Wall clock time and date at job start Wed Apr 1 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 O 1.42900 * 109.46517 * 119.99469 * 2 1 3 5 5 C 1.35501 * 117.00038 * 90.00533 * 4 2 1 6 6 C 1.39164 * 119.52858 * 179.97438 * 5 4 2 7 7 C 1.37955 * 119.26445 * 180.02562 * 6 5 4 8 8 C 1.40282 * 118.35897 * 359.97438 * 7 6 5 9 9 C 1.47610 * 120.50019 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00300 * 359.97438 * 9 8 7 11 11 N 1.34786 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00087 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47017 * 180.02562 * 12 11 9 14 14 H 1.08996 * 115.51395 * 29.58698 * 13 12 11 15 15 C 1.52995 * 117.43949 * 244.23859 * 13 12 11 16 16 H 1.08997 * 119.54311 * 4.11966 * 15 13 12 17 17 C 1.57697 * 116.10826 * 161.64186 * 15 13 12 18 18 N 1.48142 * 104.67522 * 87.30678 * 17 15 13 19 19 C 1.36943 * 127.83487 * 139.77895 * 18 17 15 20 20 H 1.07998 * 119.99381 * 195.59283 * 19 18 17 21 21 C 1.38810 * 120.00202 * 15.58364 * 19 18 17 22 22 N 1.31621 * 119.99935 * 9.02846 * 21 19 18 23 23 Si 1.86798 * 119.99949 * 189.01453 * 21 19 18 24 24 H 1.48510 * 109.46860 * 94.46545 * 23 21 19 25 25 H 1.48496 * 109.47419 * 214.46229 * 23 21 19 26 26 H 1.48495 * 109.47344 * 334.46694 * 23 21 19 27 27 C 1.48138 * 104.32476 * 319.77471 * 18 17 15 28 28 C 1.53000 * 117.43907 * 175.00050 * 13 12 11 29 29 H 1.09000 * 119.54303 * 355.87747 * 28 13 12 30 30 C 1.39525 * 119.00195 * 0.02562 * 8 7 6 31 31 N 1.31663 * 120.62958 * 0.27250 * 30 8 7 32 32 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47482 * 300.00569 * 1 2 3 34 34 H 1.09008 * 109.46910 * 60.00690 * 1 2 3 35 35 H 1.08997 * 109.46982 * 239.99374 * 2 1 3 36 36 H 1.08999 * 109.46869 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.46912 * 299.99720 * 3 2 1 38 38 H 1.08996 * 109.47036 * 59.99653 * 3 2 1 39 39 H 1.07995 * 120.36712 * 0.04107 * 6 5 4 40 40 H 1.07993 * 120.82236 * 180.02562 * 7 6 5 41 41 H 0.96998 * 119.99462 * 0.02562 * 11 9 8 42 42 H 1.09003 * 109.47246 * 300.00094 * 12 11 9 43 43 H 1.09001 * 109.47447 * 60.00410 * 12 11 9 44 44 H 1.09003 * 110.91807 * 328.22592 * 17 15 13 45 45 H 1.09007 * 109.93396 * 205.89173 * 17 15 13 46 46 H 0.96998 * 119.99604 * 179.97438 * 22 21 19 47 47 H 1.09008 * 110.40853 * 280.79894 * 27 18 17 48 48 H 1.09006 * 110.40833 * 158.37247 * 27 18 17 49 49 H 1.07999 * 119.68547 * 179.97438 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2113 -2.0091 1.0656 6 6 2.6751 -2.7175 2.1700 7 6 2.8826 -4.0770 2.0607 8 6 2.6146 -4.6951 0.8302 9 6 2.8195 -6.1471 0.6609 10 8 3.2237 -6.8166 1.5917 11 7 2.5583 -6.7307 -0.5257 12 6 2.7611 -8.1718 -0.6935 13 6 2.3943 -8.5752 -2.1231 14 1 2.5416 -7.8055 -2.8807 15 6 1.2089 -9.5252 -2.3055 16 1 0.6254 -9.8295 -1.4365 17 6 0.5731 -9.5728 -3.7478 18 7 1.3663 -10.5916 -4.4742 19 6 0.9126 -11.5425 -5.3490 20 1 1.5448 -12.3766 -5.6153 21 6 -0.3598 -11.4344 -5.8931 22 7 -1.0617 -10.3357 -5.7123 23 14 -1.0758 -12.8480 -6.8823 24 1 -1.9014 -13.7053 -5.9942 25 1 -1.9228 -12.3079 -7.9759 26 1 0.0275 -13.6546 -7.4630 27 6 2.7614 -10.3482 -4.0396 28 6 2.6500 -10.0268 -2.5336 29 1 3.1401 -10.7046 -1.8347 30 6 2.1516 -3.9167 -0.2311 31 7 1.9731 -2.6205 -0.0845 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 2.8703 -2.2087 3.1024 40 1 3.2416 -4.6513 2.9018 41 1 2.2362 -6.1964 -1.2684 42 1 3.8063 -8.4161 -0.5043 43 1 2.1283 -8.7122 0.0105 44 1 0.6551 -8.6043 -4.2413 45 1 -0.4712 -9.8787 -3.6837 46 1 -1.9507 -10.2601 -6.0929 47 1 3.1852 -9.5009 -4.5788 48 1 3.3687 -11.2402 -4.1940 49 1 1.9423 -4.3811 -1.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978236752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:54 Heat of formation + Delta-G solvation = 19.836959 kcal Electronic energy + Delta-G solvation = -28789.585438 eV Core-core repulsion = 24718.910332 eV Total energy + Delta-G solvation = -4070.675106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.24024 -39.84410 -38.77162 -38.15873 -35.08996 -33.78555 -33.37791 -32.89742 -31.25353 -30.48860 -27.70629 -27.36229 -27.00585 -25.20365 -24.42676 -24.01861 -21.59991 -21.13646 -20.98216 -19.97539 -19.29696 -18.98549 -17.90103 -17.34802 -16.82675 -16.17270 -15.80438 -15.37285 -15.30297 -14.95582 -14.82711 -14.67171 -14.25750 -14.08300 -13.64680 -13.60911 -13.40776 -13.09781 -13.00536 -12.84597 -12.74496 -12.70707 -12.68876 -12.32468 -11.86765 -11.37394 -11.27827 -11.19536 -11.11358 -10.86163 -10.71160 -10.42226 -10.36061 -10.24778 -10.12964 -9.86428 -9.77645 -9.48273 -9.13607 -9.08393 -8.85192 -8.67086 -6.89603 -5.82680 -3.17036 0.38377 0.80565 2.54425 2.65153 2.98504 3.36498 3.42114 3.43970 3.51393 3.75127 4.14047 4.39363 4.41066 4.43610 4.49608 4.53820 4.62330 4.71916 4.83430 4.86947 5.13187 5.18140 5.26187 5.30411 5.31615 5.35407 5.37927 5.40678 5.48464 5.49520 5.66277 5.70060 5.76670 5.77815 5.88297 5.90128 5.92679 5.96596 6.10519 6.29336 6.52042 6.64457 6.69479 6.80605 6.88621 7.31053 7.33067 7.37519 7.50353 7.69341 8.05064 8.18422 9.08578 9.71092 10.48084 11.31544 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014329 B = 0.001849 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.571375 B =15143.476752 C =16655.473358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.345 3.655 6 C -0.200 4.200 7 C 0.018 3.982 8 C -0.226 4.226 9 C 0.567 3.433 10 O -0.541 6.541 11 N -0.718 5.718 12 C 0.155 3.845 13 C -0.155 4.155 14 H 0.103 0.897 15 C -0.169 4.169 16 H 0.106 0.894 17 C 0.186 3.814 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.154 3.846 28 C -0.165 4.165 29 H 0.103 0.897 30 C 0.182 3.818 31 N -0.542 5.542 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.088 0.912 46 H 0.254 0.746 47 H 0.025 0.975 48 H 0.050 0.950 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 21.303 14.324 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.205 6.205 5 C 0.167 3.833 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.232 4.232 9 C 0.353 3.647 10 O -0.420 6.420 11 N -0.369 5.369 12 C 0.032 3.968 13 C -0.174 4.174 14 H 0.121 0.879 15 C -0.189 4.189 16 H 0.124 0.876 17 C 0.060 3.940 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.028 3.972 28 C -0.185 4.185 29 H 0.121 0.879 30 C 0.024 3.976 31 N -0.266 5.266 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.069 0.931 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.608 21.413 14.300 26.584 hybrid contribution -0.387 -0.916 -0.351 1.055 sum 6.221 20.497 13.949 25.562 Atomic orbital electron populations 1.22227 0.94556 1.03123 1.02778 1.22446 0.94645 0.92868 0.87771 1.21916 1.02020 0.93727 1.03145 1.86278 1.79327 1.15801 1.39078 1.20073 0.88939 0.84762 0.89568 1.21054 1.07549 0.94034 0.99393 1.21525 0.89754 0.92888 0.96617 1.20816 1.10540 0.95087 0.96773 1.17860 0.77638 0.86422 0.82770 1.90782 1.46309 1.64745 1.40143 1.45934 1.67532 1.10204 1.13248 1.20909 1.01293 0.79155 0.95416 1.22550 1.04958 0.94391 0.95489 0.87886 1.25101 0.90572 1.01553 1.01705 0.87619 1.21659 0.97203 0.91519 0.83639 1.45153 1.00125 1.36946 1.49527 1.19019 0.99025 0.99788 1.17626 0.90530 1.24902 0.98267 0.97409 0.99757 1.69892 1.12107 1.25187 1.49035 0.86082 0.78953 0.81298 0.79312 1.21521 1.21669 1.20476 1.21163 0.88908 0.97850 0.89323 1.23790 1.01411 0.93982 0.99334 0.87914 1.22678 0.89533 0.87557 0.97866 1.67282 1.22588 1.12285 1.24406 0.91833 0.91954 0.90832 0.88916 0.91775 0.90279 0.91597 0.83403 0.82796 0.76357 0.91085 0.91175 0.95609 0.89389 0.93559 0.95754 0.93104 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.53 37.16 0.35 -0.82 16 2 C 0.08 0.59 3.11 -26.73 -0.08 0.51 16 3 C -0.15 -0.82 9.56 37.16 0.36 -0.46 16 4 O -0.30 -2.76 9.75 -18.20 -0.18 -2.94 16 5 C 0.35 3.39 7.46 -16.96 -0.13 3.26 16 6 C -0.20 -1.71 10.02 -39.34 -0.39 -2.11 16 7 C 0.02 0.17 9.70 -38.92 -0.38 -0.21 16 8 C -0.23 -2.34 5.89 -104.83 -0.62 -2.95 16 9 C 0.57 7.05 7.77 -12.43 -0.10 6.96 16 10 O -0.54 -8.53 16.41 5.30 0.09 -8.44 16 11 N -0.72 -8.09 5.51 -61.32 -0.34 -8.43 16 12 C 0.16 2.00 5.95 -4.04 -0.02 1.97 16 13 C -0.15 -2.26 5.34 -90.62 -0.48 -2.74 16 14 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 15 C -0.17 -3.06 7.03 -87.38 -0.61 -3.68 16 16 H 0.11 1.83 8.12 -51.93 -0.42 1.41 16 17 C 0.19 4.32 5.76 -0.57 0.00 4.32 16 18 N -0.59 -14.95 3.38 -166.73 -0.56 -15.51 16 19 C -0.23 -6.24 10.35 -15.06 -0.16 -6.39 16 20 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 21 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 22 N -0.92 -26.43 10.86 55.49 0.60 -25.83 16 23 Si 0.91 21.74 29.56 -169.99 -5.03 16.72 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 3.14 7.04 -2.41 -0.02 3.12 16 28 C -0.16 -2.82 6.77 -89.22 -0.60 -3.42 16 29 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 30 C 0.18 1.69 10.71 -17.14 -0.18 1.51 16 31 N -0.54 -5.47 8.61 -12.96 -0.11 -5.58 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 35 H 0.09 0.77 6.97 -51.93 -0.36 0.40 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.15 1.31 7.73 -52.49 -0.41 0.90 16 41 H 0.40 3.63 6.46 -40.82 -0.26 3.36 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.97 7.94 -51.93 -0.41 0.55 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.31 6.51 -51.93 -0.34 1.98 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.16 1.15 6.41 -52.49 -0.34 0.81 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -32.47 404.74 -10.17 -42.64 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.58 Total: 2.66 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.17 Total: -1.40 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.41 Total: -55.34 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.47 -10.17 -42.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978236752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.479 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds