Wall clock time and date at job start Wed Apr 1 2020 04:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47285 * 2 1 4 4 O 1.42895 * 109.47082 * 120.00145 * 2 1 3 5 5 C 1.35660 * 117.00712 * 84.89835 * 4 2 1 6 6 C 1.38951 * 120.57308 * 354.12060 * 5 4 2 7 7 N 1.31627 * 120.79301 * 179.97438 * 6 5 4 8 8 C 1.31911 * 122.14473 * 359.72921 * 7 6 5 9 9 C 1.37967 * 121.07382 * 0.54468 * 8 7 6 10 10 C 1.39948 * 119.06774 * 359.46844 * 9 8 7 11 11 C 1.47843 * 120.96027 * 180.27730 * 10 9 8 12 12 O 1.21553 * 120.00033 * 180.02562 * 11 10 9 13 13 N 1.34781 * 120.00033 * 359.97438 * 11 10 9 14 14 C 1.46491 * 119.99947 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47187 * 180.02562 * 14 13 11 16 16 H 1.08996 * 115.51438 * 29.58382 * 15 14 13 17 17 C 1.52998 * 117.44315 * 244.23830 * 15 14 13 18 18 H 1.08996 * 119.54310 * 4.11813 * 17 15 14 19 19 C 1.57702 * 116.11023 * 161.63774 * 17 15 14 20 20 N 1.48138 * 104.67348 * 87.30860 * 19 17 15 21 21 C 1.36944 * 127.83646 * 139.77085 * 20 19 17 22 22 H 1.07994 * 119.99924 * 344.20699 * 21 20 19 23 23 C 1.38815 * 119.99918 * 164.20280 * 21 20 19 24 24 N 1.31622 * 120.00010 * 349.82512 * 23 21 20 25 25 Si 1.86799 * 120.00017 * 169.82422 * 23 21 20 26 26 H 1.48502 * 109.47042 * 90.00016 * 25 23 21 27 27 H 1.48501 * 109.47130 * 209.99980 * 25 23 21 28 28 H 1.48496 * 109.47054 * 330.00249 * 25 23 21 29 29 C 1.48150 * 104.32783 * 319.77490 * 20 19 17 30 30 C 1.53007 * 117.44565 * 174.99775 * 15 14 13 31 31 H 1.09002 * 119.53792 * 355.88217 * 30 15 14 32 32 H 1.09004 * 109.47076 * 60.00433 * 1 2 3 33 33 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47419 * 299.99959 * 1 2 3 35 35 H 1.09003 * 109.47301 * 239.99695 * 2 1 3 36 36 H 1.08992 * 109.47421 * 179.97438 * 3 2 1 37 37 H 1.09005 * 109.46447 * 300.00270 * 3 2 1 38 38 H 1.08996 * 109.46858 * 59.99698 * 3 2 1 39 39 H 1.08003 * 119.60647 * 359.96164 * 6 5 4 40 40 H 1.08005 * 119.46320 * 180.28717 * 8 7 6 41 41 H 1.08001 * 120.46341 * 179.75183 * 9 8 7 42 42 H 0.97002 * 119.99736 * 0.02562 * 13 11 10 43 43 H 1.09006 * 109.47558 * 299.99933 * 14 13 11 44 44 H 1.09005 * 109.47611 * 59.99943 * 14 13 11 45 45 H 1.08994 * 110.91902 * 328.23067 * 19 17 15 46 46 H 1.09005 * 109.93333 * 205.89108 * 19 17 15 47 47 H 0.96998 * 119.99906 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.40564 * 280.80601 * 29 20 19 49 49 H 1.09003 * 110.40677 * 158.36820 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1103 -2.0245 1.0988 6 6 1.6507 -2.7135 -0.0169 7 7 1.7499 -4.0242 -0.0876 8 6 2.2877 -4.7406 0.8806 9 6 2.7656 -4.1420 2.0282 10 6 2.6843 -2.7505 2.1537 11 6 3.1890 -2.0652 3.3625 12 8 3.1092 -0.8557 3.4534 13 7 3.7367 -2.7815 4.3642 14 6 4.2363 -2.1025 5.5623 15 6 4.8036 -3.1374 6.5359 16 1 5.2173 -4.0357 6.0778 17 6 4.1010 -3.2949 7.8859 18 1 3.1928 -2.7274 8.0885 19 6 4.3973 -4.6301 8.6709 20 7 5.6177 -4.3394 9.4586 21 6 5.8964 -4.7158 10.7455 22 1 5.1032 -5.0652 11.3897 23 6 7.1985 -4.6482 11.2219 24 7 8.1923 -4.4172 10.3905 25 14 7.5402 -4.8849 13.0431 26 1 7.7778 -6.3245 13.3191 27 1 8.7424 -4.1022 13.4270 28 1 6.3719 -4.4161 13.8309 29 6 6.4684 -3.5491 8.5385 30 6 5.4835 -2.6149 7.8032 31 1 5.6051 -1.5409 7.9440 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 1.2065 -2.1672 -0.8359 40 1 2.3513 -5.8136 0.7751 41 1 3.2005 -4.7385 2.8165 42 1 3.8001 -3.7468 4.2918 43 1 5.0210 -1.4001 5.2813 44 1 3.4195 -1.5622 6.0410 45 1 4.5774 -5.4550 7.9816 46 1 3.5640 -4.8644 9.3335 47 1 9.1022 -4.3703 10.7233 48 1 6.9719 -4.2053 7.8285 49 1 7.1972 -2.9659 9.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978543875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:13 Heat of formation + Delta-G solvation = 24.949767 kcal Electronic energy + Delta-G solvation = -29325.789601 eV Core-core repulsion = 25255.336203 eV Total energy + Delta-G solvation = -4070.453398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.34744 -39.54406 -38.80770 -38.50190 -35.02571 -33.90762 -33.49269 -32.50606 -30.79357 -30.58653 -27.76387 -27.55010 -26.99478 -25.38988 -24.63633 -23.70787 -21.77590 -21.16662 -20.90263 -20.05197 -19.30121 -18.79778 -17.76457 -17.28260 -16.81320 -16.11379 -15.79974 -15.69528 -15.28489 -15.00516 -14.74398 -14.60136 -14.27963 -14.19371 -13.86956 -13.52623 -13.46713 -13.12894 -13.01204 -12.80969 -12.77372 -12.66129 -12.52625 -12.20651 -11.88794 -11.50299 -11.30360 -11.26442 -11.10979 -10.83240 -10.65172 -10.44106 -10.29057 -10.14467 -10.12882 -9.77402 -9.72965 -9.44008 -9.16428 -8.99716 -8.80426 -8.64638 -6.88888 -5.82421 -3.16176 0.36137 0.72785 2.64559 2.74553 2.93815 3.36596 3.42482 3.44586 3.49602 3.97662 4.11444 4.18173 4.28161 4.34782 4.40455 4.44999 4.50576 4.58876 4.79329 4.87103 5.01971 5.10338 5.23293 5.27240 5.29979 5.33778 5.36238 5.38896 5.43608 5.46880 5.49851 5.68721 5.75872 5.76347 5.78794 5.89271 5.94190 6.04204 6.21353 6.31433 6.52501 6.63947 6.67505 6.87642 6.88572 7.32998 7.39209 7.47374 7.50491 7.69614 8.10049 8.18388 9.08661 9.71774 10.48806 11.32187 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.001826 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.777598 B =15328.733367 C =16038.353315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.268 6.268 5 C 0.137 3.863 6 C 0.009 3.991 7 N -0.433 5.433 8 C 0.051 3.949 9 C -0.098 4.098 10 C -0.128 4.128 11 C 0.557 3.443 12 O -0.514 6.514 13 N -0.718 5.718 14 C 0.156 3.844 15 C -0.154 4.154 16 H 0.103 0.897 17 C -0.172 4.172 18 H 0.107 0.893 19 C 0.156 3.844 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.184 3.816 30 C -0.162 4.162 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.148 0.852 42 H 0.400 0.600 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.048 0.952 47 H 0.254 0.746 48 H 0.024 0.976 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 5.477 -24.219 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.178 6.178 5 C 0.086 3.914 6 C -0.150 4.150 7 N -0.143 5.143 8 C -0.105 4.105 9 C -0.118 4.118 10 C -0.140 4.140 11 C 0.342 3.658 12 O -0.390 6.390 13 N -0.371 5.371 14 C 0.033 3.967 15 C -0.173 4.173 16 H 0.121 0.879 17 C -0.191 4.191 18 H 0.125 0.875 19 C 0.029 3.971 20 N -0.317 5.317 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.742 3.258 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.206 1.206 29 C 0.059 3.941 30 C -0.182 4.182 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.182 0.818 40 H 0.182 0.818 41 H 0.165 0.835 42 H 0.235 0.765 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.042 0.958 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.951 6.080 -24.462 28.809 hybrid contribution 0.476 -0.249 1.403 1.503 sum -13.475 5.831 -23.058 27.336 Atomic orbital electron populations 1.22416 0.94659 1.03152 1.03690 1.22631 0.94669 0.94441 0.87050 1.21825 1.02403 0.92937 1.03229 1.86433 1.79041 1.14424 1.37931 1.20121 0.92765 0.84684 0.93781 1.23043 1.03374 0.91021 0.97600 1.67371 1.11015 1.06810 1.29089 1.22599 0.97642 1.00697 0.89571 1.22319 0.97289 0.92848 0.99394 1.19902 1.04800 0.93466 0.95788 1.17857 0.78518 0.87001 0.82398 1.90835 1.55290 1.13152 1.79707 1.45915 1.61901 1.10902 1.18396 1.20901 0.98360 0.94014 0.83396 1.22548 1.04811 1.00346 0.89604 0.87909 1.24724 0.96234 1.01308 0.96883 0.87494 1.21714 0.90939 0.91504 0.92929 1.45148 1.15423 1.60063 1.11102 1.18977 0.92569 1.38506 0.85540 0.90607 1.24901 0.95296 1.01780 0.98307 1.69906 0.98680 1.54709 1.32781 0.86126 0.77542 0.77642 0.84467 1.21446 1.21529 1.20556 1.21061 0.91262 0.91135 0.90676 1.24180 0.97078 0.99904 0.97057 0.87994 0.90606 0.91917 0.90980 0.90813 0.91438 0.90392 0.91051 0.81811 0.81769 0.83481 0.76492 0.90982 0.91286 0.95571 0.93325 0.93541 0.95798 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.17 37.16 0.34 -0.76 16 2 C 0.07 0.51 2.85 -26.73 -0.08 0.43 16 3 C -0.15 -0.97 9.56 37.16 0.36 -0.62 16 4 O -0.27 -3.10 8.03 -39.87 -0.32 -3.42 16 5 C 0.14 1.51 6.63 -38.53 -0.26 1.26 16 6 C 0.01 0.09 9.43 -17.38 -0.16 -0.08 16 7 N -0.43 -4.22 10.32 -13.17 -0.14 -4.36 16 8 C 0.05 0.41 11.16 -17.62 -0.20 0.22 16 9 C -0.10 -0.81 9.61 -39.04 -0.38 -1.19 16 10 C -0.13 -1.44 5.92 -104.54 -0.62 -2.06 16 11 C 0.56 7.50 7.79 -12.33 -0.10 7.40 16 12 O -0.51 -8.75 15.31 -15.87 -0.24 -9.00 16 13 N -0.72 -8.41 5.51 -61.25 -0.34 -8.75 16 14 C 0.16 2.10 5.95 -4.05 -0.02 2.07 16 15 C -0.15 -2.29 5.34 -90.62 -0.48 -2.77 16 16 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 17 C -0.17 -2.94 7.03 -87.38 -0.61 -3.55 16 18 H 0.11 1.70 8.12 -51.93 -0.42 1.28 16 19 C 0.16 3.17 7.10 -0.57 0.00 3.17 16 20 N -0.59 -15.02 3.38 -166.73 -0.56 -15.59 16 21 C -0.23 -6.30 10.35 -15.05 -0.16 -6.45 16 22 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 23 C -0.01 -0.16 5.39 -17.43 -0.09 -0.25 16 24 N -0.91 -26.58 10.93 55.49 0.61 -25.97 16 25 Si 0.91 21.79 29.57 -169.99 -5.03 16.76 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.18 4.35 5.69 -2.41 -0.01 4.33 16 30 C -0.16 -2.99 6.77 -89.22 -0.60 -3.60 16 31 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.39 6.89 -51.93 -0.36 0.03 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.43 6.36 -51.93 -0.33 0.10 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.16 1.11 5.44 -52.48 -0.29 0.83 16 40 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.15 0.81 6.53 -52.49 -0.34 0.47 16 42 H 0.40 3.64 6.54 -40.82 -0.27 3.37 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.98 7.94 -51.93 -0.41 0.56 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 2.34 6.57 -51.93 -0.34 1.99 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -34.02 398.17 -10.47 -44.49 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.37 Total: 2.28 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.08 Total: -2.44 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.43 Total: -54.67 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.56 Total: -12.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.02 -10.47 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978543875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.440 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds