64898 * 356.21106 * 13 11 10 15 15 C 1.55136 * 104.71952 * 155.81647 * 14 13 11 16 16 C 1.55155 * 101.48668 * 37.29584 * 15 14 13 17 17 H 1.08993 * 110.72374 * 82.69328 * 16 15 14 18 18 N 1.46506 * 110.71686 * 205.96769 * 16 15 14 19 19 C 1.46498 * 119.99857 * 54.97218 * 18 16 15 20 20 C 1.36927 * 120.00015 * 234.97502 * 18 16 15 21 21 H 1.07999 * 120.00215 * 327.77380 * 20 18 16 22 22 C 1.38811 * 120.00294 * 147.77674 * 20 18 16 23 23 N 1.31622 * 120.00191 * 155.21363 * 22 20 18 24 24 Si 1.86796 * 119.99744 * 335.21486 * 22 20 18 25 25 H 1.48499 * 109.47217 * 94.51696 * 24 22 20 26 26 H 1.48501 * 109.47290 * 214.51768 * 24 22 20 27 27 H 1.48505 * 109.47437 * 334.51697 * 24 22 20 28 28 C 1.47023 * 125.64627 * 176.51224 * 13 11 10 29 29 C 1.38597 * 119.99644 * 33.71522 * 6 5 3 30 30 H 1.09001 * 109.46757 * 60.00510 * 1 2 3 31 31 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47310 * 300.00377 * 1 2 3 33 33 H 1.09003 * 109.47498 * 239.99201 * 2 1 3 34 34 H 1.09001 * 109.46757 * 119.99490 * 2 1 3 35 35 H 0.97004 * 119.99745 * 4.96485 * 5 3 2 36 36 H 1.08005 * 119.88868 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.88805 * 179.97438 * 8 7 6 38 38 H 1.08006 * 120.00057 * 180.02562 * 9 8 7 39 39 H 1.08998 * 110.36130 * 274.74058 * 14 13 11 40 40 H 1.08993 * 110.36818 * 37.06897 * 14 13 11 41 41 H 1.08999 * 111.18824 * 279.18294 * 15 14 13 42 42 H 1.09004 * 110.93656 * 155.28743 * 15 14 13 43 43 H 1.09008 * 109.47292 * 87.21970 * 19 18 16 44 44 H 1.09002 * 109.47437 * 207.21670 * 19 18 16 45 45 H 1.08999 * 109.47700 * 327.22417 * 19 18 16 46 46 H 0.96996 * 119.99679 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.88547 * 300.44281 * 28 13 11 48 48 H 1.08998 * 109.88237 * 61.60739 * 28 13 11 49 49 H 1.07999 * 120.11301 * 359.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8248 2.9821 0.1054 7 6 4.9899 3.3600 -0.5514 8 6 5.4553 4.6576 -0.4514 9 6 4.7659 5.5869 0.3009 10 6 3.5948 5.2174 0.9643 11 6 2.8510 6.2125 1.7660 12 8 2.1543 5.8479 2.6929 13 7 2.9454 7.5237 1.4689 14 6 3.8102 8.1087 0.4281 15 6 3.1302 9.4540 0.0610 16 6 2.6156 9.9281 1.4458 17 1 3.4101 10.4239 2.0034 18 7 1.4576 10.8125 1.2934 19 6 0.2854 10.3611 0.5396 20 6 1.4710 12.0610 1.8555 21 1 2.0055 12.2322 2.7782 22 6 0.7975 13.1068 1.2394 23 7 0.3858 14.1346 1.9512 24 14 0.4754 13.0555 -0.5999 25 1 -0.8759 12.4930 -0.8503 26 1 0.5493 14.4313 -1.1540 27 1 1.4968 12.2015 -1.2577 28 6 2.2078 8.6081 2.1334 29 6 3.1255 3.9076 0.8638 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9873 0.9328 -0.0718 36 1 5.5335 2.6372 -1.1419 37 1 6.3615 4.9453 -0.9637 38 1 5.1326 6.6000 0.3762 39 1 4.8120 8.2822 0.8208 40 1 3.8510 7.4548 -0.4429 41 1 2.3028 9.3010 -0.6319 42 1 3.8549 10.1578 -0.3484 43 1 -0.3891 9.8220 1.2050 44 1 -0.2313 11.2242 0.1199 45 1 0.6042 9.7009 -0.2671 46 1 -0.0845 14.8655 1.5206 47 1 1.1351 8.4487 2.0232 48 1 2.4727 8.6434 3.1901 49 1 2.2195 3.6161 1.3743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971636148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:55 Heat of formation + Delta-G solvation = -19.807815 kcal Electronic energy + Delta-G solvation = -30158.073868 eV Core-core repulsion = 26085.679636 eV Total energy + Delta-G solvation = -4072.394233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.89458 -41.17536 -39.51365 -38.81396 -36.79170 -35.90156 -33.93634 -33.76780 -32.42052 -31.52467 -30.92916 -29.48614 -28.14153 -26.20420 -25.87764 -24.51487 -23.82991 -23.00751 -21.32342 -21.12110 -20.83169 -19.03292 -18.87940 -18.32371 -17.93690 -17.51703 -17.08771 -16.88604 -16.76250 -16.40555 -15.92401 -15.63772 -15.34943 -15.01890 -14.92282 -14.74715 -14.66260 -14.41848 -14.34119 -14.14683 -13.82857 -13.67549 -13.41111 -13.25278 -13.17644 -12.92930 -12.78164 -12.63474 -12.44688 -12.42648 -12.17710 -12.07434 -11.97654 -11.68209 -11.58136 -11.40763 -11.07851 -10.95116 -10.66735 -10.07084 -9.72088 -9.22117 -8.95639 -8.22309 -5.56534 -0.17566 0.25303 1.31527 1.41646 1.48382 1.53594 1.66758 1.84883 2.06402 2.41279 2.79461 2.97908 3.24153 3.37405 3.65899 3.67760 3.87330 3.93957 4.05828 4.15660 4.18016 4.19837 4.22837 4.25626 4.34392 4.43007 4.44835 4.49931 4.58825 4.64335 4.69907 4.76919 4.85150 4.90810 4.93245 4.94201 5.00784 5.12017 5.19437 5.21116 5.25960 5.29951 5.31082 5.37939 5.43041 5.85557 5.92433 6.12549 6.38471 6.40334 6.87110 6.97595 7.12606 7.56279 7.96687 8.96989 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002392 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.278467 B =11700.540849 C =12368.301000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.497 3.503 4 O -0.573 6.573 5 N -0.661 5.661 6 C 0.128 3.872 7 C -0.107 4.107 8 C -0.094 4.094 9 C -0.113 4.113 10 C -0.128 4.128 11 C 0.560 3.440 12 O -0.594 6.594 13 N -0.605 5.605 14 C 0.096 3.904 15 C -0.149 4.149 16 C 0.168 3.832 17 H 0.091 0.909 18 N -0.608 5.608 19 C 0.104 3.896 20 C -0.263 4.263 21 H 0.049 0.951 22 C -0.025 4.025 23 N -0.946 5.946 24 Si 0.949 3.051 25 H -0.282 1.282 26 H -0.309 1.309 27 H -0.248 1.248 28 C 0.097 3.903 29 C -0.096 4.096 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.434 0.566 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.162 0.838 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.013 0.987 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.264 0.736 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.922 -32.080 -12.033 37.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.287 3.713 4 O -0.451 6.451 5 N -0.308 5.308 6 C 0.034 3.966 7 C -0.127 4.127 8 C -0.112 4.112 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.351 3.649 12 O -0.477 6.477 13 N -0.337 5.337 14 C -0.025 4.025 15 C -0.189 4.189 16 C 0.060 3.940 17 H 0.109 0.891 18 N -0.330 5.330 19 C -0.040 4.040 20 C -0.393 4.393 21 H 0.067 0.933 22 C -0.221 4.221 23 N -0.590 5.590 24 Si 0.778 3.222 25 H -0.210 1.210 26 H -0.237 1.237 27 H -0.171 1.171 28 C -0.028 4.028 29 C -0.118 4.118 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.274 0.726 36 H 0.191 0.809 37 H 0.195 0.805 38 H 0.179 0.821 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.031 0.969 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.873 -31.597 -11.514 36.771 hybrid contribution -1.053 0.537 0.114 1.188 sum 13.820 -31.060 -11.400 35.856 Atomic orbital electron populations 1.21583 0.94146 1.02842 1.01539 1.21713 0.97619 0.90104 1.07523 1.21984 0.81645 0.93698 0.73947 1.90789 1.56528 1.48471 1.49285 1.43497 1.07997 1.06754 1.72587 1.17738 0.96011 0.85578 0.97304 1.21556 0.95013 0.98208 0.97886 1.21441 1.00560 0.91629 0.97590 1.22152 0.92968 1.02483 0.95549 1.19575 0.98544 0.93091 1.01959 1.18629 0.81064 0.81627 0.83539 1.90734 1.43806 1.80308 1.32811 1.48400 1.43505 1.04670 1.37107 1.23073 0.94334 0.94102 0.90993 1.23393 1.01172 0.96528 0.97783 1.21554 0.89095 0.87788 0.95521 0.89137 1.44059 1.13103 1.13222 1.62641 1.21406 0.89527 0.97857 0.95171 1.18707 1.32155 0.85350 1.03055 0.93291 1.25987 0.98901 0.95270 1.01970 1.70029 1.40155 1.11883 1.36892 0.85829 0.78383 0.75543 0.82452 1.21024 1.23738 1.17142 1.22416 0.95896 0.87712 0.96778 1.20985 1.00135 0.92740 0.97926 0.93668 0.89079 0.94426 0.84972 0.85807 0.72552 0.80917 0.80475 0.82105 0.87317 0.87611 0.91373 0.87754 0.96916 0.94619 0.91946 0.92733 0.93682 0.92833 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 71.98 0.66 -1.22 16 2 C -0.13 -1.07 6.42 29.85 0.19 -0.88 16 3 C 0.50 9.11 7.57 87.65 0.66 9.77 16 4 O -0.57 -17.81 13.68 -3.05 -0.04 -17.85 16 5 N -0.66 -8.46 5.34 -303.60 -1.62 -10.08 16 6 C 0.13 2.40 6.27 38.11 0.24 2.63 16 7 C -0.11 -1.15 9.95 22.44 0.22 -0.92 16 8 C -0.09 -1.00 10.02 22.21 0.22 -0.78 16 9 C -0.11 -1.99 7.93 22.54 0.18 -1.81 16 10 C -0.13 -3.60 5.72 -20.10 -0.11 -3.71 16 11 C 0.56 20.42 7.65 86.79 0.66 21.08 16 12 O -0.59 -27.43 16.97 -3.88 -0.07 -27.50 16 13 N -0.60 -19.69 3.32 -814.74 -2.71 -22.40 16 14 C 0.10 2.16 5.02 86.94 0.44 2.59 16 15 C -0.15 -4.23 6.63 32.07 0.21 -4.02 16 16 C 0.17 6.32 3.44 46.18 0.16 6.48 16 17 H 0.09 3.37 7.95 -2.39 -0.02 3.35 16 18 N -0.61 -28.64 2.58 -696.16 -1.80 -30.44 16 19 C 0.10 4.64 8.44 127.77 1.08 5.72 16 20 C -0.26 -14.87 9.90 84.03 0.83 -14.04 16 21 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 22 C -0.02 -1.44 5.28 84.86 0.45 -0.99 16 23 N -0.95 -59.31 13.97 21.65 0.30 -59.01 16 24 Si 0.95 45.78 25.01 68.60 1.72 47.49 16 25 H -0.28 -13.30 6.59 99.48 0.66 -12.64 16 26 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 27 H -0.25 -10.95 7.11 99.48 0.71 -10.25 16 28 C 0.10 3.72 6.51 86.73 0.56 4.29 16 29 C -0.10 -2.79 8.20 22.66 0.19 -2.61 16 30 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 33 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.43 1.17 8.82 -92.71 -0.82 0.35 16 36 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 37 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.16 2.18 4.47 -2.91 -0.01 2.16 16 39 H 0.11 1.76 7.31 -2.39 -0.02 1.74 16 40 H 0.11 1.91 6.10 -2.39 -0.01 1.89 16 41 H 0.07 2.07 6.08 -2.39 -0.01 2.06 16 42 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 43 H 0.01 0.57 7.78 -2.38 -0.02 0.55 16 44 H 0.04 1.69 2.85 -2.39 -0.01 1.68 16 45 H 0.06 2.39 6.07 -2.39 -0.01 2.38 16 46 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.04 1.96 6.87 -2.39 -0.02 1.94 16 48 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.10 3.75 6.24 -2.91 -0.02 3.73 16 Total: -1.00 -90.43 385.75 2.75 -87.68 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.12 Total: 10.53 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 6.85 Total: 21.58 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -5.82 Total: -121.93 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.11 Total: -45.35 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.72 Total: 47.49 kcal Total: -90.43 2.75 -87.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971636148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.868 kcal (2) G-P(sol) polarization free energy of solvation -90.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds